RNA–Protein interactions for RNA: ENST00000399256.4

APOB-202, Transcript of apolipoprotein B, humanhuman

TSL 1 (best) BASIC

Gene APOB, Length 3,128 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOB-202ENST00000399256 H3BUA1 57 aa10.29□□□□□ -0.76
APOB-202ENST00000399256 FAM104AQ969W3 186 aa10.29□□□□□ -0.76
APOB-202ENST00000399256 ZNF462Q96JM2 2506 aa10.28□□□□□ -0.76
APOB-202ENST00000399256 PRRC2AP48634 2157 aaKnown RBP10.28□□□□□ -0.76
APOB-202ENST00000399256 HTN1P15515 57 aa10.28□□□□□ -0.76
APOB-202ENST00000399256 PROK1P58294 105 aa10.28□□□□□ -0.76
APOB-202ENST00000399256 DUX3Q96PT4 197 aa10.28□□□□□ -0.76
APOB-202ENST00000399256 VPS13CQ709C8 3753 aa10.28□□□□□ -0.76
APOB-202ENST00000399256 TMEM95Q3KNT9 176 aa10.28□□□□□ -0.76
APOB-202ENST00000399256 FLNCQ14315 2725 aa10.27□□□□□ -0.76
APOB-202ENST00000399256 Q6Q795 121 aa10.27□□□□□ -0.76
APOB-202ENST00000399256 IGHV1-58A0A0C4DH39 117 aa10.27□□□□□ -0.77
APOB-202ENST00000399256 MRPS36P82909 103 aaKnown RBP10.27□□□□□ -0.77
APOB-202ENST00000399256 DAND5Q8N907 189 aa10.27□□□□□ -0.77
APOB-202ENST00000399256 LINC01600Q96MT4 127 aa10.27□□□□□ -0.77
APOB-202ENST00000399256 COX6CP09669 75 aa10.26□□□□□ -0.77
APOB-202ENST00000399256 MIAQ16674 131 aa10.26□□□□□ -0.77
APOB-202ENST00000399256 BRI3O95415 125 aa10.26□□□□□ -0.77
APOB-202ENST00000399256 IGLV1-40P01703 118 aa10.26□□□□□ -0.77
APOB-202ENST00000399256 SPANXDQ9BXN6 97 aa10.26□□□□□ -0.77
APOB-202ENST00000399256 SPANXCQ9NY87 97 aa10.26□□□□□ -0.77
APOB-202ENST00000399256 DOPEY1Q5JWR5 2465 aa10.25□□□□□ -0.77
APOB-202ENST00000399256 USP9XQ93008 2570 aaPredicted RBP10.25□□□□□ -0.77
APOB-202ENST00000399256 COL12A1Q99715 3063 aa10.25□□□□□ -0.77
APOB-202ENST00000399256 A6NDX4 124 aa10.25□□□□□ -0.77
APOB-202ENST00000399256 K7EMT4 169 aa10.25□□□□□ -0.77
APOB-202ENST00000399256 SNRPD3P62318 126 aaKnown RBP10.25□□□□□ -0.77
APOB-202ENST00000399256 Q9UF83 564 aa10.25□□□□□ -0.77
APOB-202ENST00000399256 KMT2BQ9UMN6 2715 aaPredicted RBP10.25□□□□□ -0.77
APOB-202ENST00000399256 KNCNA6PVL3 124 aa10.24□□□□□ -0.77
APOB-202ENST00000399256 H3BT86 120 aa10.24□□□□□ -0.77
APOB-202ENST00000399256 VSIG2Q96IQ7 327 aa10.24□□□□□ -0.77
APOB-202ENST00000399256 MYO18BQ8IUG5 2567 aa10.24□□□□□ -0.77
APOB-202ENST00000399256 C10orf99Q6UWK7 81 aa10.24□□□□□ -0.77
APOB-202ENST00000399256 PYGO1Q9Y3Y4 419 aa10.24□□□□□ -0.77
APOB-202ENST00000399256 SORL1Q92673 2214 aa10.24□□□□□ -0.77
APOB-202ENST00000399256 LST1O00453 97 aa10.23□□□□□ -0.77
APOB-202ENST00000399256 PRM2P04554 102 aa10.23□□□□□ -0.77
APOB-202ENST00000399256 TMEM61Q8N0U2 210 aa10.23□□□□□ -0.77
APOB-202ENST00000399256 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.23□□□□□ -0.77
APOB-202ENST00000399256 IGKV2-29A2NJV5 120 aaPredicted RBP10.23□□□□□ -0.77
APOB-202ENST00000399256 UBR5O95071 2799 aaPredicted RBP10.23□□□□□ -0.77
APOB-202ENST00000399256 IGHV4-61A0A0C4DH41 118 aa10.22□□□□□ -0.77
APOB-202ENST00000399256 TNFRSF18Q9Y5U5 241 aa10.22□□□□□ -0.77
APOB-202ENST00000399256 RBMY1A1P0DJD3 496 aaKnown RBP10.22□□□□□ -0.77
APOB-202ENST00000399256 RBMY1CP0DJD4 496 aa10.22□□□□□ -0.77
APOB-202ENST00000399256 RBMY1FQ15415 496 aaKnown RBP10.22□□□□□ -0.77
APOB-202ENST00000399256 K7EQG2 157 aa10.22□□□□□ -0.77
APOB-202ENST00000399256 SMIM20Q8N5G0 67 aa10.22□□□□□ -0.77
APOB-202ENST00000399256 CHCHD5Q9BSY4 110 aa10.22□□□□□ -0.77
APOB-202ENST00000399256 TRGV11A0A075B6L2 103 aa10.21□□□□□ -0.77
APOB-202ENST00000399256 DUX5Q96PT3 197 aa10.21□□□□□ -0.77
APOB-202ENST00000399256 DOPEY2Q9Y3R5 2298 aa10.21□□□□□ -0.77
APOB-202ENST00000399256 TINCRA0A1B0GVN0 87 aa10.21□□□□□ -0.78
APOB-202ENST00000399256 CFHR3Q02985 330 aa10.21□□□□□ -0.78
APOB-202ENST00000399256 MEIG1Q5JSS6 88 aa10.2□□□□□ -0.78
APOB-202ENST00000399256 C3orf56Q8N813 242 aa10.2□□□□□ -0.78
APOB-202ENST00000399256 IGHV3-38A0A0C4DH36 116 aa10.2□□□□□ -0.78
APOB-202ENST00000399256 MAP1AP78559 2803 aaPredicted RBP10.2□□□□□ -0.78
APOB-202ENST00000399256 Q6ZSN1 163 aa10.2□□□□□ -0.78
APOB-202ENST00000399256 YAE1D1Q9NRH1 226 aa10.2□□□□□ -0.78
APOB-202ENST00000399256 UBE2D4Q9Y2X8 147 aa10.2□□□□□ -0.78
APOB-202ENST00000399256 A0A0U1RRA0 63 aa10.19□□□□□ -0.78
APOB-202ENST00000399256 CHCHD7Q9BUK0 85 aa10.19□□□□□ -0.78
APOB-202ENST00000399256 SYNJ2BPP57105 145 aa10.19□□□□□ -0.78
APOB-202ENST00000399256 LINC00467Q9BRT7 94 aa10.19□□□□□ -0.78
APOB-202ENST00000399256 CHD6Q8TD26 2715 aa10.18□□□□□ -0.78
APOB-202ENST00000399256 CDKN2A-AS1Q9UH64 79 aa10.18□□□□□ -0.78
APOB-202ENST00000399256 MRPL23Q16540 153 aaKnown RBP10.18□□□□□ -0.78
APOB-202ENST00000399256 ZNF625Q96I27 306 aaPredicted RBP10.18□□□□□ -0.78
APOB-202ENST00000399256 CITED2Q99967 270 aaPredicted RBP10.18□□□□□ -0.78
APOB-202ENST00000399256 FAM240AA0A1B0GVK7 77 aa10.17□□□□□ -0.78
APOB-202ENST00000399256 PSMB8P28062 276 aa10.17□□□□□ -0.78
APOB-202ENST00000399256 HERV-K104P63124 156 aa10.17□□□□□ -0.78
APOB-202ENST00000399256 DEFB121Q5J5C9 76 aa10.17□□□□□ -0.78
APOB-202ENST00000399256 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.17□□□□□ -0.781e-20■■■■□ 23.1
APOB-202ENST00000399256 SPANXA1Q9NS26 97 aa10.17□□□□□ -0.78
APOB-202ENST00000399256 FAM208BQ5VWN6 2430 aa10.16□□□□□ -0.78
APOB-202ENST00000399256 CRYBG3Q68DQ2 2970 aa10.16□□□□□ -0.78
APOB-202ENST00000399256 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.16□□□□□ -0.78
APOB-202ENST00000399256 TMEM101Q96IK0 257 aa10.16□□□□□ -0.78
APOB-202ENST00000399256 PIMREGQ9BSJ6 248 aa10.16□□□□□ -0.78
APOB-202ENST00000399256 UTP20O75691 2785 aaKnown RBP10.15□□□□□ -0.78
APOB-202ENST00000399256 EDA2RQ9HAV5 297 aa10.15□□□□□ -0.79
APOB-202ENST00000399256 SHISA2Q6UWI4 295 aa10.14□□□□□ -0.79
APOB-202ENST00000399256 FAM110AQ9BQ89 295 aa10.14□□□□□ -0.79
APOB-202ENST00000399256 LRRK2Q5S007 2527 aa10.14□□□□□ -0.79
APOB-202ENST00000399256 TRBV7-7A0A0K0K1E9 115 aa10.14□□□□□ -0.79
APOB-202ENST00000399256 NDUFA1O15239 70 aa10.14□□□□□ -0.79
APOB-202ENST00000399256 TIMM17BO60830 172 aa10.14□□□□□ -0.79
APOB-202ENST00000399256 COX6A2Q02221 97 aa10.14□□□□□ -0.79
APOB-202ENST00000399256 FAM236AA0A1B0GUQ0 79 aa10.13□□□□□ -0.79
APOB-202ENST00000399256 FAM236BA0A1B0GV22 79 aa10.13□□□□□ -0.79
APOB-202ENST00000399256 LINC00308Q8TCZ7 52 aa10.13□□□□□ -0.79
APOB-202ENST00000399256 Q9H8V8 135 aa10.13□□□□□ -0.79
APOB-202ENST00000399256 NACAE9PAV3 2078 aa10.13□□□□□ -0.79
APOB-202ENST00000399256 AVPP01185 164 aa10.13□□□□□ -0.79
APOB-202ENST00000399256 CIRBPQ14011 172 aaKnown RBP10.13□□□□□ -0.79
APOB-202ENST00000399256 IGHV4-59P01825 116 aa10.12□□□□□ -0.79
APOB-202ENST00000399256 Q8N2B8 174 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms