RNA–Protein interactions for RNA: ENST00000284637.13

SH3RF1-201, Transcript of SH3 domain containing ring finger 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SH3RF1, Length 5,272 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-201ENST00000284637 MTUS2Q5JR59 1369 aa21.84■■□□□ 1.09
SH3RF1-201ENST00000284637 RRP7BPQ9NSQ0 103 aa21.83■■□□□ 1.08
SH3RF1-201ENST00000284637 NOP58Q9Y2X3 529 aaKnown RBP21.83■■□□□ 1.08
SH3RF1-201ENST00000284637 RBM19Q9Y4C8 960 aaKnown RBP21.83■■□□□ 1.08
SH3RF1-201ENST00000284637 PPM1GO15355 546 aaPredicted RBP21.81■■□□□ 1.08
SH3RF1-201ENST00000284637 CEP162Q5TB80 1403 aa21.8■■□□□ 1.08
SH3RF1-201ENST00000284637 DDRGK1Q96HY6 314 aa21.8■■□□□ 1.08
SH3RF1-201ENST00000284637 STAG3Q9UJ98 1225 aa21.78■■□□□ 1.08
SH3RF1-201ENST00000284637 TSHZ2Q9NRE2 1034 aa21.76■■□□□ 1.07
SH3RF1-201ENST00000284637 TSPY4P0CV99 314 aa21.76■■□□□ 1.07
SH3RF1-201ENST00000284637 TSPY10P0CW01 314 aa21.76■■□□□ 1.07
SH3RF1-201ENST00000284637 BECN1Q14457 450 aa21.68■■□□□ 1.06
SH3RF1-201ENST00000284637 PPP4R2Q9NY27 417 aa21.68■■□□□ 1.06
SH3RF1-201ENST00000284637 ESF1Q9H501 851 aaKnown RBP21.67■■□□□ 1.06
SH3RF1-201ENST00000284637 SIN3AQ96ST3 1273 aa21.65■■□□□ 1.06
SH3RF1-201ENST00000284637 LAS1LQ9Y4W2 734 aaKnown RBP21.64■■□□□ 1.06
SH3RF1-201ENST00000284637 TRIM44Q96DX7 344 aaPredicted RBP21.64■■□□□ 1.06
SH3RF1-201ENST00000284637 GOLGA3Q08378 1498 aa21.64■■□□□ 1.05
SH3RF1-201ENST00000284637 TNNT2P45379 298 aaPredicted RBP21.62■■□□□ 1.05
SH3RF1-201ENST00000284637 NAP1L5Q96NT1 182 aaPredicted RBP21.62■■□□□ 1.05
SH3RF1-201ENST00000284637 MYH16Q9H6N6 1097 aa21.61■■□□□ 1.05
SH3RF1-201ENST00000284637 PLPPR3Q6T4P5 718 aa21.6■■□□□ 1.05
SH3RF1-201ENST00000284637 RGL3Q3MIN7 710 aa21.6■■□□□ 1.05
SH3RF1-201ENST00000284637 B4GALNT3Q6L9W6 998 aa21.58■■□□□ 1.04
SH3RF1-201ENST00000284637 RSF1Q96T23 1441 aaPredicted RBP21.57■■□□□ 1.04
SH3RF1-201ENST00000284637 SENP3Q9H4L4 574 aaPredicted RBP21.57■■□□□ 1.04
SH3RF1-201ENST00000284637 EEA1Q15075 1411 aa21.55■■□□□ 1.04
SH3RF1-201ENST00000284637 TNIKQ9UKE5 1360 aa21.53■■□□□ 1.04
SH3RF1-201ENST00000284637 RGS3P49796 1198 aa21.51■■□□□ 1.03
SH3RF1-201ENST00000284637 NCLP19338 710 aaKnown RBP21.51■■□□□ 1.03
SH3RF1-201ENST00000284637 GOLGA6L22H0YM25 854 aa21.49■■□□□ 1.03
SH3RF1-201ENST00000284637 CARD11Q9BXL7 1154 aa21.49■■□□□ 1.03
SH3RF1-201ENST00000284637 NPM1P06748 294 aaKnown RBP eCLIP21.48■■□□□ 1.03
SH3RF1-201ENST00000284637 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.48■■□□□ 1.03
SH3RF1-201ENST00000284637 NEUROD2Q15784 382 aa21.46■■□□□ 1.03
SH3RF1-201ENST00000284637 KNSTRNQ9Y448 316 aa21.46■■□□□ 1.03
SH3RF1-201ENST00000284637 WRNQ14191 1432 aaPredicted RBP eCLIP21.43■■□□□ 1.02
SH3RF1-201ENST00000284637 CHMP7Q8WUX9 453 aaPredicted RBP21.41■■□□□ 1.02
SH3RF1-201ENST00000284637 FTSJ3Q8IY81 847 aaKnown RBP21.39■■□□□ 1.02
SH3RF1-201ENST00000284637 TPRNQ4KMQ1 711 aa21.39■■□□□ 1.01
SH3RF1-201ENST00000284637 PTMAP06454 111 aaKnown RBP21.39■■□□□ 1.01
SH3RF1-201ENST00000284637 FRAT1Q92837 279 aaPredicted RBP21.37■■□□□ 1.01
SH3RF1-201ENST00000284637 KCNH8Q96L42 1107 aa21.37■■□□□ 1.01
SH3RF1-201ENST00000284637 CFAP53Q96M91 514 aa21.37■■□□□ 1.01
SH3RF1-201ENST00000284637 CEP164Q9UPV0 1460 aa21.36■■□□□ 1.01
SH3RF1-201ENST00000284637 CFDP1Q9UEE9 299 aaPredicted RBP21.35■■□□□ 1.01
SH3RF1-201ENST00000284637 PLEKHD1A6NEE1 506 aa21.35■■□□□ 1.01
SH3RF1-201ENST00000284637 CC2D1BQ5T0F9 858 aaKnown RBP21.34■■□□□ 1.01
SH3RF1-201ENST00000284637 DNTTIP2Q5QJE6 756 aaKnown RBP21.33■■□□□ 1.01
SH3RF1-201ENST00000284637 CDCA8Q53HL2 280 aa21.33■■□□□ 1
SH3RF1-201ENST00000284637 PLEKHG5O94827 1062 aa21.32■■□□□ 1
SH3RF1-201ENST00000284637 L1TD1Q5T7N2 865 aaKnown RBP21.31■■□□□ 1
SH3RF1-201ENST00000284637 CCER2I3L3R5 266 aa21.31■■□□□ 1
SH3RF1-201ENST00000284637 CCNB3Q8WWL7 1395 aa21.3■■□□□ 1
SH3RF1-201ENST00000284637 ZBTB7CA1YPR0 619 aa21.28■■□□□ 1
SH3RF1-201ENST00000284637 KIF27Q86VH2 1401 aa21.26■□□□□ 0.99
SH3RF1-201ENST00000284637 CDK11BP21127 795 aaKnown RBP21.24■□□□□ 0.99
SH3RF1-201ENST00000284637 CASC1Q6TDU7 716 aa21.24■□□□□ 0.99
SH3RF1-201ENST00000284637 C14orf37Q86TY3 774 aa21.24■□□□□ 0.99
SH3RF1-201ENST00000284637 PPP1R15AO75807 674 aaPredicted RBP21.22■□□□□ 0.99
SH3RF1-201ENST00000284637 MAPK8IP3Q9UPT6 1336 aa21.22■□□□□ 0.99
SH3RF1-201ENST00000284637 PLCB2Q00722 1185 aa21.21■□□□□ 0.99
SH3RF1-201ENST00000284637 PNNQ9H307 717 aaKnown RBP21.21■□□□□ 0.99
SH3RF1-201ENST00000284637 IPO9Q96P70 1041 aaKnown RBP21.2■□□□□ 0.99
SH3RF1-201ENST00000284637 HSP90AB1P08238 724 aaKnown RBP21.2■□□□□ 0.98
SH3RF1-201ENST00000284637 HSPA5P11021 654 aaKnown RBP21.19■□□□□ 0.98
SH3RF1-201ENST00000284637 TIMELESSQ9UNS1 1208 aa21.19■□□□□ 0.98
SH3RF1-201ENST00000284637 RSPH6AQ9H0K4 717 aa21.18■□□□□ 0.98
SH3RF1-201ENST00000284637 SOGA1O94964 1423 aa21.18■□□□□ 0.98
SH3RF1-201ENST00000284637 SPRYD3Q8NCJ5 442 aa21.17■□□□□ 0.98
SH3RF1-201ENST00000284637 FANCIQ9NVI1 1328 aa21.17■□□□□ 0.98
SH3RF1-201ENST00000284637 DCAF11Q8TEB1 546 aa21.17■□□□□ 0.98
SH3RF1-201ENST00000284637 PRKCSHP14314 528 aaPredicted RBP21.16■□□□□ 0.98
SH3RF1-201ENST00000284637 ZRSR1Q15695 479 aaKnown RBP21.16■□□□□ 0.98
SH3RF1-201ENST00000284637 A0A0G2JS52 829 aa21.16■□□□□ 0.98
SH3RF1-201ENST00000284637 NUDCQ9Y266 331 aa21.16■□□□□ 0.98
SH3RF1-201ENST00000284637 USP35Q9P2H5 1018 aa21.14■□□□□ 0.98
SH3RF1-201ENST00000284637 U2SURPO15042 1029 aaKnown RBP21.13■□□□□ 0.97
SH3RF1-201ENST00000284637 KANK4Q5T7N3 995 aaPredicted RBP21.12■□□□□ 0.97
SH3RF1-201ENST00000284637 SETD5Q9C0A6 1442 aa21.1■□□□□ 0.97
SH3RF1-201ENST00000284637 HSCBQ8IWL3 235 aa21.1■□□□□ 0.97
SH3RF1-201ENST00000284637 TMF1P82094 1093 aa21.09■□□□□ 0.97
SH3RF1-201ENST00000284637 FOXD1Q16676 465 aa21.07■□□□□ 0.96
SH3RF1-201ENST00000284637 VSIG10Q8N0Z9 540 aa21.07■□□□□ 0.96
SH3RF1-201ENST00000284637 RB1CC1Q8TDY2 1594 aa21.07■□□□□ 0.96
SH3RF1-201ENST00000284637 MS4A1P11836 297 aa21.07■□□□□ 0.96
SH3RF1-201ENST00000284637 HSP90AA2PQ14568 343 aaPredicted RBP21.06■□□□□ 0.96
SH3RF1-201ENST00000284637 BAZ1BQ9UIG0 1483 aaKnown RBP21.06■□□□□ 0.96
SH3RF1-201ENST00000284637 MSNP26038 577 aaKnown RBP21.06■□□□□ 0.96
SH3RF1-201ENST00000284637 ARID4BQ4LE39 1312 aaPredicted RBP21.05■□□□□ 0.96
SH3RF1-201ENST00000284637 TCERG1O14776 1098 aaKnown RBP21.05■□□□□ 0.96
SH3RF1-201ENST00000284637 POGKQ9P215 609 aa21.03■□□□□ 0.96
SH3RF1-201ENST00000284637 TAOK2Q9UL54 1235 aa21.03■□□□□ 0.96
SH3RF1-201ENST00000284637 VPS8Q8N3P4 1428 aa21.03■□□□□ 0.96
SH3RF1-201ENST00000284637 RCAN3Q9UKA8 241 aa21.03■□□□□ 0.96
SH3RF1-201ENST00000284637 CHMP4BQ9H444 224 aaKnown RBP21.02■□□□□ 0.96
SH3RF1-201ENST00000284637 FHAD1B1AJZ9 1412 aa21.02■□□□□ 0.96
SH3RF1-201ENST00000284637 SLKQ9H2G2 1235 aaPredicted RBP21.01■□□□□ 0.95
SH3RF1-201ENST00000284637 RAB3GAP2Q9H2M9 1393 aa20.99■□□□□ 0.95
SH3RF1-201ENST00000284637 GZF1Q9H116 711 aaPredicted RBP20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms