RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 ZBTB7CA1YPR0 619 aa15.34■□□□□ 0.05
USP53-201ENST00000274030 KCNH8Q96L42 1107 aa15.33■□□□□ 0.04
USP53-201ENST00000274030 RGL3Q3MIN7 710 aa15.3■□□□□ 0.04
USP53-201ENST00000274030 DCAF1Q9Y4B6 1507 aa15.29■□□□□ 0.04
USP53-201ENST00000274030 C14orf37Q86TY3 774 aa15.28■□□□□ 0.04
USP53-201ENST00000274030 EIF4G2P78344 907 aaKnown RBP eCLIP15.27■□□□□ 0.03
USP53-201ENST00000274030 CLIP1P30622 1438 aa15.25■□□□□ 0.03
USP53-201ENST00000274030 PPP1R15AO75807 674 aaPredicted RBP15.21■□□□□ 0.03
USP53-201ENST00000274030 MYH16Q9H6N6 1097 aa15.2■□□□□ 0.02
USP53-201ENST00000274030 PPM1GO15355 546 aaPredicted RBP15.18■□□□□ 0.02
USP53-201ENST00000274030 ZCCHC6Q5VYS8 1495 aaKnown RBP15.16■□□□□ 0.02
USP53-201ENST00000274030 PLEKHD1A6NEE1 506 aa15.16■□□□□ 0.02
USP53-201ENST00000274030 NEUROD2Q15784 382 aa15.14■□□□□ 0.01
USP53-201ENST00000274030 SUPT16HQ9Y5B9 1047 aaKnown RBP15.1■□□□□ 0.01
USP53-201ENST00000274030 TPRNQ4KMQ1 711 aa15.1■□□□□ 0.01
USP53-201ENST00000274030 ARID4BQ4LE39 1312 aaPredicted RBP15.1■□□□□ 0.01
USP53-201ENST00000274030 CFDP1Q9UEE9 299 aaPredicted RBP15.1■□□□□ 0.01
USP53-201ENST00000274030 MYO15BQ96JP2 1530 aa15.09■□□□□ 0.01
USP53-201ENST00000274030 SIN3AQ96ST3 1273 aa15.08■□□□□ 0.01
USP53-201ENST00000274030 CEP162Q5TB80 1403 aa15.08■□□□□ 0
USP53-201ENST00000274030 CARD11Q9BXL7 1154 aa15.08■□□□□ 0
USP53-201ENST00000274030 KNSTRNQ9Y448 316 aa15.08■□□□□ 0
USP53-201ENST00000274030 LAS1LQ9Y4W2 734 aaKnown RBP15.07■□□□□ 0
USP53-201ENST00000274030 TNNT2P45379 298 aaPredicted RBP15.07■□□□□ 0
USP53-201ENST00000274030 HAP1P54257 671 aaPredicted RBP15.05■□□□□ 0
USP53-201ENST00000274030 CFAP53Q96M91 514 aa15.04■□□□□ -0
USP53-201ENST00000274030 NCLP19338 710 aaKnown RBP15.04■□□□□ -0
USP53-201ENST00000274030 RSF1Q96T23 1441 aaPredicted RBP15.04■□□□□ -0
USP53-201ENST00000274030 LMOD2Q6P5Q4 547 aa15.03■□□□□ -0
USP53-201ENST00000274030 BECN1Q14457 450 aa15.02■□□□□ -0
USP53-201ENST00000274030 FTSJ3Q8IY81 847 aaKnown RBP15.01□□□□□ -0.01
USP53-201ENST00000274030 GOLGA3Q08378 1498 aa15.01□□□□□ -0.01
USP53-201ENST00000274030 CC2D1BQ5T0F9 858 aaKnown RBP15□□□□□ -0.01
USP53-201ENST00000274030 FRAT1Q92837 279 aaPredicted RBP15□□□□□ -0.01
USP53-201ENST00000274030 RGS3P49796 1198 aa14.99□□□□□ -0.01
USP53-201ENST00000274030 TAOK2Q9UL54 1235 aa14.99□□□□□ -0.01
USP53-201ENST00000274030 DDRGK1Q96HY6 314 aa14.98□□□□□ -0.01
USP53-201ENST00000274030 CDK11BP21127 795 aaKnown RBP14.98□□□□□ -0.01
USP53-201ENST00000274030 GLIPR1L2Q4G1C9 344 aa14.98□□□□□ -0.01
USP53-201ENST00000274030 POGKQ9P215 609 aa14.97□□□□□ -0.01
USP53-201ENST00000274030 CDCA8Q53HL2 280 aa14.97□□□□□ -0.01
USP53-201ENST00000274030 TRIM44Q96DX7 344 aaPredicted RBP14.96□□□□□ -0.01
USP53-201ENST00000274030 WRNQ14191 1432 aaPredicted RBP eCLIP14.96□□□□□ -0.01
USP53-201ENST00000274030 MAPK8IP3Q9UPT6 1336 aa14.95□□□□□ -0.02
USP53-201ENST00000274030 GOLGA6L22H0YM25 854 aa14.94□□□□□ -0.02
USP53-201ENST00000274030 TULP1O00294 542 aaPredicted RBP14.94□□□□□ -0.02
USP53-201ENST00000274030 U2SURPO15042 1029 aaKnown RBP14.94□□□□□ -0.02
USP53-201ENST00000274030 SOX12O15370 315 aa14.92□□□□□ -0.02
USP53-201ENST00000274030 B4GALNT3Q6L9W6 998 aa14.9□□□□□ -0.02
USP53-201ENST00000274030 NUDCQ9Y266 331 aa14.9□□□□□ -0.02
USP53-201ENST00000274030 KIF27Q86VH2 1401 aa14.9□□□□□ -0.02
USP53-201ENST00000274030 DCAF11Q8TEB1 546 aa14.89□□□□□ -0.03
USP53-201ENST00000274030 PTMAP06454 111 aaKnown RBP14.89□□□□□ -0.03
USP53-201ENST00000274030 EEA1Q15075 1411 aa14.89□□□□□ -0.03
USP53-201ENST00000274030 SAFB2Q14151 953 aaKnown RBP eCLIP14.88□□□□□ -0.03
USP53-201ENST00000274030 CASC1Q6TDU7 716 aa14.88□□□□□ -0.03
USP53-201ENST00000274030 MLECQ14165 292 aa14.88□□□□□ -0.03
USP53-201ENST00000274030 ZRSR1Q15695 479 aaKnown RBP14.87□□□□□ -0.03
USP53-201ENST00000274030 TNIKQ9UKE5 1360 aa14.86□□□□□ -0.03
USP53-201ENST00000274030 BAZ1BQ9UIG0 1483 aaKnown RBP14.86□□□□□ -0.03
USP53-201ENST00000274030 PLCB2Q00722 1185 aa14.85□□□□□ -0.03
USP53-201ENST00000274030 RTN4Q9NQC3 1192 aaKnown RBP14.85□□□□□ -0.03
USP53-201ENST00000274030 PPP4R2Q9NY27 417 aa14.85□□□□□ -0.03
USP53-201ENST00000274030 OS9Q13438 667 aaPredicted RBP14.84□□□□□ -0.03
USP53-201ENST00000274030 DNTTIP2Q5QJE6 756 aaKnown RBP14.84□□□□□ -0.03
USP53-201ENST00000274030 NPHP1O15259 732 aa14.83□□□□□ -0.04
USP53-201ENST00000274030 ANP32EQ9BTT0 268 aa14.83□□□□□ -0.04
USP53-201ENST00000274030 CEP164Q9UPV0 1460 aa14.82□□□□□ -0.04
USP53-201ENST00000274030 FOXD1Q16676 465 aa14.81□□□□□ -0.04
USP53-201ENST00000274030 CCNB3Q8WWL7 1395 aa14.81□□□□□ -0.04
USP53-201ENST00000274030 NAP1L2Q9ULW6 460 aaPredicted RBP14.81□□□□□ -0.04
USP53-201ENST00000274030 SRPK2P78362 688 aaKnown RBP14.8□□□□□ -0.04
USP53-201ENST00000274030 FGD1P98174 961 aa14.8□□□□□ -0.04
USP53-201ENST00000274030 RB1CC1Q8TDY2 1594 aa14.79□□□□□ -0.04
USP53-201ENST00000274030 TMF1P82094 1093 aa14.79□□□□□ -0.04
USP53-201ENST00000274030 KCNJ4P48050 445 aa14.78□□□□□ -0.04
USP53-201ENST00000274030 HSP90AB1P08238 724 aaKnown RBP14.78□□□□□ -0.04
USP53-201ENST00000274030 SPRYD3Q8NCJ5 442 aa14.78□□□□□ -0.04
USP53-201ENST00000274030 STK26Q9P289 416 aa14.77□□□□□ -0.04
USP53-201ENST00000274030 ERCC6Q03468 1493 aa14.77□□□□□ -0.05
USP53-201ENST00000274030 GGT6Q6P531 493 aa14.76□□□□□ -0.05
USP53-201ENST00000274030 NOP58Q9Y2X3 529 aaKnown RBP14.76□□□□□ -0.05
USP53-201ENST00000274030 TRHP20396 242 aaPredicted RBP14.75□□□□□ -0.05
USP53-201ENST00000274030 MORC1Q86VD1 984 aa14.75□□□□□ -0.05
USP53-201ENST00000274030 EIF4G1Q04637 1599 aaKnown RBP14.75□□□□□ -0.05
USP53-201ENST00000274030 APBB1O00213 710 aa14.74□□□□□ -0.05
USP53-201ENST00000274030 HSPA5P11021 654 aaKnown RBP14.73□□□□□ -0.05
USP53-201ENST00000274030 SOGA1O94964 1423 aa14.72□□□□□ -0.05
USP53-201ENST00000274030 NAP1L5Q96NT1 182 aaPredicted RBP14.72□□□□□ -0.05
USP53-201ENST00000274030 CARMIL1Q5VZK9 1371 aa14.71□□□□□ -0.05
USP53-201ENST00000274030 PKD2Q13563 968 aa14.71□□□□□ -0.05
USP53-201ENST00000274030 GOLGA2Q08379 1002 aa14.7□□□□□ -0.06
USP53-201ENST00000274030 KANK4Q5T7N3 995 aaPredicted RBP14.7□□□□□ -0.06
USP53-201ENST00000274030 MS4A1P11836 297 aa14.69□□□□□ -0.06
USP53-201ENST00000274030 CUX2O14529 1486 aa14.69□□□□□ -0.06
USP53-201ENST00000274030 ERICH6BQ5W0A0 696 aa14.68□□□□□ -0.06
USP53-201ENST00000274030 CHMP4BQ9H444 224 aaKnown RBP14.68□□□□□ -0.06
USP53-201ENST00000274030 CCDC180Q9P1Z9 1646 aa14.68□□□□□ -0.06
USP53-201ENST00000274030 PNNQ9H307 717 aaKnown RBP14.68□□□□□ -0.06
USP53-201ENST00000274030 KANK1Q14678 1352 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms