RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 MRS2Q9HD23 443 aa25.29■■□□□ 1.64
SMPD3-201ENST00000219334 CLIP1P30622 1438 aa25.28■■□□□ 1.64
SMPD3-201ENST00000219334 ACIN1Q9UKV3 1341 aaKnown RBP25.27■■□□□ 1.64
SMPD3-201ENST00000219334 MYH16Q9H6N6 1097 aa25.26■■□□□ 1.63
SMPD3-201ENST00000219334 EIF4G2P78344 907 aaKnown RBP eCLIP25.22■■□□□ 1.63
SMPD3-201ENST00000219334 CFDP1Q9UEE9 299 aaPredicted RBP25.21■■□□□ 1.63
SMPD3-201ENST00000219334 RGL3Q3MIN7 710 aa25.21■■□□□ 1.63
SMPD3-201ENST00000219334 CCDC136Q96JN2 1154 aa25.21■■□□□ 1.63
SMPD3-201ENST00000219334 ERCC6Q03468 1493 aa25.16■■□□□ 1.62
SMPD3-201ENST00000219334 CCDC180Q9P1Z9 1646 aa25.12■■□□□ 1.61
SMPD3-201ENST00000219334 CDCA8Q53HL2 280 aa25.12■■□□□ 1.61
SMPD3-201ENST00000219334 CFAP53Q96M91 514 aa25.11■■□□□ 1.61
SMPD3-201ENST00000219334 BAZ1BQ9UIG0 1483 aaKnown RBP25.1■■□□□ 1.61
SMPD3-201ENST00000219334 EEA1Q15075 1411 aa25.07■■□□□ 1.6
SMPD3-201ENST00000219334 ARXQ96QS3 562 aa25.06■■□□□ 1.6
SMPD3-201ENST00000219334 DCAF1Q9Y4B6 1507 aa25.06■■□□□ 1.6
SMPD3-201ENST00000219334 HIRIP3Q9BW71 556 aaPredicted RBP25.06■■□□□ 1.6
SMPD3-201ENST00000219334 KIF27Q86VH2 1401 aa25.04■■□□□ 1.6
SMPD3-201ENST00000219334 TRHP20396 242 aaPredicted RBP25.03■■□□□ 1.6
SMPD3-201ENST00000219334 LMOD2Q6P5Q4 547 aa25.03■■□□□ 1.6
SMPD3-201ENST00000219334 PPM1GO15355 546 aaPredicted RBP25.03■■□□□ 1.6
SMPD3-201ENST00000219334 GOLGA3Q08378 1498 aa25.02■■□□□ 1.6
SMPD3-201ENST00000219334 WRNQ14191 1432 aaPredicted RBP eCLIP25.01■■□□□ 1.59
SMPD3-201ENST00000219334 KNSTRNQ9Y448 316 aa25.01■■□□□ 1.59
SMPD3-201ENST00000219334 POGKQ9P215 609 aa25■■□□□ 1.59
SMPD3-201ENST00000219334 CDK11BP21127 795 aaKnown RBP24.96■■□□□ 1.59
SMPD3-201ENST00000219334 CARD11Q9BXL7 1154 aa24.93■■□□□ 1.58
SMPD3-201ENST00000219334 NACADO15069 1562 aa24.91■■□□□ 1.58
SMPD3-201ENST00000219334 NUDCQ9Y266 331 aa24.88■■□□□ 1.57
SMPD3-201ENST00000219334 CEP162Q5TB80 1403 aa24.87■■□□□ 1.57
SMPD3-201ENST00000219334 MAPK8IP3Q9UPT6 1336 aa24.86■■□□□ 1.57
SMPD3-201ENST00000219334 HDGFP51858 240 aaKnown RBP24.85■■□□□ 1.57
SMPD3-201ENST00000219334 NPHP1O15259 732 aa24.84■■□□□ 1.57
SMPD3-201ENST00000219334 MLECQ14165 292 aa24.82■■□□□ 1.56
SMPD3-201ENST00000219334 IRX6P78412 446 aaPredicted RBP24.8■■□□□ 1.56
SMPD3-201ENST00000219334 CCNB3Q8WWL7 1395 aa24.8■■□□□ 1.56
SMPD3-201ENST00000219334 LAS1LQ9Y4W2 734 aaKnown RBP24.78■■□□□ 1.56
SMPD3-201ENST00000219334 KANK1Q14678 1352 aa24.77■■□□□ 1.56
SMPD3-201ENST00000219334 NEUROD2Q15784 382 aa24.77■■□□□ 1.56
SMPD3-201ENST00000219334 FTSJ3Q8IY81 847 aaKnown RBP24.77■■□□□ 1.56
SMPD3-201ENST00000219334 CEP164Q9UPV0 1460 aa24.76■■□□□ 1.55
SMPD3-201ENST00000219334 NCLP19338 710 aaKnown RBP24.76■■□□□ 1.55
SMPD3-201ENST00000219334 MIER1Q8N108 512 aa24.73■■□□□ 1.55
SMPD3-201ENST00000219334 BECN1Q14457 450 aa24.72■■□□□ 1.55
SMPD3-201ENST00000219334 CASC1Q6TDU7 716 aa24.72■■□□□ 1.55
SMPD3-201ENST00000219334 TNIKQ9UKE5 1360 aa24.69■■□□□ 1.54
SMPD3-201ENST00000219334 TNNT2P45379 298 aaPredicted RBP24.69■■□□□ 1.54
SMPD3-201ENST00000219334 EIF5BO60841 1220 aaKnown RBP24.67■■□□□ 1.54
SMPD3-201ENST00000219334 U2SURPO15042 1029 aaKnown RBP24.66■■□□□ 1.54
SMPD3-201ENST00000219334 PNNQ9H307 717 aaKnown RBP24.66■■□□□ 1.54
SMPD3-201ENST00000219334 NBR1Q14596 966 aa24.65■■□□□ 1.54
SMPD3-201ENST00000219334 EIF4G1Q04637 1599 aaKnown RBP24.64■■□□□ 1.54
SMPD3-201ENST00000219334 GOLGA6L22H0YM25 854 aa24.64■■□□□ 1.53
SMPD3-201ENST00000219334 FHAD1B1AJZ9 1412 aa24.64■■□□□ 1.53
SMPD3-201ENST00000219334 SENP3-EIF4A1A0A087X0R7 540 aa24.63■■□□□ 1.53
SMPD3-201ENST00000219334 CARMIL1Q5VZK9 1371 aa24.63■■□□□ 1.53
SMPD3-201ENST00000219334 ZRSR1Q15695 479 aaKnown RBP24.62■■□□□ 1.53
SMPD3-201ENST00000219334 CHMP4BQ9H444 224 aaKnown RBP24.62■■□□□ 1.53
SMPD3-201ENST00000219334 DDRGK1Q96HY6 314 aa24.61■■□□□ 1.53
SMPD3-201ENST00000219334 GGT6Q6P531 493 aa24.61■■□□□ 1.53
SMPD3-201ENST00000219334 SRPK2P78362 688 aaKnown RBP24.6■■□□□ 1.53
SMPD3-201ENST00000219334 TMF1P82094 1093 aa24.6■■□□□ 1.53
SMPD3-201ENST00000219334 DCAF11Q8TEB1 546 aa24.59■■□□□ 1.53
SMPD3-201ENST00000219334 OS9Q13438 667 aaPredicted RBP24.59■■□□□ 1.53
SMPD3-201ENST00000219334 CUX2O14529 1486 aa24.57■■□□□ 1.52
SMPD3-201ENST00000219334 BAZ1AQ9NRL2 1556 aaPredicted RBP24.57■■□□□ 1.52
SMPD3-201ENST00000219334 SOX12O15370 315 aa24.57■■□□□ 1.52
SMPD3-201ENST00000219334 CC2D1BQ5T0F9 858 aaKnown RBP24.57■■□□□ 1.52
SMPD3-201ENST00000219334 GOLGA2Q08379 1002 aa24.55■■□□□ 1.52
SMPD3-201ENST00000219334 SIN3AQ96ST3 1273 aa24.55■■□□□ 1.52
SMPD3-201ENST00000219334 MS4A1P11836 297 aa24.54■■□□□ 1.52
SMPD3-201ENST00000219334 FRAT1Q92837 279 aaPredicted RBP24.54■■□□□ 1.52
SMPD3-201ENST00000219334 ANP32EQ9BTT0 268 aa24.52■■□□□ 1.52
SMPD3-201ENST00000219334 CARMIL2Q6F5E8 1435 aa24.52■■□□□ 1.52
SMPD3-201ENST00000219334 SAFB2Q14151 953 aaKnown RBP eCLIP24.51■■□□□ 1.51
SMPD3-201ENST00000219334 TULP1O00294 542 aaPredicted RBP24.49■■□□□ 1.51
SMPD3-201ENST00000219334 FGD1P98174 961 aa24.47■■□□□ 1.51
SMPD3-201ENST00000219334 PDS5BQ9NTI5 1447 aa24.45■■□□□ 1.51
SMPD3-201ENST00000219334 MORC1Q86VD1 984 aa24.45■■□□□ 1.5
SMPD3-201ENST00000219334 STK26Q9P289 416 aa24.45■■□□□ 1.5
SMPD3-201ENST00000219334 EFCAB2Q5VUJ9 269 aa24.43■■□□□ 1.5
SMPD3-201ENST00000219334 KCNJ4P48050 445 aa24.43■■□□□ 1.5
SMPD3-201ENST00000219334 HDGFL2Q7Z4V5 671 aaPredicted RBP24.42■■□□□ 1.5
SMPD3-201ENST00000219334 RTF1Q92541 710 aaKnown RBP24.42■■□□□ 1.5
SMPD3-201ENST00000219334 TRIM44Q96DX7 344 aaPredicted RBP24.4■■□□□ 1.5
SMPD3-201ENST00000219334 TAOK2Q9UL54 1235 aa24.4■■□□□ 1.5
SMPD3-201ENST00000219334 SUPT16HQ9Y5B9 1047 aaKnown RBP24.39■■□□□ 1.49
SMPD3-201ENST00000219334 PAK3O75914 559 aaPredicted RBP24.38■■□□□ 1.49
SMPD3-201ENST00000219334 TPRNQ4KMQ1 711 aa24.38■■□□□ 1.49
SMPD3-201ENST00000219334 CSB-PGBD3P0DP91 1061 aa24.37■■□□□ 1.49
SMPD3-201ENST00000219334 RGS3P49796 1198 aa24.36■■□□□ 1.49
SMPD3-201ENST00000219334 PKD2Q13563 968 aa24.35■■□□□ 1.49
SMPD3-201ENST00000219334 NAP1L2Q9ULW6 460 aaPredicted RBP24.34■■□□□ 1.49
SMPD3-201ENST00000219334 PTMAP06454 111 aaKnown RBP24.33■■□□□ 1.49
SMPD3-201ENST00000219334 CECR2Q9BXF3 1484 aa24.33■■□□□ 1.48
SMPD3-201ENST00000219334 TIMELESSQ9UNS1 1208 aa24.3■■□□□ 1.48
SMPD3-201ENST00000219334 SOGA1O94964 1423 aa24.3■■□□□ 1.48
SMPD3-201ENST00000219334 GLIPR1L2Q4G1C9 344 aa24.3■■□□□ 1.48
SMPD3-201ENST00000219334 TDRD9Q8NDG6 1382 aaKnown RBP24.28■■□□□ 1.48
SMPD3-201ENST00000219334 ARHGAP35Q9NRY4 1499 aa24.26■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms