RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 CASC1Q6TDU7 716 aa6.28□□□□□ -1.4
CSMD3-201ENST00000297405 MYH16Q9H6N6 1097 aa6.28□□□□□ -1.4
CSMD3-201ENST00000297405 HTATSF1O43719 755 aaKnown RBP6.27□□□□□ -1.41
CSMD3-201ENST00000297405 KIAA2012Q0VF49 1180 aa6.27□□□□□ -1.41
CSMD3-201ENST00000297405 FKBP8Q14318 412 aa6.27□□□□□ -1.41
CSMD3-201ENST00000297405 BAZ2BQ9UIF8 2168 aaKnown RBP6.27□□□□□ -1.41
CSMD3-201ENST00000297405 NOM1Q5C9Z4 860 aaKnown RBP6.27□□□□□ -1.41
CSMD3-201ENST00000297405 SYAP1Q96A49 352 aaPredicted RBP6.26□□□□□ -1.41
CSMD3-201ENST00000297405 MYO18AQ92614 2054 aaKnown RBP6.25□□□□□ -1.41
CSMD3-201ENST00000297405 PHF14O94880 888 aa6.24□□□□□ -1.41
CSMD3-201ENST00000297405 GPS2Q13227 327 aa6.24□□□□□ -1.41
CSMD3-201ENST00000297405 MS4A1P11836 297 aa6.23□□□□□ -1.41
CSMD3-201ENST00000297405 NPM2Q86SE8 214 aaKnown RBP6.23□□□□□ -1.41
CSMD3-201ENST00000297405 BCANQ96GW7 911 aa6.23□□□□□ -1.41
CSMD3-201ENST00000297405 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.22□□□□□ -1.41
CSMD3-201ENST00000297405 SCAF1Q9H7N4 1312 aaKnown RBP6.22□□□□□ -1.41
CSMD3-201ENST00000297405 TONSLQ96HA7 1378 aa6.22□□□□□ -1.41
CSMD3-201ENST00000297405 APPP05067 770 aa6.22□□□□□ -1.41
CSMD3-201ENST00000297405 CCDC66A2RUB6 948 aa6.21□□□□□ -1.42
CSMD3-201ENST00000297405 CHIC1Q5VXU3 224 aa6.21□□□□□ -1.42
CSMD3-201ENST00000297405 GBP4Q96PP9 640 aa6.21□□□□□ -1.42
CSMD3-201ENST00000297405 CCDC34Q96HJ3 373 aa6.2□□□□□ -1.42
CSMD3-201ENST00000297405 ANKRD12Q6UB98 2062 aa6.2□□□□□ -1.42
CSMD3-201ENST00000297405 CWC15Q9P013 229 aaKnown RBP6.2□□□□□ -1.42
CSMD3-201ENST00000297405 HNRNPUQ00839 825 aaKnown RBP eCLIP6.2□□□□□ -1.42
CSMD3-201ENST00000297405 TEX35Q5T0J7 233 aa6.2□□□□□ -1.42
CSMD3-201ENST00000297405 HAP1P54257 671 aaPredicted RBP6.2□□□□□ -1.42
CSMD3-201ENST00000297405 TSPYL1Q9H0U9 437 aa6.2□□□□□ -1.42
CSMD3-201ENST00000297405 CSPP1Q1MSJ5 1256 aa6.19□□□□□ -1.42
CSMD3-201ENST00000297405 HNRNPUL2Q1KMD3 747 aaKnown RBP6.19□□□□□ -1.42
CSMD3-201ENST00000297405 DEKP35659 375 aaKnown RBP6.19□□□□□ -1.42
CSMD3-201ENST00000297405 PPP4R2Q9NY27 417 aa6.18□□□□□ -1.42
CSMD3-201ENST00000297405 PPARGC1BQ86YN6 1023 aaKnown RBP6.17□□□□□ -1.42
CSMD3-201ENST00000297405 STK11IPQ8N1F8 1099 aa6.17□□□□□ -1.42
CSMD3-201ENST00000297405 MYH11P35749 1972 aa6.17□□□□□ -1.42
CSMD3-201ENST00000297405 TMC1Q8TDI8 760 aa6.16□□□□□ -1.42
CSMD3-201ENST00000297405 HMMRO75330 724 aa6.16□□□□□ -1.42
CSMD3-201ENST00000297405 USP8P40818 1118 aa6.15□□□□□ -1.42
CSMD3-201ENST00000297405 PES1O00541 588 aaKnown RBP6.15□□□□□ -1.42
CSMD3-201ENST00000297405 AK9Q5TCS8 1911 aa6.15□□□□□ -1.42
CSMD3-201ENST00000297405 DHX8Q14562 1220 aaKnown RBP6.15□□□□□ -1.42
CSMD3-201ENST00000297405 ISY1Q9ULR0 285 aaKnown RBP6.15□□□□□ -1.42
CSMD3-201ENST00000297405 CAGE1Q8TC20 777 aa6.15□□□□□ -1.42
CSMD3-201ENST00000297405 SLC4A1APQ9BWU0 796 aaKnown RBP6.15□□□□□ -1.43
CSMD3-201ENST00000297405 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.14□□□□□ -1.43
CSMD3-201ENST00000297405 SKOR2Q2VWA4 1001 aaPredicted RBP6.14□□□□□ -1.43
CSMD3-201ENST00000297405 RRP9O43818 475 aaKnown RBP6.14□□□□□ -1.43
CSMD3-201ENST00000297405 CHMP4CQ96CF2 233 aa6.14□□□□□ -1.43
CSMD3-201ENST00000297405 NEFHP12036 1026 aa6.14□□□□□ -1.43
CSMD3-201ENST00000297405 CCDC70Q6NSX1 233 aa6.14□□□□□ -1.43
CSMD3-201ENST00000297405 HSCBQ8IWL3 235 aa6.14□□□□□ -1.43
CSMD3-201ENST00000297405 DDX11L8A8MPP1 907 aa6.13□□□□□ -1.43
CSMD3-201ENST00000297405 PKNOX2Q96KN3 472 aa6.13□□□□□ -1.43
CSMD3-201ENST00000297405 EEA1Q15075 1411 aa6.13□□□□□ -1.43
CSMD3-201ENST00000297405 NINQ8N4C6 2090 aa6.13□□□□□ -1.43
CSMD3-201ENST00000297405 TPM4P67936 248 aa6.13□□□□□ -1.43
CSMD3-201ENST00000297405 TCHHQ07283 1943 aa6.13□□□□□ -1.43
CSMD3-201ENST00000297405 PODXL2Q9NZ53 605 aa6.13□□□□□ -1.43
CSMD3-201ENST00000297405 KNL1Q8NG31 2342 aa6.13□□□□□ -1.43
CSMD3-201ENST00000297405 CALD1Q05682 793 aaKnown RBP6.13□□□□□ -1.43
CSMD3-201ENST00000297405 MCCP23508 829 aa6.12□□□□□ -1.43
CSMD3-201ENST00000297405 TIMELESSQ9UNS1 1208 aa6.12□□□□□ -1.43
CSMD3-201ENST00000297405 TPM2P07951 284 aa6.12□□□□□ -1.43
CSMD3-201ENST00000297405 HMGN5P82970 282 aaKnown RBP6.12□□□□□ -1.43
CSMD3-201ENST00000297405 CDCA8Q53HL2 280 aa6.12□□□□□ -1.43
CSMD3-201ENST00000297405 ACBD3Q9H3P7 528 aa6.11□□□□□ -1.43
CSMD3-201ENST00000297405 TCERG1O14776 1098 aaKnown RBP6.11□□□□□ -1.43
CSMD3-201ENST00000297405 WDR43Q15061 677 aaKnown RBP eCLIP6.11□□□□□ -1.43
CSMD3-201ENST00000297405 CAVIN1Q6NZI2 390 aaKnown RBP6.11□□□□□ -1.43
CSMD3-201ENST00000297405 PHLDB1Q86UU1 1377 aa6.1□□□□□ -1.43
CSMD3-201ENST00000297405 CDR1P51861 262 aa6.1□□□□□ -1.43
CSMD3-201ENST00000297405 MICAL3Q7RTP6 2002 aa6.1□□□□□ -1.43
CSMD3-201ENST00000297405 ITGAEP38570 1179 aa6.09□□□□□ -1.43
CSMD3-201ENST00000297405 HMGB1P1B2RPK0 211 aaPredicted RBP6.09□□□□□ -1.43
CSMD3-201ENST00000297405 DCTN1Q14203 1278 aa6.09□□□□□ -1.43
CSMD3-201ENST00000297405 CHMP4AQ9BY43 222 aa6.09□□□□□ -1.43
CSMD3-201ENST00000297405 FANCIQ9NVI1 1328 aa6.09□□□□□ -1.43
CSMD3-201ENST00000297405 INCENPQ9NQS7 918 aa6.09□□□□□ -1.43
CSMD3-201ENST00000297405 CCDC191Q8NCU4 936 aa6.09□□□□□ -1.44
CSMD3-201ENST00000297405 NOC3LQ8WTT2 800 aaKnown RBP6.09□□□□□ -1.44
CSMD3-201ENST00000297405 ATP6V1DQ9Y5K8 247 aa6.09□□□□□ -1.44
CSMD3-201ENST00000297405 CCER2I3L3R5 266 aa6.09□□□□□ -1.44
CSMD3-201ENST00000297405 HSP90AB1P08238 724 aaKnown RBP6.09□□□□□ -1.44
CSMD3-201ENST00000297405 ARGLU1Q9NWB6 273 aaPredicted RBP6.08□□□□□ -1.44
CSMD3-201ENST00000297405 FAM50AQ14320 339 aaKnown RBP6.08□□□□□ -1.44
CSMD3-201ENST00000297405 RDXP35241 583 aaKnown RBP6.08□□□□□ -1.44
CSMD3-201ENST00000297405 RRP12Q5JTH9 1297 aaKnown RBP6.08□□□□□ -1.44
CSMD3-201ENST00000297405 VSIG10Q8N0Z9 540 aa6.08□□□□□ -1.44
CSMD3-201ENST00000297405 IPO9Q96P70 1041 aaKnown RBP6.07□□□□□ -1.44
CSMD3-201ENST00000297405 DRC7Q8IY82 874 aa6.07□□□□□ -1.44
CSMD3-201ENST00000297405 HSP90B1P14625 803 aaKnown RBP6.07□□□□□ -1.44
CSMD3-201ENST00000297405 KIF3AQ9Y496 699 aa6.07□□□□□ -1.44
CSMD3-201ENST00000297405 DIAPH3Q9NSV4 1193 aa6.07□□□□□ -1.44
CSMD3-201ENST00000297405 TRIM52Q96A61 297 aa6.06□□□□□ -1.44
CSMD3-201ENST00000297405 TPM3P06753 285 aa6.06□□□□□ -1.44
CSMD3-201ENST00000297405 PDCL2Q8N4E4 241 aa6.06□□□□□ -1.44
CSMD3-201ENST00000297405 FAM107BQ9H098 131 aa6.06□□□□□ -1.44
CSMD3-201ENST00000297405 MRS2Q9HD23 443 aa6.06□□□□□ -1.44
CSMD3-201ENST00000297405 SSR1P43307 286 aaKnown RBP6.06□□□□□ -1.44
CSMD3-201ENST00000297405 DEF6Q9H4E7 631 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 152.9 ms