RNA–Protein interactions for RNA: ENST00000225964.9

COL1A1-201, Transcript of collagen type I alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL1A1, Length 6,727 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-201ENST00000225964 NBR1Q14596 966 aa17.59■□□□□ 0.41
COL1A1-201ENST00000225964 TULP1O00294 542 aaPredicted RBP17.58■□□□□ 0.4
COL1A1-201ENST00000225964 MTUS2Q5JR59 1369 aa17.58■□□□□ 0.4
COL1A1-201ENST00000225964 MRS2Q9HD23 443 aa17.57■□□□□ 0.4
COL1A1-201ENST00000225964 IRX6P78412 446 aaPredicted RBP17.5■□□□□ 0.39
COL1A1-201ENST00000225964 HIRIP3Q9BW71 556 aaPredicted RBP17.49■□□□□ 0.39
COL1A1-201ENST00000225964 RRP7BPQ9NSQ0 103 aa17.49■□□□□ 0.39
COL1A1-201ENST00000225964 PPM1GO15355 546 aaPredicted RBP17.49■□□□□ 0.39
COL1A1-201ENST00000225964 NPHP1O15259 732 aa17.48■□□□□ 0.39
COL1A1-201ENST00000225964 NCLP19338 710 aaKnown RBP17.48■□□□□ 0.39
COL1A1-201ENST00000225964 LMOD2Q6P5Q4 547 aa17.46■□□□□ 0.39
COL1A1-201ENST00000225964 TRHP20396 242 aaPredicted RBP17.45■□□□□ 0.38
COL1A1-201ENST00000225964 RGL3Q3MIN7 710 aa17.45■□□□□ 0.38
COL1A1-201ENST00000225964 TPRNQ4KMQ1 711 aa17.44■□□□□ 0.38
COL1A1-201ENST00000225964 LAS1LQ9Y4W2 734 aaKnown RBP17.42■□□□□ 0.38
COL1A1-201ENST00000225964 CFAP53Q96M91 514 aa17.41■□□□□ 0.38
COL1A1-201ENST00000225964 TAOK2Q9UL54 1235 aa17.41■□□□□ 0.38
COL1A1-201ENST00000225964 GLIPR1L2Q4G1C9 344 aa17.4■□□□□ 0.38
COL1A1-201ENST00000225964 PLEKHD1A6NEE1 506 aa17.39■□□□□ 0.37
COL1A1-201ENST00000225964 EIF4G2P78344 907 aaKnown RBP eCLIP17.39■□□□□ 0.37
COL1A1-201ENST00000225964 ZRSR1Q15695 479 aaKnown RBP17.38■□□□□ 0.37
COL1A1-201ENST00000225964 CASC1Q6TDU7 716 aa17.38■□□□□ 0.37
COL1A1-201ENST00000225964 BECN1Q14457 450 aa17.37■□□□□ 0.37
COL1A1-201ENST00000225964 SENP3-EIF4A1A0A087X0R7 540 aa17.36■□□□□ 0.37
COL1A1-201ENST00000225964 FTSJ3Q8IY81 847 aaKnown RBP17.34■□□□□ 0.37
COL1A1-201ENST00000225964 KNSTRNQ9Y448 316 aa17.32■□□□□ 0.36
COL1A1-201ENST00000225964 GOLGA6L22H0YM25 854 aa17.32■□□□□ 0.36
COL1A1-201ENST00000225964 POGKQ9P215 609 aa17.32■□□□□ 0.36
COL1A1-201ENST00000225964 DDRGK1Q96HY6 314 aa17.32■□□□□ 0.36
COL1A1-201ENST00000225964 RSF1Q96T23 1441 aaPredicted RBP17.31■□□□□ 0.36
COL1A1-201ENST00000225964 TRIM44Q96DX7 344 aaPredicted RBP17.3■□□□□ 0.36
COL1A1-201ENST00000225964 MAPK8IP3Q9UPT6 1336 aa17.3■□□□□ 0.36
COL1A1-201ENST00000225964 NEUROD2Q15784 382 aa17.29■□□□□ 0.36
COL1A1-201ENST00000225964 CDCA8Q53HL2 280 aa17.28■□□□□ 0.36
COL1A1-201ENST00000225964 PTMAP06454 111 aaKnown RBP17.27■□□□□ 0.35
COL1A1-201ENST00000225964 OS9Q13438 667 aaPredicted RBP17.27■□□□□ 0.35
COL1A1-201ENST00000225964 ZCCHC6Q5VYS8 1495 aaKnown RBP17.26■□□□□ 0.35
COL1A1-201ENST00000225964 CLIP1P30622 1438 aa17.26■□□□□ 0.35
COL1A1-201ENST00000225964 TNNT2P45379 298 aaPredicted RBP17.25■□□□□ 0.35
COL1A1-201ENST00000225964 GOLGA2Q08379 1002 aa17.25■□□□□ 0.35
COL1A1-201ENST00000225964 ERCC6Q03468 1493 aa17.25■□□□□ 0.35
COL1A1-201ENST00000225964 CFDP1Q9UEE9 299 aaPredicted RBP17.24■□□□□ 0.35
COL1A1-201ENST00000225964 CARD11Q9BXL7 1154 aa17.23■□□□□ 0.35
COL1A1-201ENST00000225964 NAP1L2Q9ULW6 460 aaPredicted RBP17.23■□□□□ 0.35
COL1A1-201ENST00000225964 NUDCQ9Y266 331 aa17.21■□□□□ 0.35
COL1A1-201ENST00000225964 NCBP3Q53F19 620 aaKnown RBP17.2■□□□□ 0.34
COL1A1-201ENST00000225964 MIER1Q8N108 512 aa17.2■□□□□ 0.34
COL1A1-201ENST00000225964 DCAF1Q9Y4B6 1507 aa17.19■□□□□ 0.34
COL1A1-201ENST00000225964 MLECQ14165 292 aa17.19■□□□□ 0.34
COL1A1-201ENST00000225964 FGD1P98174 961 aa17.19■□□□□ 0.34
COL1A1-201ENST00000225964 DNTTIP2Q5QJE6 756 aaKnown RBP17.19■□□□□ 0.34
COL1A1-201ENST00000225964 CLSTN1O94985 981 aa17.18■□□□□ 0.34
COL1A1-201ENST00000225964 U2SURPO15042 1029 aaKnown RBP17.18■□□□□ 0.34
COL1A1-201ENST00000225964 SOX12O15370 315 aa17.17■□□□□ 0.34
COL1A1-201ENST00000225964 FRAT1Q92837 279 aaPredicted RBP17.17■□□□□ 0.34
COL1A1-201ENST00000225964 CC2D1BQ5T0F9 858 aaKnown RBP17.16■□□□□ 0.34
COL1A1-201ENST00000225964 ANP32EQ9BTT0 268 aa17.16■□□□□ 0.34
COL1A1-201ENST00000225964 KCNJ4P48050 445 aa17.15■□□□□ 0.34
COL1A1-201ENST00000225964 AEBP2Q6ZN18 517 aaPredicted RBP17.14■□□□□ 0.33
COL1A1-201ENST00000225964 PLCB2Q00722 1185 aa17.14■□□□□ 0.33
COL1A1-201ENST00000225964 RB1CC1Q8TDY2 1594 aa17.14■□□□□ 0.33
COL1A1-201ENST00000225964 ISY1Q9ULR0 285 aaKnown RBP17.13■□□□□ 0.33
COL1A1-201ENST00000225964 GOLGA3Q08378 1498 aa17.11■□□□□ 0.33
COL1A1-201ENST00000225964 HSP90AB1P08238 724 aaKnown RBP17.09■□□□□ 0.33
COL1A1-201ENST00000225964 PNNQ9H307 717 aaKnown RBP17.09■□□□□ 0.33
COL1A1-201ENST00000225964 GOLGA6L6A8MZA4 724 aa17.09■□□□□ 0.33
COL1A1-201ENST00000225964 EIF4G1Q04637 1599 aaKnown RBP17.08■□□□□ 0.32
COL1A1-201ENST00000225964 RGS3P49796 1198 aa17.08■□□□□ 0.32
COL1A1-201ENST00000225964 KANK1Q14678 1352 aa17.07■□□□□ 0.32
COL1A1-201ENST00000225964 SRPK2P78362 688 aaKnown RBP17.06■□□□□ 0.32
COL1A1-201ENST00000225964 HDGFP51858 240 aaKnown RBP17.05■□□□□ 0.32
COL1A1-201ENST00000225964 CHMP4BQ9H444 224 aaKnown RBP17.05■□□□□ 0.32
COL1A1-201ENST00000225964 SAFB2Q14151 953 aaKnown RBP eCLIP17.05■□□□□ 0.32
COL1A1-201ENST00000225964 SUPT16HQ9Y5B9 1047 aaKnown RBP17.05■□□□□ 0.32
COL1A1-201ENST00000225964 BAZ1BQ9UIG0 1483 aaKnown RBP17.04■□□□□ 0.32
COL1A1-201ENST00000225964 CEP162Q5TB80 1403 aa17.01■□□□□ 0.31
COL1A1-201ENST00000225964 MS4A1P11836 297 aa17■□□□□ 0.31
COL1A1-201ENST00000225964 PAK3O75914 559 aaPredicted RBP16.99■□□□□ 0.31
COL1A1-201ENST00000225964 RTF1Q92541 710 aaKnown RBP16.99■□□□□ 0.31
COL1A1-201ENST00000225964 KIF27Q86VH2 1401 aa16.99■□□□□ 0.31
COL1A1-201ENST00000225964 CCNB3Q8WWL7 1395 aa16.99■□□□□ 0.31
COL1A1-201ENST00000225964 TMF1P82094 1093 aa16.99■□□□□ 0.31
COL1A1-201ENST00000225964 GOLGA6L4A6NEF3 574 aa16.98■□□□□ 0.31
COL1A1-201ENST00000225964 STK26Q9P289 416 aa16.98■□□□□ 0.31
COL1A1-201ENST00000225964 ZNF330Q9Y3S2 320 aaPredicted RBP16.97■□□□□ 0.31
COL1A1-201ENST00000225964 DCAF11Q8TEB1 546 aa16.97■□□□□ 0.31
COL1A1-201ENST00000225964 CCDC180Q9P1Z9 1646 aa16.97■□□□□ 0.31
COL1A1-201ENST00000225964 CSB-PGBD3P0DP91 1061 aa16.96■□□□□ 0.31
COL1A1-201ENST00000225964 CCDC9Q9Y3X0 531 aaKnown RBP16.95■□□□□ 0.3
COL1A1-201ENST00000225964 GNL2Q13823 731 aaKnown RBP16.95■□□□□ 0.3
COL1A1-201ENST00000225964 MORC1Q86VD1 984 aa16.95■□□□□ 0.3
COL1A1-201ENST00000225964 MCCP23508 829 aa16.94■□□□□ 0.3
COL1A1-201ENST00000225964 WRNQ14191 1432 aaPredicted RBP eCLIP16.94■□□□□ 0.3
COL1A1-201ENST00000225964 SIN3AQ96ST3 1273 aa16.94■□□□□ 0.3
COL1A1-201ENST00000225964 NAP1L5Q96NT1 182 aaPredicted RBP16.93■□□□□ 0.3
COL1A1-201ENST00000225964 NRDCO43847 1150 aa16.93■□□□□ 0.3
COL1A1-201ENST00000225964 TMX4Q9H1E5 349 aaPredicted RBP16.92■□□□□ 0.3
COL1A1-201ENST00000225964 GGT6Q6P531 493 aa16.92■□□□□ 0.3
COL1A1-201ENST00000225964 EEA1Q15075 1411 aa16.91■□□□□ 0.3
COL1A1-201ENST00000225964 HSCBQ8IWL3 235 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 157.4 ms