RNA–Protein interactions for RNA: ENST00000277817.10

HERC4-201, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 4,371 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-201ENST00000277817 RIMBP3Q9UFD9 1639 aa5.07□□□□□ -1.6
HERC4-201ENST00000277817 MRC2Q9UBG0 1479 aa5.06□□□□□ -1.6
HERC4-201ENST00000277817 MKRN4PQ13434 485 aaPredicted RBP5.05□□□□□ -1.6
HERC4-201ENST00000277817 ABCA5Q8WWZ7 1642 aa5.04□□□□□ -1.6
HERC4-201ENST00000277817 CHD1O14646 1710 aa5.04□□□□□ -1.6
HERC4-201ENST00000277817 KIF13AQ9H1H9 1805 aa5.03□□□□□ -1.6
HERC4-201ENST00000277817 PBRM1Q86U86 1689 aa5.03□□□□□ -1.6
HERC4-201ENST00000277817 BIVM-ERCC5R4GMW8 1640 aa5.03□□□□□ -1.6
HERC4-201ENST00000277817 TRIM26Q12899 539 aaPredicted RBP5.03□□□□□ -1.6
HERC4-201ENST00000277817 PAXIP1Q6ZW49 1069 aaPredicted RBP5.03□□□□□ -1.6
HERC4-201ENST00000277817 PODXL2Q9NZ53 605 aa5.01□□□□□ -1.61
HERC4-201ENST00000277817 DNMBPQ6XZF7 1577 aa5.01□□□□□ -1.61
HERC4-201ENST00000277817 RGL2O15211 777 aa5□□□□□ -1.61
HERC4-201ENST00000277817 EIF4G3O43432 1585 aaKnown RBP5□□□□□ -1.61
HERC4-201ENST00000277817 BRPF1P55201 1214 aaPredicted RBP5□□□□□ -1.61
HERC4-201ENST00000277817 DMRT2Q9Y5R5 561 aa5□□□□□ -1.61
HERC4-201ENST00000277817 UBTFP17480 764 aaKnown RBP4.99□□□□□ -1.61
HERC4-201ENST00000277817 RSF1Q96T23 1441 aaPredicted RBP4.99□□□□□ -1.61
HERC4-201ENST00000277817 ABCC8Q09428 1581 aa4.98□□□□□ -1.61
HERC4-201ENST00000277817 C14orf37Q86TY3 774 aa4.98□□□□□ -1.61
HERC4-201ENST00000277817 SPRYD3Q8NCJ5 442 aa4.98□□□□□ -1.61
HERC4-201ENST00000277817 MROH2BQ7Z745 1585 aa4.98□□□□□ -1.61
HERC4-201ENST00000277817 ZBTB4Q9P1Z0 1013 aaPredicted RBP4.97□□□□□ -1.61
HERC4-201ENST00000277817 TRHP20396 242 aaPredicted RBP4.97□□□□□ -1.61
HERC4-201ENST00000277817 PPRC1Q5VV67 1664 aaKnown RBP4.97□□□□□ -1.61
HERC4-201ENST00000277817 URB2Q14146 1524 aaKnown RBP4.97□□□□□ -1.61
HERC4-201ENST00000277817 SPDYE4A6NLX3 237 aa4.95□□□□□ -1.62
HERC4-201ENST00000277817 WIZO95785 1651 aa4.95□□□□□ -1.62
HERC4-201ENST00000277817 NKX1-1Q15270 411 aaPredicted RBP4.95□□□□□ -1.62
HERC4-201ENST00000277817 HS6ST3Q8IZP7 471 aa4.94□□□□□ -1.62
HERC4-201ENST00000277817 IFT140Q96RY7 1462 aa4.93□□□□□ -1.62
HERC4-201ENST00000277817 GLI2P10070 1586 aa4.93□□□□□ -1.62
HERC4-201ENST00000277817 DHX30Q7L2E3 1194 aaKnown RBP eCLIP4.93□□□□□ -1.62
HERC4-201ENST00000277817 C1orf115Q9H7X2 142 aa4.92□□□□□ -1.62
HERC4-201ENST00000277817 PDS5BQ9NTI5 1447 aa4.92□□□□□ -1.62
HERC4-201ENST00000277817 NPM2Q86SE8 214 aaKnown RBP4.91□□□□□ -1.62
HERC4-201ENST00000277817 CFAP44Q96MT7 982 aa4.91□□□□□ -1.62
HERC4-201ENST00000277817 GTPBP6O43824 516 aaPredicted RBP4.91□□□□□ -1.62
HERC4-201ENST00000277817 MAPKBP1O60336 1514 aa4.9□□□□□ -1.62
HERC4-201ENST00000277817 CADPSQ9ULU8 1353 aa4.9□□□□□ -1.63
HERC4-201ENST00000277817 DCAF8L2P0C7V8 631 aa4.88□□□□□ -1.63
HERC4-201ENST00000277817 NBR1Q14596 966 aa4.88□□□□□ -1.63
HERC4-201ENST00000277817 ZNF219Q9P2Y4 722 aaPredicted RBP4.88□□□□□ -1.63
HERC4-201ENST00000277817 ARHGEF11O15085 1522 aa4.88□□□□□ -1.63
HERC4-201ENST00000277817 ADAMTS12P58397 1594 aa4.88□□□□□ -1.63
HERC4-201ENST00000277817 LOC105371045A0A1W2PR82 267 aa4.88□□□□□ -1.63
HERC4-201ENST00000277817 SPOCK2Q92563 424 aa4.88□□□□□ -1.63
HERC4-201ENST00000277817 ECM2O94769 699 aaPredicted RBP4.87□□□□□ -1.63
HERC4-201ENST00000277817 RNF25Q96BH1 459 aaPredicted RBP4.87□□□□□ -1.63
HERC4-201ENST00000277817 MAP3K4Q9Y6R4 1608 aa4.87□□□□□ -1.63
HERC4-201ENST00000277817 CEP164Q9UPV0 1460 aa4.87□□□□□ -1.63
HERC4-201ENST00000277817 MAGI1Q96QZ7 1491 aaPredicted RBP4.86□□□□□ -1.63
HERC4-201ENST00000277817 TOPBP1Q92547 1522 aa4.86□□□□□ -1.63
HERC4-201ENST00000277817 U3KPZ7 1027 aaPredicted RBP4.86□□□□□ -1.63
HERC4-201ENST00000277817 RUSC2Q8N2Y8 1516 aa4.85□□□□□ -1.63
HERC4-201ENST00000277817 RANGAP1P46060 587 aaPredicted RBP4.85□□□□□ -1.63
HERC4-201ENST00000277817 SUPT5HO00267 1087 aaKnown RBP4.85□□□□□ -1.63
HERC4-201ENST00000277817 NECTIN2Q92692 538 aa4.85□□□□□ -1.63
HERC4-201ENST00000277817 ARAP1Q96P48 1450 aa4.84□□□□□ -1.64
HERC4-201ENST00000277817 FANCD2Q9BXW9 1451 aa4.83□□□□□ -1.64
HERC4-201ENST00000277817 ERICH3Q5RHP9 1530 aa4.83□□□□□ -1.64
HERC4-201ENST00000277817 SYNJ1O43426 1573 aa4.83□□□□□ -1.64
HERC4-201ENST00000277817 TOP2BQ02880 1626 aa4.82□□□□□ -1.64
HERC4-201ENST00000277817 ABCA10Q8WWZ4 1543 aa4.82□□□□□ -1.64
HERC4-201ENST00000277817 NUP160Q12769 1436 aa4.82□□□□□ -1.64
HERC4-201ENST00000277817 ZMYND15Q9H091 742 aa4.82□□□□□ -1.64
HERC4-201ENST00000277817 SAMD1Q6SPF0 538 aaPredicted RBP4.81□□□□□ -1.64
HERC4-201ENST00000277817 KDM5BQ9UGL1 1544 aa4.81□□□□□ -1.64
HERC4-201ENST00000277817 SGIP1Q9BQI5 828 aa4.81□□□□□ -1.64
HERC4-201ENST00000277817 DIP2BQ9P265 1576 aa4.81□□□□□ -1.64
HERC4-201ENST00000277817 CUL7Q14999 1698 aa4.8□□□□□ -1.64
HERC4-201ENST00000277817 ONECUT3O60422 494 aaPredicted RBP4.8□□□□□ -1.64
HERC4-201ENST00000277817 ZC3H15Q8WU90 426 aaKnown RBP4.8□□□□□ -1.64
HERC4-201ENST00000277817 ZMYND10O75800 440 aa4.79□□□□□ -1.64
HERC4-201ENST00000277817 RGS22Q8NE09 1264 aa4.79□□□□□ -1.64
HERC4-201ENST00000277817 CEP170Q5SW79 1584 aa4.79□□□□□ -1.64
HERC4-201ENST00000277817 MSH5O43196 834 aa4.79□□□□□ -1.64
HERC4-201ENST00000277817 BCORL1Q5H9F3 1711 aa4.78□□□□□ -1.64
HERC4-201ENST00000277817 KDM6BO15054 1643 aa4.78□□□□□ -1.64
HERC4-201ENST00000277817 LMOD2Q6P5Q4 547 aa4.78□□□□□ -1.64
HERC4-201ENST00000277817 UHRF1BP1LA0JNW5 1464 aa4.77□□□□□ -1.65
HERC4-201ENST00000277817 FAM135AQ9P2D6 1515 aa4.76□□□□□ -1.65
HERC4-201ENST00000277817 KCNV2Q8TDN2 545 aa4.76□□□□□ -1.65
HERC4-201ENST00000277817 CUX1P39880 1505 aa4.76□□□□□ -1.65
HERC4-201ENST00000277817 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP4.76□□□□□ -1.65
HERC4-201ENST00000277817 HNRNPUL2Q1KMD3 747 aaKnown RBP4.76□□□□□ -1.65
HERC4-201ENST00000277817 PABPN1Q86U42 306 aaKnown RBP eCLIP4.76□□□□□ -1.65
HERC4-201ENST00000277817 ADCY10Q96PN6 1610 aa4.76□□□□□ -1.65
HERC4-201ENST00000277817 ERCC6Q03468 1493 aa4.75□□□□□ -1.65
HERC4-201ENST00000277817 CFAP43Q8NDM7 1665 aa4.75□□□□□ -1.65
HERC4-201ENST00000277817 KIAA0586Q9BVV6 1533 aa4.74□□□□□ -1.65
HERC4-201ENST00000277817 SYNJ2O15056 1496 aa4.74□□□□□ -1.65
HERC4-201ENST00000277817 POLA1P09884 1462 aaPredicted RBP4.74□□□□□ -1.65
HERC4-201ENST00000277817 CHGAP10645 457 aaKnown RBP4.74□□□□□ -1.65
HERC4-201ENST00000277817 ADAMTSL3P82987 1691 aa4.73□□□□□ -1.65
HERC4-201ENST00000277817 IGSF3O75054 1194 aa4.73□□□□□ -1.65
HERC4-201ENST00000277817 TRIM41Q8WV44 630 aa4.73□□□□□ -1.65
HERC4-201ENST00000277817 ERCC6L2Q5T890 1561 aa4.73□□□□□ -1.65
HERC4-201ENST00000277817 TESPA1A2RU30 521 aaPredicted RBP4.73□□□□□ -1.65
HERC4-201ENST00000277817 REREQ9P2R6 1566 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms