RNA–Protein interactions for RNA: ENST00000257290.9

PDGFRA-201, Transcript of platelet derived growth factor receptor alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFRA, Length 6,576 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-201ENST00000257290 RSF1Q96T23 1441 aaPredicted RBP9.11□□□□□ -0.95
PDGFRA-201ENST00000257290 LOC105371045A0A1W2PR82 267 aa9.11□□□□□ -0.95
PDGFRA-201ENST00000257290 NOP58Q9Y2X3 529 aaKnown RBP9.11□□□□□ -0.95
PDGFRA-201ENST00000257290 TIMELESSQ9UNS1 1208 aa9.11□□□□□ -0.95
PDGFRA-201ENST00000257290 RBM19Q9Y4C8 960 aaKnown RBP9.11□□□□□ -0.95
PDGFRA-201ENST00000257290 BRD2P25440 801 aaKnown RBP9.11□□□□□ -0.95
PDGFRA-201ENST00000257290 SUPT16HQ9Y5B9 1047 aaKnown RBP9.09□□□□□ -0.95
PDGFRA-201ENST00000257290 PPM1GO15355 546 aaPredicted RBP9.09□□□□□ -0.95
PDGFRA-201ENST00000257290 BCL11BQ9C0K0 894 aaPredicted RBP9.08□□□□□ -0.96
PDGFRA-201ENST00000257290 ZMYND15Q9H091 742 aa9.08□□□□□ -0.96
PDGFRA-201ENST00000257290 PLPPR3Q6T4P5 718 aa9.08□□□□□ -0.96
PDGFRA-201ENST00000257290 BAZ1AQ9NRL2 1556 aaPredicted RBP9.08□□□□□ -0.96
PDGFRA-201ENST00000257290 HSP90B1P14625 803 aaKnown RBP9.06□□□□□ -0.96
PDGFRA-201ENST00000257290 PNNQ9H307 717 aaKnown RBP9.04□□□□□ -0.96
PDGFRA-201ENST00000257290 PAXIP1Q6ZW49 1069 aaPredicted RBP9.04□□□□□ -0.96
PDGFRA-201ENST00000257290 RBM10P98175 930 aaKnown RBP9.03□□□□□ -0.96
PDGFRA-201ENST00000257290 DNTTIP2Q5QJE6 756 aaKnown RBP9.02□□□□□ -0.97
PDGFRA-201ENST00000257290 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.01□□□□□ -0.97
PDGFRA-201ENST00000257290 TPRNQ4KMQ1 711 aa9□□□□□ -0.97
PDGFRA-201ENST00000257290 FGD1P98174 961 aa9□□□□□ -0.97
PDGFRA-201ENST00000257290 BAZ1BQ9UIG0 1483 aaKnown RBP9□□□□□ -0.97
PDGFRA-201ENST00000257290 CCDC9Q9Y3X0 531 aaKnown RBP8.99□□□□□ -0.97
PDGFRA-201ENST00000257290 PTMAP06454 111 aaKnown RBP8.99□□□□□ -0.97
PDGFRA-201ENST00000257290 PATL2C9JE40 543 aaKnown RBP8.98□□□□□ -0.97
PDGFRA-201ENST00000257290 TNNT3P45378 269 aaPredicted RBP8.98□□□□□ -0.97
PDGFRA-201ENST00000257290 CECR2Q9BXF3 1484 aa8.96□□□□□ -0.97
PDGFRA-201ENST00000257290 BBXQ8WY36 941 aaPredicted RBP8.96□□□□□ -0.98
PDGFRA-201ENST00000257290 RRP9O43818 475 aaKnown RBP8.96□□□□□ -0.98
PDGFRA-201ENST00000257290 ITGAEP38570 1179 aa8.94□□□□□ -0.98
PDGFRA-201ENST00000257290 L1TD1Q5T7N2 865 aaKnown RBP8.94□□□□□ -0.98
PDGFRA-201ENST00000257290 DDRGK1Q96HY6 314 aa8.93□□□□□ -0.98
PDGFRA-201ENST00000257290 DHX37Q8IY37 1157 aaKnown RBP8.93□□□□□ -0.98
PDGFRA-201ENST00000257290 ARID4BQ4LE39 1312 aaPredicted RBP8.93□□□□□ -0.98
PDGFRA-201ENST00000257290 CHMP4AQ9BY43 222 aa8.92□□□□□ -0.98
PDGFRA-201ENST00000257290 LAS1LQ9Y4W2 734 aaKnown RBP8.92□□□□□ -0.98
PDGFRA-201ENST00000257290 NAP1L2Q9ULW6 460 aaPredicted RBP8.92□□□□□ -0.98
PDGFRA-201ENST00000257290 MROH2BQ7Z745 1585 aa8.91□□□□□ -0.98
PDGFRA-201ENST00000257290 HNRNPUL2Q1KMD3 747 aaKnown RBP8.91□□□□□ -0.98
PDGFRA-201ENST00000257290 USP35Q9P2H5 1018 aa8.91□□□□□ -0.98
PDGFRA-201ENST00000257290 SMARCA2P51531 1590 aa8.91□□□□□ -0.98
PDGFRA-201ENST00000257290 FANCIQ9NVI1 1328 aa8.91□□□□□ -0.98
PDGFRA-201ENST00000257290 CALRP27797 417 aaKnown RBP8.9□□□□□ -0.98
PDGFRA-201ENST00000257290 IL27Q8NEV9 243 aa8.9□□□□□ -0.98
PDGFRA-201ENST00000257290 EEA1Q15075 1411 aa8.9□□□□□ -0.98
PDGFRA-201ENST00000257290 MIER1Q8N108 512 aa8.88□□□□□ -0.99
PDGFRA-201ENST00000257290 FBXO3Q9UK99 471 aa8.88□□□□□ -0.99
PDGFRA-201ENST00000257290 ZNF526Q8TF50 670 aaPredicted RBP8.88□□□□□ -0.99
PDGFRA-201ENST00000257290 TOP2AP11388 1531 aaKnown RBP8.87□□□□□ -0.99
PDGFRA-201ENST00000257290 WRNQ14191 1432 aaPredicted RBP eCLIP8.86□□□□□ -0.99
PDGFRA-201ENST00000257290 BCCIPQ9P287 314 aaKnown RBP eCLIP8.86□□□□□ -0.99
PDGFRA-201ENST00000257290 MAP7D2Q96T17 732 aa8.85□□□□□ -0.99
PDGFRA-201ENST00000257290 AAMPQ13685 434 aa8.84□□□□□ -0.99
PDGFRA-201ENST00000257290 SMARCA4P51532 1647 aa8.83□□□□□ -1
PDGFRA-201ENST00000257290 WWC1Q8IX03 1113 aa8.82□□□□□ -1
PDGFRA-201ENST00000257290 FAM43AQ8N2R8 423 aa8.82□□□□□ -1
PDGFRA-201ENST00000257290 ANP32CO43423 234 aa8.82□□□□□ -1
PDGFRA-201ENST00000257290 CCDC88BA6NC98 1476 aa8.82□□□□□ -1
PDGFRA-201ENST00000257290 TAOK2Q9UL54 1235 aa8.81□□□□□ -1
PDGFRA-201ENST00000257290 TAF3Q5VWG9 929 aa8.81□□□□□ -1
PDGFRA-201ENST00000257290 WIZO95785 1651 aa8.8□□□□□ -1
PDGFRA-201ENST00000257290 GOLGA3Q08378 1498 aa8.8□□□□□ -1
PDGFRA-201ENST00000257290 IRX3P78415 501 aaPredicted RBP8.8□□□□□ -1
PDGFRA-201ENST00000257290 MTERF4Q7Z6M4 381 aaKnown RBP8.79□□□□□ -1
PDGFRA-201ENST00000257290 GSE1Q14687 1217 aa8.79□□□□□ -1
PDGFRA-201ENST00000257290 CHMP4BQ9H444 224 aaKnown RBP8.78□□□□□ -1
PDGFRA-201ENST00000257290 MSNP26038 577 aaKnown RBP8.78□□□□□ -1
PDGFRA-201ENST00000257290 PLCD4Q9BRC7 762 aa8.78□□□□□ -1
PDGFRA-201ENST00000257290 FBLN2P98095 1184 aa8.78□□□□□ -1
PDGFRA-201ENST00000257290 FAM50AQ14320 339 aaKnown RBP8.78□□□□□ -1
PDGFRA-201ENST00000257290 CC2D1BQ5T0F9 858 aaKnown RBP8.77□□□□□ -1.01
PDGFRA-201ENST00000257290 PSMD1Q99460 953 aa8.77□□□□□ -1.01
PDGFRA-201ENST00000257290 TPM2P07951 284 aa8.77□□□□□ -1.01
PDGFRA-201ENST00000257290 CLGNO14967 610 aa8.77□□□□□ -1.01
PDGFRA-201ENST00000257290 ARID3AQ99856 593 aa8.76□□□□□ -1.01
PDGFRA-201ENST00000257290 IPO4Q8TEX9 1081 aaKnown RBP8.76□□□□□ -1.01
PDGFRA-201ENST00000257290 KIF27Q86VH2 1401 aa8.76□□□□□ -1.01
PDGFRA-201ENST00000257290 IRX6P78412 446 aaPredicted RBP8.76□□□□□ -1.01
PDGFRA-201ENST00000257290 FTSJ3Q8IY81 847 aaKnown RBP8.75□□□□□ -1.01
PDGFRA-201ENST00000257290 CEP164Q9UPV0 1460 aa8.75□□□□□ -1.01
PDGFRA-201ENST00000257290 GOLGA6L3A6NEY3 463 aa8.75□□□□□ -1.01
PDGFRA-201ENST00000257290 IPO9Q96P70 1041 aaKnown RBP8.75□□□□□ -1.01
PDGFRA-201ENST00000257290 ATAD2BQ9ULI0 1458 aa8.75□□□□□ -1.01
PDGFRA-201ENST00000257290 PPP4R2Q9NY27 417 aa8.73□□□□□ -1.01
PDGFRA-201ENST00000257290 CLSTN1O94985 981 aa8.73□□□□□ -1.01
PDGFRA-201ENST00000257290 FAM193AP78312 1265 aa8.73□□□□□ -1.01
PDGFRA-201ENST00000257290 OS9Q13438 667 aaPredicted RBP8.73□□□□□ -1.01
PDGFRA-201ENST00000257290 AXDND1Q5T1B0 1012 aaPredicted RBP8.73□□□□□ -1.01
PDGFRA-201ENST00000257290 ZNF771Q7L3S4 317 aaPredicted RBP8.73□□□□□ -1.01
PDGFRA-201ENST00000257290 CLIP1P30622 1438 aa8.73□□□□□ -1.01
PDGFRA-201ENST00000257290 TNIKQ9UKE5 1360 aa8.72□□□□□ -1.01
PDGFRA-201ENST00000257290 P3H3Q8IVL6 736 aa8.72□□□□□ -1.01
PDGFRA-201ENST00000257290 BECN1Q14457 450 aa8.71□□□□□ -1.02
PDGFRA-201ENST00000257290 CEP162Q5TB80 1403 aa8.7□□□□□ -1.02
PDGFRA-201ENST00000257290 GOLGA6L6A8MZA4 724 aa8.7□□□□□ -1.02
PDGFRA-201ENST00000257290 GOLGA6L22H0YM25 854 aa8.7□□□□□ -1.02
PDGFRA-201ENST00000257290 PLCD3Q8N3E9 789 aa8.7□□□□□ -1.02
PDGFRA-201ENST00000257290 CCDC66A2RUB6 948 aa8.7□□□□□ -1.02
PDGFRA-201ENST00000257290 UPF2Q9HAU5 1272 aaKnown RBP8.7□□□□□ -1.02
PDGFRA-201ENST00000257290 PDCL3Q9H2J4 239 aa8.69□□□□□ -1.02
PDGFRA-201ENST00000257290 BRPF3Q9ULD4 1205 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms