RNA–Protein interactions for RNA: ENST00000539661.5

RAB40C-205, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 3 BASIC

Gene RAB40C, Length 2,609 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-205ENST00000539661 PRSS2P07478 247 aa12.98□□□□□ -0.33
RAB40C-205ENST00000539661 PF4V1P10720 104 aa12.98□□□□□ -0.33
RAB40C-205ENST00000539661 YAE1D1Q9NRH1 226 aa12.98□□□□□ -0.33
RAB40C-205ENST00000539661 NBPF19A0A087WUL8 3843 aa12.98□□□□□ -0.33
RAB40C-205ENST00000539661 LST1O00453 97 aa12.98□□□□□ -0.33
RAB40C-205ENST00000539661 CD28P10747 220 aa12.97□□□□□ -0.33
RAB40C-205ENST00000539661 BPESC1Q9GZL8 116 aa12.97□□□□□ -0.33
RAB40C-205ENST00000539661 NDUFA12Q9UI09 145 aa12.97□□□□□ -0.33
RAB40C-205ENST00000539661 EPG5Q9HCE0 2579 aa12.97□□□□□ -0.33
RAB40C-205ENST00000539661 USP9YO00507 2555 aaPredicted RBP12.97□□□□□ -0.33
RAB40C-205ENST00000539661 LRRK2Q5S007 2527 aa12.96□□□□□ -0.33
RAB40C-205ENST00000539661 FAM110AQ9BQ89 295 aa12.96□□□□□ -0.33
RAB40C-205ENST00000539661 TIMM17BO60830 172 aa12.96□□□□□ -0.33
RAB40C-205ENST00000539661 IGLV1-40P01703 118 aa12.96□□□□□ -0.33
RAB40C-205ENST00000539661 ADAMTSL4-AS1Q5T5F5 129 aa12.96□□□□□ -0.33
RAB40C-205ENST00000539661 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.95□□□□□ -0.344e-6■■■■□ 21.3
RAB40C-205ENST00000539661 TINCRA0A1B0GVN0 87 aa12.95□□□□□ -0.34
RAB40C-205ENST00000539661 ADARB2-AS1A8MUL3 147 aa12.95□□□□□ -0.34
RAB40C-205ENST00000539661 C19orf84I3L1E1 186 aa12.95□□□□□ -0.34
RAB40C-205ENST00000539661 TMEM61Q8N0U2 210 aa12.95□□□□□ -0.34
RAB40C-205ENST00000539661 FAM104AQ969W3 186 aa12.95□□□□□ -0.34
RAB40C-205ENST00000539661 VSIG2Q96IQ7 327 aa12.95□□□□□ -0.34
RAB40C-205ENST00000539661 TRBV7-7A0A0K0K1E9 115 aa12.94□□□□□ -0.34
RAB40C-205ENST00000539661 USP24Q9UPU5 2620 aa12.94□□□□□ -0.34
RAB40C-205ENST00000539661 FBN2P35556 2912 aa12.94□□□□□ -0.34
RAB40C-205ENST00000539661 ZNF462Q96JM2 2506 aa12.94□□□□□ -0.34
RAB40C-205ENST00000539661 TRGV11A0A075B6L2 103 aa12.93□□□□□ -0.34
RAB40C-205ENST00000539661 TRAV8-3A0A0A6YYJ7 113 aa12.93□□□□□ -0.34
RAB40C-205ENST00000539661 ZNF469Q96JG9 3925 aaPredicted RBP12.93□□□□□ -0.34
RAB40C-205ENST00000539661 SNRPD3P62318 126 aaKnown RBP12.93□□□□□ -0.34
RAB40C-205ENST00000539661 RNF152Q8N8N0 203 aa12.93□□□□□ -0.34
RAB40C-205ENST00000539661 TRAV12-2A0A075B6T6 113 aa12.92□□□□□ -0.34
RAB40C-205ENST00000539661 CSPG4Q6UVK1 2322 aa12.92□□□□□ -0.34
RAB40C-205ENST00000539661 IGHV3OR16-10A0A075B7F0 116 aa12.92□□□□□ -0.34
RAB40C-205ENST00000539661 A6NDX4 124 aa12.92□□□□□ -0.34
RAB40C-205ENST00000539661 ACYP1P07311 99 aa12.92□□□□□ -0.34
RAB40C-205ENST00000539661 CLEC2BQ92478 149 aa12.92□□□□□ -0.34
RAB40C-205ENST00000539661 ABCA12Q86UK0 2595 aa12.91□□□□□ -0.34
RAB40C-205ENST00000539661 UBTD1Q9HAC8 227 aa12.91□□□□□ -0.34
RAB40C-205ENST00000539661 PRRC2AP48634 2157 aaKnown RBP12.91□□□□□ -0.34
RAB40C-205ENST00000539661 EDN2P20800 178 aa12.91□□□□□ -0.34
RAB40C-205ENST00000539661 GNLYP22749 145 aa12.91□□□□□ -0.34
RAB40C-205ENST00000539661 BRD3OSQ6XYD6 125 aa12.91□□□□□ -0.34
RAB40C-205ENST00000539661 CFHR3Q02985 330 aa12.9□□□□□ -0.34
RAB40C-205ENST00000539661 IMUPQ9GZP8 106 aa12.9□□□□□ -0.34
RAB40C-205ENST00000539661 ABCA2Q9BZC7 2435 aa12.9□□□□□ -0.34
RAB40C-205ENST00000539661 LY6EQ16553 131 aa12.9□□□□□ -0.35
RAB40C-205ENST00000539661 MEIG1Q5JSS6 88 aa12.9□□□□□ -0.35
RAB40C-205ENST00000539661 DUX3Q96PT4 197 aa12.9□□□□□ -0.35
RAB40C-205ENST00000539661 K7EQG2 157 aa12.89□□□□□ -0.35
RAB40C-205ENST00000539661 SPINK13Q1W4C9 94 aa12.89□□□□□ -0.35
RAB40C-205ENST00000539661 TMEM101Q96IK0 257 aa12.89□□□□□ -0.35
RAB40C-205ENST00000539661 IGKV3-20P01619 116 aa12.88□□□□□ -0.35
RAB40C-205ENST00000539661 H3BUX3 64 aa12.88□□□□□ -0.35
RAB40C-205ENST00000539661 TNFRSF18Q9Y5U5 241 aa12.88□□□□□ -0.35
RAB40C-205ENST00000539661 SMIM20Q8N5G0 67 aa12.87□□□□□ -0.35
RAB40C-205ENST00000539661 TMEM126AQ9H061 195 aa12.87□□□□□ -0.35
RAB40C-205ENST00000539661 BLCAPP62952 87 aa12.87□□□□□ -0.35
RAB40C-205ENST00000539661 Q6ZSV7 163 aa12.87□□□□□ -0.35
RAB40C-205ENST00000539661 UBE2D4Q9Y2X8 147 aa12.87□□□□□ -0.35
RAB40C-205ENST00000539661 NDUFA1O15239 70 aa12.86□□□□□ -0.35
RAB40C-205ENST00000539661 CEMP1Q6PRD7 247 aaPredicted RBP12.86□□□□□ -0.35
RAB40C-205ENST00000539661 NPC2P61916 151 aa12.85□□□□□ -0.35
RAB40C-205ENST00000539661 CHCHD7Q9BUK0 85 aa12.85□□□□□ -0.35
RAB40C-205ENST00000539661 CIRBPQ14011 172 aaKnown RBP12.85□□□□□ -0.35
RAB40C-205ENST00000539661 PIK3CD-AS1Q5SR53 167 aa12.85□□□□□ -0.35
RAB40C-205ENST00000539661 DOPEY1Q5JWR5 2465 aa12.85□□□□□ -0.35
RAB40C-205ENST00000539661 PTPN13Q12923 2485 aa12.84□□□□□ -0.35
RAB40C-205ENST00000539661 TIRAPP58753 221 aa12.84□□□□□ -0.35
RAB40C-205ENST00000539661 HERV-K104P63124 156 aa12.84□□□□□ -0.35
RAB40C-205ENST00000539661 CHCHD5Q9BSY4 110 aa12.84□□□□□ -0.35
RAB40C-205ENST00000539661 IGLV5-45A0A087WSX0 123 aa12.83□□□□□ -0.36
RAB40C-205ENST00000539661 A8MZ25 164 aa12.83□□□□□ -0.36
RAB40C-205ENST00000539661 RNASE13Q5GAN3 156 aaKnown RBP12.83□□□□□ -0.36
RAB40C-205ENST00000539661 COPS9Q8WXC6 57 aa12.83□□□□□ -0.36
RAB40C-205ENST00000539661 CITED2Q99967 270 aaPredicted RBP12.83□□□□□ -0.36
RAB40C-205ENST00000539661 COX7A2LO14548 114 aa12.82□□□□□ -0.36
RAB40C-205ENST00000539661 IGHV4-38-2P0DP08 117 aa12.82□□□□□ -0.36
RAB40C-205ENST00000539661 PSMB8P28062 276 aa12.82□□□□□ -0.36
RAB40C-205ENST00000539661 TLN2Q9Y4G6 2542 aa12.82□□□□□ -0.36
RAB40C-205ENST00000539661 TMEM95Q3KNT9 176 aa12.81□□□□□ -0.36
RAB40C-205ENST00000539661 TMEM89A2RUT3 159 aa12.8□□□□□ -0.36
RAB40C-205ENST00000539661 DNAJC30Q96LL9 226 aa12.8□□□□□ -0.36
RAB40C-205ENST00000539661 LINC01587Q99440 93 aa12.8□□□□□ -0.36
RAB40C-205ENST00000539661 PRORYQ9H606 182 aa12.8□□□□□ -0.36
RAB40C-205ENST00000539661 MXRA5Q9NR99 2828 aa12.8□□□□□ -0.36
RAB40C-205ENST00000539661 IGHV3-73A0A0B4J1V6 119 aa12.8□□□□□ -0.36
RAB40C-205ENST00000539661 PRB1P04280 392 aa12.8□□□□□ -0.36
RAB40C-205ENST00000539661 PROK1P58294 105 aa12.8□□□□□ -0.36
RAB40C-205ENST00000539661 SHISA2Q6UWI4 295 aa12.8□□□□□ -0.36
RAB40C-205ENST00000539661 LINC00643Q86TS7 51 aa12.8□□□□□ -0.36
RAB40C-205ENST00000539661 LINC00308Q8TCZ7 52 aa12.8□□□□□ -0.36
RAB40C-205ENST00000539661 NRGNQ92686 78 aa12.8□□□□□ -0.36
RAB40C-205ENST00000539661 CDKN2A-AS1Q9UH64 79 aa12.79□□□□□ -0.36
RAB40C-205ENST00000539661 DOPEY2Q9Y3R5 2298 aa12.79□□□□□ -0.36
RAB40C-205ENST00000539661 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.78□□□□□ -0.36
RAB40C-205ENST00000539661 FAM236AA0A1B0GUQ0 79 aa12.78□□□□□ -0.36
RAB40C-205ENST00000539661 FAM236BA0A1B0GV22 79 aa12.78□□□□□ -0.36
RAB40C-205ENST00000539661 IGKV2-29A2NJV5 120 aaPredicted RBP12.78□□□□□ -0.36
RAB40C-205ENST00000539661 ATP5G1P05496 136 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms