RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 Thoc2B1AZI6 1594 aaKnown RBP23.99■■□□□ 1.43
Shh-201ENSMUST00000002708 Ankrd26Q811D2 1581 aa23.98■■□□□ 1.43
Shh-201ENSMUST00000002708 Erich3F6QRE9 1637 aa23.97■■□□□ 1.43
Shh-201ENSMUST00000002708 Ubl4bQ9CQ84 188 aa23.97■■□□□ 1.43
Shh-201ENSMUST00000002708 Npm1Q61937 292 aaKnown RBP23.94■■□□□ 1.42
Shh-201ENSMUST00000002708 AqrQ8CFQ3 1481 aaKnown RBP23.92■■□□□ 1.42
Shh-201ENSMUST00000002708 BlmO88700 1416 aa23.9■■□□□ 1.42
Shh-201ENSMUST00000002708 Naip1Q9QWK5 1403 aa23.9■■□□□ 1.42
Shh-201ENSMUST00000002708 Pcf11G3X9Z4 1553 aa23.9■■□□□ 1.42
Shh-201ENSMUST00000002708 Kdm5bQ80Y84 1544 aa23.88■■□□□ 1.41
Shh-201ENSMUST00000002708 Aplp2Q06335 707 aa23.88■■□□□ 1.41
Shh-201ENSMUST00000002708 Slx4Q6P1D7 1565 aa23.87■■□□□ 1.41
Shh-201ENSMUST00000002708 LrpprcQ6PB66 1392 aaKnown RBP23.83■■□□□ 1.4
Shh-201ENSMUST00000002708 Efcab5A0JP43 1406 aa23.82■■□□□ 1.4
Shh-201ENSMUST00000002708 Cux1P53564 1515 aa23.81■■□□□ 1.4
Shh-201ENSMUST00000002708 Lmo7E9PYF4 1699 aaKnown RBP23.8■■□□□ 1.4
Shh-201ENSMUST00000002708 Duox2A2AQ99 1517 aa23.8■■□□□ 1.4
Shh-201ENSMUST00000002708 Lmod2Q3UHZ5 550 aa23.79■■□□□ 1.4
Shh-201ENSMUST00000002708 PogzQ8BZH4 1409 aaKnown RBP23.78■■□□□ 1.4
Shh-201ENSMUST00000002708 Carmil1Q6EDY6 1374 aa23.78■■□□□ 1.4
Shh-201ENSMUST00000002708 Mapk8ip2Q9ERE9 830 aa23.76■■□□□ 1.39
Shh-201ENSMUST00000002708 TchhA0A0B4J1F9 1599 aa23.76■■□□□ 1.39
Shh-201ENSMUST00000002708 Fam135aQ6NS59 1506 aa23.74■■□□□ 1.39
Shh-201ENSMUST00000002708 Fam50aQ9WV03 339 aaKnown RBP23.69■■□□□ 1.38
Shh-201ENSMUST00000002708 CenpbP27790 599 aa23.69■■□□□ 1.38
Shh-201ENSMUST00000002708 Samd9lQ69Z37 1561 aa23.68■■□□□ 1.38
Shh-201ENSMUST00000002708 CntlnA2AM05 1397 aa23.67■■□□□ 1.38
Shh-201ENSMUST00000002708 Urb2E9Q7L1 1524 aaKnown RBP23.66■■□□□ 1.38
Shh-201ENSMUST00000002708 SynmQ70IV5 1561 aa23.65■■□□□ 1.38
Shh-201ENSMUST00000002708 Hnrnpul2Q00PI9 745 aaKnown RBP23.64■■□□□ 1.38
Shh-201ENSMUST00000002708 SafbD3YXK2 937 aaKnown RBP23.61■■□□□ 1.37
Shh-201ENSMUST00000002708 Dhx29Q6PGC1 1365 aaKnown RBP23.61■■□□□ 1.37
Shh-201ENSMUST00000002708 3425401B19RikD3Z1D3 1412 aa23.6■■□□□ 1.37
Shh-201ENSMUST00000002708 Fyco1Q8VDC1 1437 aa23.6■■□□□ 1.37
Shh-201ENSMUST00000002708 Rad54l2Q99NG0 1466 aa23.6■■□□□ 1.37
Shh-201ENSMUST00000002708 Peg3Q3URU2 1571 aa23.57■■□□□ 1.36
Shh-201ENSMUST00000002708 Aebp1Q640N1 1128 aa23.56■■□□□ 1.36
Shh-201ENSMUST00000002708 Polr1aO35134 1717 aaKnown RBP23.52■■□□□ 1.36
Shh-201ENSMUST00000002708 Crocc2F6XLV1 1638 aa23.49■■□□□ 1.35
Shh-201ENSMUST00000002708 Gm1043A0A140LJC2 1431 aa23.48■■□□□ 1.35
Shh-201ENSMUST00000002708 Kif21aQ9QXL2 1672 aa23.47■■□□□ 1.35
Shh-201ENSMUST00000002708 Gm7298A0A0N4SVU1 1476 aa23.42■■□□□ 1.34
Shh-201ENSMUST00000002708 Fhad1A6PWD2 1420 aa23.41■■□□□ 1.34
Shh-201ENSMUST00000002708 Rpap1Q80TE0 1409 aa23.4■■□□□ 1.34
Shh-201ENSMUST00000002708 EprsQ8CGC7 1512 aaKnown RBP23.39■■□□□ 1.34
Shh-201ENSMUST00000002708 Mia2Q91ZV0 1396 aa23.39■■□□□ 1.33
Shh-201ENSMUST00000002708 NclP09405 707 aaKnown RBP23.39■■□□□ 1.33
Shh-201ENSMUST00000002708 Pla2r1Q62028 1487 aa23.38■■□□□ 1.33
Shh-201ENSMUST00000002708 Naip2Q9QUK4 1447 aa23.35■■□□□ 1.33
Shh-201ENSMUST00000002708 Vps8Q0P5W1 1427 aa23.34■■□□□ 1.33
Shh-201ENSMUST00000002708 Hspa5P20029 655 aaKnown RBP23.34■■□□□ 1.33
Shh-201ENSMUST00000002708 Fam71e1A1L3C1 212 aa23.33■■□□□ 1.33
Shh-201ENSMUST00000002708 A2mQ6GQT1 1474 aa23.31■■□□□ 1.32
Shh-201ENSMUST00000002708 Mrc2Q64449 1479 aa23.31■■□□□ 1.32
Shh-201ENSMUST00000002708 Abca5Q8K448 1642 aa23.3■■□□□ 1.32
Shh-201ENSMUST00000002708 Magi3Q9EQJ9 1476 aa23.3■■□□□ 1.32
Shh-201ENSMUST00000002708 Ccnb3Q810T2 1396 aa23.3■■□□□ 1.32
Shh-201ENSMUST00000002708 Ccer2J3QPU5 274 aa23.3■■□□□ 1.32
Shh-201ENSMUST00000002708 Gpatch8A2A6A1 1505 aa23.3■■□□□ 1.32
Shh-201ENSMUST00000002708 Ankrd36D3Z4K0 1415 aa23.3■■□□□ 1.32
Shh-201ENSMUST00000002708 CadpsQ80TJ1 1355 aa23.29■■□□□ 1.32
Shh-201ENSMUST00000002708 Chic2Q9D9G3 165 aa23.28■■□□□ 1.32
Shh-201ENSMUST00000002708 Tnnt3Q9QZ47 272 aa23.27■■□□□ 1.32
Shh-201ENSMUST00000002708 Ube2uB1AUC4 352 aa23.26■■□□□ 1.31
Shh-201ENSMUST00000002708 UacaQ8CGB3 1411 aa23.25■■□□□ 1.31
Shh-201ENSMUST00000002708 WizO88286 1684 aaKnown RBP23.25■■□□□ 1.31
Shh-201ENSMUST00000002708 Grin2aP35436 1464 aa23.25■■□□□ 1.31
Shh-201ENSMUST00000002708 Znf710Q3U288 666 aa23.24■■□□□ 1.31
Shh-201ENSMUST00000002708 Kif27Q7M6Z4 1394 aa23.24■■□□□ 1.31
Shh-201ENSMUST00000002708 Plb1Q3TTY0 1478 aa23.22■■□□□ 1.31
Shh-201ENSMUST00000002708 Lmtk2Q3TYD6 1471 aa23.21■■□□□ 1.31
Shh-201ENSMUST00000002708 Setd1bQ8CFT2 1985 aa23.2■■□□□ 1.3
Shh-201ENSMUST00000002708 Myt1Q8CFC2 1127 aa23.18■■□□□ 1.3
Shh-201ENSMUST00000002708 Dennd4bQ3U1Y4 1499 aa23.17■■□□□ 1.3
Shh-201ENSMUST00000002708 Dnajc5bQ9CQ94 199 aa23.17■■□□□ 1.3
Shh-201ENSMUST00000002708 BC005561E9Q5E2 1589 aa23.17■■□□□ 1.3
Shh-201ENSMUST00000002708 NexmifQ5DTT1 1515 aa23.16■■□□□ 1.3
Shh-201ENSMUST00000002708 Adamts12Q811B3 1600 aa23.16■■□□□ 1.3
Shh-201ENSMUST00000002708 Disp1Q3TDN0 1521 aa23.16■■□□□ 1.3
Shh-201ENSMUST00000002708 Gcc2Q8CHG3 1679 aa23.15■■□□□ 1.3
Shh-201ENSMUST00000002708 Sin3aQ60520 1274 aaKnown RBP23.12■■□□□ 1.29
Shh-201ENSMUST00000002708 PxdnQ3UQ28 1475 aa23.1■■□□□ 1.29
Shh-201ENSMUST00000002708 Cul7Q8VE73 1689 aa23.1■■□□□ 1.29
Shh-201ENSMUST00000002708 Slc24a1Q91WD8 1130 aa23.09■■□□□ 1.29
Shh-201ENSMUST00000002708 Soga1E1U8D0 1418 aa23.08■■□□□ 1.29
Shh-201ENSMUST00000002708 Gm13697A2AK42 830 aa23.08■■□□□ 1.29
Shh-201ENSMUST00000002708 Abca16E9PWJ7 1678 aa23.06■■□□□ 1.28
Shh-201ENSMUST00000002708 WrnO09053 1401 aa23.02■■□□□ 1.28
Shh-201ENSMUST00000002708 Naip5Q9R016 1403 aa23.02■■□□□ 1.28
Shh-201ENSMUST00000002708 Ncoa2Q61026 1462 aa23.01■■□□□ 1.27
Shh-201ENSMUST00000002708 Fhod3Q76LL6 1578 aa23.01■■□□□ 1.27
Shh-201ENSMUST00000002708 Cabp1Q9JLK7 227 aa22.99■■□□□ 1.27
Shh-201ENSMUST00000002708 Mphosph9A6H5Y1 991 aa22.98■■□□□ 1.27
Shh-201ENSMUST00000002708 Stra8P70278 393 aa22.97■■□□□ 1.27
Shh-201ENSMUST00000002708 Camsap2Q8C1B1 1461 aa22.97■■□□□ 1.27
Shh-201ENSMUST00000002708 Mug1P28665 1476 aa22.96■■□□□ 1.27
Shh-201ENSMUST00000002708 Ncoa3O09000 1398 aa22.96■■□□□ 1.27
Shh-201ENSMUST00000002708 Arhgap27A2AB59 869 aa22.95■■□□□ 1.26
Shh-201ENSMUST00000002708 Rapgef6Q5NCJ1 1609 aa22.93■■□□□ 1.26
Shh-201ENSMUST00000002708 Ift140E9PY46 1464 aa22.92■■□□□ 1.26
Retrieved 100 of 22,080 RNA–protein pairs in 31.6 ms