RNA–Protein interactions for RNA: ENST00000302516.9

SF3B3-201, Transcript of splicing factor 3b subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B3, Length 9,720 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-201ENST00000302516 ESF1Q9H501 851 aaKnown RBP10.04□□□□□ -0.8
SF3B3-201ENST00000302516 EIF4G2P78344 907 aaKnown RBP eCLIP10.04□□□□□ -0.8
SF3B3-201ENST00000302516 CDK11BP21127 795 aaKnown RBP10.04□□□□□ -0.8
SF3B3-201ENST00000302516 P3H3Q8IVL6 736 aa10.04□□□□□ -0.8
SF3B3-201ENST00000302516 MIER1Q8N108 512 aa10.02□□□□□ -0.81
SF3B3-201ENST00000302516 CDCA8Q53HL2 280 aa10□□□□□ -0.81
SF3B3-201ENST00000302516 STAG3Q9UJ98 1225 aa10□□□□□ -0.81
SF3B3-201ENST00000302516 CHMP4BQ9H444 224 aaKnown RBP9.99□□□□□ -0.81
SF3B3-201ENST00000302516 MYO15BQ96JP2 1530 aa9.97□□□□□ -0.81
SF3B3-201ENST00000302516 GOLGA6L6A8MZA4 724 aa9.97□□□□□ -0.81
SF3B3-201ENST00000302516 ZRSR1Q15695 479 aaKnown RBP9.97□□□□□ -0.81
SF3B3-201ENST00000302516 NOP58Q9Y2X3 529 aaKnown RBP9.96□□□□□ -0.81
SF3B3-201ENST00000302516 PTMAP06454 111 aaKnown RBP9.96□□□□□ -0.82
SF3B3-201ENST00000302516 TNIKQ9UKE5 1360 aa9.96□□□□□ -0.82
SF3B3-201ENST00000302516 PPP4R2Q9NY27 417 aa9.96□□□□□ -0.82
SF3B3-201ENST00000302516 TSPY4P0CV99 314 aa9.96□□□□□ -0.82
SF3B3-201ENST00000302516 TSPY10P0CW01 314 aa9.96□□□□□ -0.82
SF3B3-201ENST00000302516 ARXQ96QS3 562 aa9.95□□□□□ -0.82
SF3B3-201ENST00000302516 CFAP53Q96M91 514 aa9.95□□□□□ -0.82
SF3B3-201ENST00000302516 ARID3CA6NKF2 412 aa9.94□□□□□ -0.82
SF3B3-201ENST00000302516 MS4A1P11836 297 aa9.94□□□□□ -0.82
SF3B3-201ENST00000302516 BAZ1AQ9NRL2 1556 aaPredicted RBP9.94□□□□□ -0.82
SF3B3-201ENST00000302516 FHAD1B1AJZ9 1412 aa9.93□□□□□ -0.82
SF3B3-201ENST00000302516 KIF27Q86VH2 1401 aa9.93□□□□□ -0.82
SF3B3-201ENST00000302516 L1TD1Q5T7N2 865 aaKnown RBP9.93□□□□□ -0.82
SF3B3-201ENST00000302516 PTMSP20962 102 aa9.93□□□□□ -0.82
SF3B3-201ENST00000302516 CFAP44Q96MT7 982 aa9.92□□□□□ -0.82
SF3B3-201ENST00000302516 FTSJ3Q8IY81 847 aaKnown RBP9.92□□□□□ -0.82
SF3B3-201ENST00000302516 NRDCO43847 1150 aa9.91□□□□□ -0.82
SF3B3-201ENST00000302516 WRNQ14191 1432 aaPredicted RBP eCLIP9.91□□□□□ -0.82
SF3B3-201ENST00000302516 BAZ1BQ9UIG0 1483 aaKnown RBP9.91□□□□□ -0.82
SF3B3-201ENST00000302516 CHGAP10645 457 aaKnown RBP9.91□□□□□ -0.82
SF3B3-201ENST00000302516 CHAF1AQ13111 956 aaPredicted RBP9.91□□□□□ -0.82
SF3B3-201ENST00000302516 SALL2Q9Y467 1007 aaPredicted RBP9.9□□□□□ -0.82
SF3B3-201ENST00000302516 DNTTIP2Q5QJE6 756 aaKnown RBP9.9□□□□□ -0.82
SF3B3-201ENST00000302516 NAP1L5Q96NT1 182 aaPredicted RBP9.9□□□□□ -0.82
SF3B3-201ENST00000302516 KNSTRNQ9Y448 316 aa9.9□□□□□ -0.82
SF3B3-201ENST00000302516 NPM1P06748 294 aaKnown RBP eCLIP9.89□□□□□ -0.83
SF3B3-201ENST00000302516 IRX6P78412 446 aaPredicted RBP9.88□□□□□ -0.83
SF3B3-201ENST00000302516 CHIC2Q9UKJ5 165 aa9.88□□□□□ -0.83
SF3B3-201ENST00000302516 TIMELESSQ9UNS1 1208 aa9.88□□□□□ -0.83
SF3B3-201ENST00000302516 ARID4BQ4LE39 1312 aaPredicted RBP9.87□□□□□ -0.83
SF3B3-201ENST00000302516 PNNQ9H307 717 aaKnown RBP9.86□□□□□ -0.83
SF3B3-201ENST00000302516 CCER2I3L3R5 266 aa9.86□□□□□ -0.83
SF3B3-201ENST00000302516 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.86□□□□□ -0.835e-8■■□□□ 13.7
SF3B3-201ENST00000302516 KDM2AQ9Y2K7 1162 aa9.85□□□□□ -0.83
SF3B3-201ENST00000302516 SUPT16HQ9Y5B9 1047 aaKnown RBP9.85□□□□□ -0.83
SF3B3-201ENST00000302516 HSCBQ8IWL3 235 aa9.84□□□□□ -0.83
SF3B3-201ENST00000302516 ARHGAP35Q9NRY4 1499 aa9.83□□□□□ -0.84
SF3B3-201ENST00000302516 CCNB3Q8WWL7 1395 aa9.83□□□□□ -0.84
SF3B3-201ENST00000302516 MSNP26038 577 aaKnown RBP9.83□□□□□ -0.84
SF3B3-201ENST00000302516 HSP90AB1P08238 724 aaKnown RBP9.83□□□□□ -0.84
SF3B3-201ENST00000302516 MAPK8IP3Q9UPT6 1336 aa9.82□□□□□ -0.84
SF3B3-201ENST00000302516 NUDCQ9Y266 331 aa9.81□□□□□ -0.84
SF3B3-201ENST00000302516 RRP7BPQ9NSQ0 103 aa9.8□□□□□ -0.84
SF3B3-201ENST00000302516 MCCP23508 829 aa9.79□□□□□ -0.84
SF3B3-201ENST00000302516 CARD11Q9BXL7 1154 aa9.79□□□□□ -0.84
SF3B3-201ENST00000302516 LAS1LQ9Y4W2 734 aaKnown RBP9.79□□□□□ -0.84
SF3B3-201ENST00000302516 VPS8Q8N3P4 1428 aa9.78□□□□□ -0.84
SF3B3-201ENST00000302516 SETD5Q9C0A6 1442 aa9.78□□□□□ -0.84
SF3B3-201ENST00000302516 HAP1P54257 671 aaPredicted RBP9.77□□□□□ -0.85
SF3B3-201ENST00000302516 CHMP7Q8WUX9 453 aaPredicted RBP9.77□□□□□ -0.85
SF3B3-201ENST00000302516 KANK1Q14678 1352 aa9.77□□□□□ -0.85
SF3B3-201ENST00000302516 PPP1R15AO75807 674 aaPredicted RBP9.77□□□□□ -0.85
SF3B3-201ENST00000302516 PLEKHD1A6NEE1 506 aa9.76□□□□□ -0.85
SF3B3-201ENST00000302516 DEKP35659 375 aaKnown RBP9.76□□□□□ -0.85
SF3B3-201ENST00000302516 GBP4Q96PP9 640 aa9.76□□□□□ -0.85
SF3B3-201ENST00000302516 KTN1Q86UP2 1357 aaKnown RBP9.75□□□□□ -0.85
SF3B3-201ENST00000302516 SMARCA2P51531 1590 aa9.75□□□□□ -0.85
SF3B3-201ENST00000302516 SYAP1Q96A49 352 aaPredicted RBP9.75□□□□□ -0.85
SF3B3-201ENST00000302516 CFDP1Q9UEE9 299 aaPredicted RBP9.74□□□□□ -0.85
SF3B3-201ENST00000302516 EIF3AQ14152 1382 aaKnown RBP9.74□□□□□ -0.85
SF3B3-201ENST00000302516 GOLGA6L4A6NEF3 574 aa9.74□□□□□ -0.85
SF3B3-201ENST00000302516 RGS3P49796 1198 aa9.73□□□□□ -0.85
SF3B3-201ENST00000302516 HIRIP3Q9BW71 556 aaPredicted RBP9.73□□□□□ -0.85
SF3B3-201ENST00000302516 PHLDB1Q86UU1 1377 aa9.73□□□□□ -0.85
SF3B3-201ENST00000302516 TMF1P82094 1093 aa9.73□□□□□ -0.85
SF3B3-201ENST00000302516 TCERG1O14776 1098 aaKnown RBP9.72□□□□□ -0.85
SF3B3-201ENST00000302516 KIAA2012Q0VF49 1180 aa9.72□□□□□ -0.85
SF3B3-201ENST00000302516 ROCK2O75116 1388 aaKnown RBP9.71□□□□□ -0.85
SF3B3-201ENST00000302516 EIF4G1Q04637 1599 aaKnown RBP9.71□□□□□ -0.86
SF3B3-201ENST00000302516 USP35Q9P2H5 1018 aa9.71□□□□□ -0.86
SF3B3-201ENST00000302516 FGD1P98174 961 aa9.7□□□□□ -0.86
SF3B3-201ENST00000302516 CALD1Q05682 793 aaKnown RBP9.7□□□□□ -0.86
SF3B3-201ENST00000302516 RBM19Q9Y4C8 960 aaKnown RBP9.7□□□□□ -0.86
SF3B3-201ENST00000302516 HTATSF1O43719 755 aaKnown RBP9.7□□□□□ -0.86
SF3B3-201ENST00000302516 RALBP1Q15311 655 aa9.7□□□□□ -0.86
SF3B3-201ENST00000302516 FMN1Q68DA7 1419 aa9.69□□□□□ -0.86
SF3B3-201ENST00000302516 IPO8O15397 1037 aaKnown RBP9.69□□□□□ -0.86
SF3B3-201ENST00000302516 KCNJ4P48050 445 aa9.69□□□□□ -0.86
SF3B3-201ENST00000302516 TOP2AP11388 1531 aaKnown RBP9.69□□□□□ -0.86
SF3B3-201ENST00000302516 OS9Q13438 667 aaPredicted RBP9.68□□□□□ -0.86
SF3B3-201ENST00000302516 PHF14O94880 888 aa9.68□□□□□ -0.86
SF3B3-201ENST00000302516 DRC7Q8IY82 874 aa9.68□□□□□ -0.86
SF3B3-201ENST00000302516 FRAT1Q92837 279 aaPredicted RBP9.68□□□□□ -0.86
SF3B3-201ENST00000302516 RTN4Q9NQC3 1192 aaKnown RBP9.68□□□□□ -0.86
SF3B3-201ENST00000302516 B4GALNT3Q6L9W6 998 aa9.67□□□□□ -0.86
SF3B3-201ENST00000302516 CSPP1Q1MSJ5 1256 aa9.67□□□□□ -0.86
SF3B3-201ENST00000302516 PLCB2Q00722 1185 aa9.67□□□□□ -0.86
SF3B3-201ENST00000302516 CHMP4AQ9BY43 222 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms