RNA–Protein interactions for RNA: ENST00000275233.11

SHPRH-201, Transcript of SNF2 histone linker PHD RING helicase, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHPRH, Length 6,649 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHPRH-201ENST00000275233 PPP1R15AO75807 674 aaPredicted RBP15.9■□□□□ 0.14
SHPRH-201ENST00000275233 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.89■□□□□ 0.13
SHPRH-201ENST00000275233 MTUS2Q5JR59 1369 aa15.89■□□□□ 0.13
SHPRH-201ENST00000275233 RGL3Q3MIN7 710 aa15.86■□□□□ 0.13
SHPRH-201ENST00000275233 ARID4BQ4LE39 1312 aaPredicted RBP15.86■□□□□ 0.13
SHPRH-201ENST00000275233 HAP1P54257 671 aaPredicted RBP15.83■□□□□ 0.13
SHPRH-201ENST00000275233 MYH16Q9H6N6 1097 aa15.81■□□□□ 0.12
SHPRH-201ENST00000275233 PPM1GO15355 546 aaPredicted RBP15.81■□□□□ 0.12
SHPRH-201ENST00000275233 TPRNQ4KMQ1 711 aa15.77■□□□□ 0.11
SHPRH-201ENST00000275233 TULP1O00294 542 aaPredicted RBP15.75■□□□□ 0.11
SHPRH-201ENST00000275233 LMOD2Q6P5Q4 547 aa15.73■□□□□ 0.11
SHPRH-201ENST00000275233 MIER1Q8N108 512 aa15.73■□□□□ 0.11
SHPRH-201ENST00000275233 EIF4G2P78344 907 aaKnown RBP eCLIP15.72■□□□□ 0.11
SHPRH-201ENST00000275233 LAS1LQ9Y4W2 734 aaKnown RBP15.72■□□□□ 0.11
SHPRH-201ENST00000275233 TAOK2Q9UL54 1235 aa15.71■□□□□ 0.11
SHPRH-201ENST00000275233 PLEKHD1A6NEE1 506 aa15.7■□□□□ 0.1
SHPRH-201ENST00000275233 CDK11BP21127 795 aaKnown RBP15.7■□□□□ 0.1
SHPRH-201ENST00000275233 NEUROD2Q15784 382 aa15.68■□□□□ 0.1
SHPRH-201ENST00000275233 CLIP1P30622 1438 aa15.67■□□□□ 0.1
SHPRH-201ENST00000275233 TNNT2P45379 298 aaPredicted RBP15.66■□□□□ 0.1
SHPRH-201ENST00000275233 ZCCHC6Q5VYS8 1495 aaKnown RBP15.65■□□□□ 0.1
SHPRH-201ENST00000275233 NCLP19338 710 aaKnown RBP15.62■□□□□ 0.09
SHPRH-201ENST00000275233 DCAF1Q9Y4B6 1507 aa15.61■□□□□ 0.09
SHPRH-201ENST00000275233 NPHP1O15259 732 aa15.61■□□□□ 0.09
SHPRH-201ENST00000275233 CFDP1Q9UEE9 299 aaPredicted RBP15.61■□□□□ 0.09
SHPRH-201ENST00000275233 KNSTRNQ9Y448 316 aa15.6■□□□□ 0.09
SHPRH-201ENST00000275233 CFAP53Q96M91 514 aa15.6■□□□□ 0.09
SHPRH-201ENST00000275233 CARD11Q9BXL7 1154 aa15.58■□□□□ 0.09
SHPRH-201ENST00000275233 POGKQ9P215 609 aa15.58■□□□□ 0.09
SHPRH-201ENST00000275233 FTSJ3Q8IY81 847 aaKnown RBP15.58■□□□□ 0.08
SHPRH-201ENST00000275233 MLECQ14165 292 aa15.57■□□□□ 0.08
SHPRH-201ENST00000275233 SOX12O15370 315 aa15.57■□□□□ 0.08
SHPRH-201ENST00000275233 TRHP20396 242 aaPredicted RBP15.56■□□□□ 0.08
SHPRH-201ENST00000275233 RSF1Q96T23 1441 aaPredicted RBP15.56■□□□□ 0.08
SHPRH-201ENST00000275233 CC2D1BQ5T0F9 858 aaKnown RBP15.56■□□□□ 0.08
SHPRH-201ENST00000275233 BECN1Q14457 450 aa15.53■□□□□ 0.08
SHPRH-201ENST00000275233 FRAT1Q92837 279 aaPredicted RBP15.53■□□□□ 0.08
SHPRH-201ENST00000275233 MAPK8IP3Q9UPT6 1336 aa15.52■□□□□ 0.08
SHPRH-201ENST00000275233 ERCC6Q03468 1493 aa15.52■□□□□ 0.07
SHPRH-201ENST00000275233 SUPT16HQ9Y5B9 1047 aaKnown RBP15.51■□□□□ 0.07
SHPRH-201ENST00000275233 U2SURPO15042 1029 aaKnown RBP15.51■□□□□ 0.07
SHPRH-201ENST00000275233 SIN3AQ96ST3 1273 aa15.5■□□□□ 0.07
SHPRH-201ENST00000275233 CASC1Q6TDU7 716 aa15.49■□□□□ 0.07
SHPRH-201ENST00000275233 CEP162Q5TB80 1403 aa15.49■□□□□ 0.07
SHPRH-201ENST00000275233 SAFB2Q14151 953 aaKnown RBP eCLIP15.48■□□□□ 0.071e-6■□□□□ 10.6
SHPRH-201ENST00000275233 GOLGA3Q08378 1498 aa15.48■□□□□ 0.07
SHPRH-201ENST00000275233 DDRGK1Q96HY6 314 aa15.48■□□□□ 0.07
SHPRH-201ENST00000275233 ZRSR1Q15695 479 aaKnown RBP15.48■□□□□ 0.07
SHPRH-201ENST00000275233 TRIM44Q96DX7 344 aaPredicted RBP15.48■□□□□ 0.07
SHPRH-201ENST00000275233 OS9Q13438 667 aaPredicted RBP15.48■□□□□ 0.07
SHPRH-201ENST00000275233 CDCA8Q53HL2 280 aa15.48■□□□□ 0.07
SHPRH-201ENST00000275233 RGS3P49796 1198 aa15.47■□□□□ 0.07
SHPRH-201ENST00000275233 NAP1L2Q9ULW6 460 aaPredicted RBP15.46■□□□□ 0.07
SHPRH-201ENST00000275233 GOLGA6L22H0YM25 854 aa15.46■□□□□ 0.06
SHPRH-201ENST00000275233 PTMAP06454 111 aaKnown RBP15.45■□□□□ 0.06
SHPRH-201ENST00000275233 RB1CC1Q8TDY2 1594 aa15.44■□□□□ 0.06
SHPRH-201ENST00000275233 GLIPR1L2Q4G1C9 344 aa15.44■□□□□ 0.06
SHPRH-201ENST00000275233 NUDCQ9Y266 331 aa15.44■□□□□ 0.06
SHPRH-201ENST00000275233 MYO15BQ96JP2 1530 aa15.44■□□□□ 0.06
SHPRH-201ENST00000275233 EIF4G1Q04637 1599 aaKnown RBP15.43■□□□□ 0.06
SHPRH-201ENST00000275233 BAZ1BQ9UIG0 1483 aaKnown RBP15.43■□□□□ 0.06
SHPRH-201ENST00000275233 PLCB2Q00722 1185 aa15.42■□□□□ 0.06
SHPRH-201ENST00000275233 GOLGA2Q08379 1002 aa15.4■□□□□ 0.06
SHPRH-201ENST00000275233 DCAF11Q8TEB1 546 aa15.39■□□□□ 0.05
SHPRH-201ENST00000275233 WRNQ14191 1432 aaPredicted RBP eCLIP15.39■□□□□ 0.05
SHPRH-201ENST00000275233 FGD1P98174 961 aa15.39■□□□□ 0.05
SHPRH-201ENST00000275233 SRPK2P78362 688 aaKnown RBP15.39■□□□□ 0.05
SHPRH-201ENST00000275233 DNTTIP2Q5QJE6 756 aaKnown RBP15.39■□□□□ 0.05
SHPRH-201ENST00000275233 STK26Q9P289 416 aa15.38■□□□□ 0.05
SHPRH-201ENST00000275233 KCNJ4P48050 445 aa15.38■□□□□ 0.05
SHPRH-201ENST00000275233 KIF27Q86VH2 1401 aa15.37■□□□□ 0.05
SHPRH-201ENST00000275233 NCBP3Q53F19 620 aaKnown RBP15.37■□□□□ 0.05
SHPRH-201ENST00000275233 HSP90AB1P08238 724 aaKnown RBP15.34■□□□□ 0.05
SHPRH-201ENST00000275233 CCNB3Q8WWL7 1395 aa15.33■□□□□ 0.05
SHPRH-201ENST00000275233 GGT6Q6P531 493 aa15.33■□□□□ 0.05
SHPRH-201ENST00000275233 ISY1Q9ULR0 285 aaKnown RBP15.33■□□□□ 0.04
SHPRH-201ENST00000275233 SPRYD3Q8NCJ5 442 aa15.32■□□□□ 0.04
SHPRH-201ENST00000275233 PAK3O75914 559 aaPredicted RBP15.32■□□□□ 0.04
SHPRH-201ENST00000275233 APBB1O00213 710 aa15.3■□□□□ 0.04
SHPRH-201ENST00000275233 CLSTN1O94985 981 aa15.3■□□□□ 0.04
SHPRH-201ENST00000275233 TMF1P82094 1093 aa15.3■□□□□ 0.04
SHPRH-201ENST00000275233 B4GALNT3Q6L9W6 998 aa15.3■□□□□ 0.04
SHPRH-201ENST00000275233 CCDC180Q9P1Z9 1646 aa15.3■□□□□ 0.04
SHPRH-201ENST00000275233 FOXD1Q16676 465 aa15.3■□□□□ 0.04
SHPRH-201ENST00000275233 ZNF330Q9Y3S2 320 aaPredicted RBP15.3■□□□□ 0.04
SHPRH-201ENST00000275233 RTN4Q9NQC3 1192 aaKnown RBP15.29■□□□□ 0.04
SHPRH-201ENST00000275233 KANK1Q14678 1352 aa15.29■□□□□ 0.04
SHPRH-201ENST00000275233 MORC1Q86VD1 984 aa15.28■□□□□ 0.04
SHPRH-201ENST00000275233 ANP32EQ9BTT0 268 aa15.27■□□□□ 0.03
SHPRH-201ENST00000275233 CEP164Q9UPV0 1460 aa15.26■□□□□ 0.03
SHPRH-201ENST00000275233 EEA1Q15075 1411 aa15.26■□□□□ 0.03
SHPRH-201ENST00000275233 PNNQ9H307 717 aaKnown RBP15.25■□□□□ 0.03
SHPRH-201ENST00000275233 RTF1Q92541 710 aaKnown RBP15.24■□□□□ 0.03
SHPRH-201ENST00000275233 PPP4R2Q9NY27 417 aa15.23■□□□□ 0.03
SHPRH-201ENST00000275233 CSB-PGBD3P0DP91 1061 aa15.22■□□□□ 0.03
SHPRH-201ENST00000275233 HDGFP51858 240 aaKnown RBP15.22■□□□□ 0.03
SHPRH-201ENST00000275233 AMER1Q5JTC6 1135 aaPredicted RBP15.22■□□□□ 0.03
SHPRH-201ENST00000275233 NAP1L5Q96NT1 182 aaPredicted RBP15.21■□□□□ 0.03
SHPRH-201ENST00000275233 TNIKQ9UKE5 1360 aa15.21■□□□□ 0.03
SHPRH-201ENST00000275233 NUTM2DQ5VT03 806 aaPredicted RBP15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms