RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 IGHV3-73A0A0B4J1V6 119 aa15.48■□□□□ 0.07
UPF3A-202ENST00000375299 TTC32Q5I0X7 151 aa15.48■□□□□ 0.07
UPF3A-202ENST00000375299 RNF152Q8N8N0 203 aa15.48■□□□□ 0.07
UPF3A-202ENST00000375299 VSIG2Q96IQ7 327 aa15.48■□□□□ 0.07
UPF3A-202ENST00000375299 CCL19Q99731 98 aa15.48■□□□□ 0.07
UPF3A-202ENST00000375299 TINCRA0A1B0GVN0 87 aa15.47■□□□□ 0.07
UPF3A-202ENST00000375299 B5MCH6 92 aa15.47■□□□□ 0.07
UPF3A-202ENST00000375299 IFITM1P13164 125 aa15.47■□□□□ 0.07
UPF3A-202ENST00000375299 PROK1P58294 105 aa15.47■□□□□ 0.07
UPF3A-202ENST00000375299 SPTAN1Q13813 2472 aaKnown RBP15.46■□□□□ 0.07
UPF3A-202ENST00000375299 NPC2P61916 151 aa15.46■□□□□ 0.06
UPF3A-202ENST00000375299 TNFRSF18Q9Y5U5 241 aa15.46■□□□□ 0.06
UPF3A-202ENST00000375299 RBMY1A1P0DJD3 496 aaKnown RBP15.45■□□□□ 0.06
UPF3A-202ENST00000375299 RBMY1CP0DJD4 496 aa15.45■□□□□ 0.06
UPF3A-202ENST00000375299 RBMY1FQ15415 496 aaKnown RBP15.45■□□□□ 0.06
UPF3A-202ENST00000375299 Q6ZSV7 163 aa15.45■□□□□ 0.06
UPF3A-202ENST00000375299 COL12A1Q99715 3063 aa15.45■□□□□ 0.06
UPF3A-202ENST00000375299 A8MZ25 164 aa15.44■□□□□ 0.06
UPF3A-202ENST00000375299 YAE1D1Q9NRH1 226 aa15.44■□□□□ 0.06
UPF3A-202ENST00000375299 IGHV4-30-2A0A087WSY4 118 aa15.44■□□□□ 0.06
UPF3A-202ENST00000375299 C10orf99Q6UWK7 81 aa15.44■□□□□ 0.06
UPF3A-202ENST00000375299 TMEM61Q8N0U2 210 aa15.44■□□□□ 0.06
UPF3A-202ENST00000375299 CLEC2BQ92478 149 aa15.44■□□□□ 0.06
UPF3A-202ENST00000375299 LST1O00453 97 aa15.43■□□□□ 0.06
UPF3A-202ENST00000375299 CHCHD7Q9BUK0 85 aa15.43■□□□□ 0.06
UPF3A-202ENST00000375299 SPANXA1Q9NS26 97 aa15.43■□□□□ 0.06
UPF3A-202ENST00000375299 UBE2D4Q9Y2X8 147 aa15.43■□□□□ 0.06
UPF3A-202ENST00000375299 DOPEY2Q9Y3R5 2298 aa15.42■□□□□ 0.06
UPF3A-202ENST00000375299 GAGE12JA6NER3 117 aa15.42■□□□□ 0.06
UPF3A-202ENST00000375299 GAGE7O76087 117 aa15.42■□□□□ 0.06
UPF3A-202ENST00000375299 GAGE12FP0CL80 117 aa15.42■□□□□ 0.06
UPF3A-202ENST00000375299 GAGE12GP0CL81 117 aa15.42■□□□□ 0.06
UPF3A-202ENST00000375299 GAGE12IP0CL82 117 aa15.42■□□□□ 0.06
UPF3A-202ENST00000375299 ATP5J2P56134 94 aa15.42■□□□□ 0.06
UPF3A-202ENST00000375299 GAGE4Q13068 117 aa15.42■□□□□ 0.06
UPF3A-202ENST00000375299 MRPL23Q16540 153 aaKnown RBP15.42■□□□□ 0.06
UPF3A-202ENST00000375299 TIMM17BO60830 172 aa15.41■□□□□ 0.06
UPF3A-202ENST00000375299 MSMBP08118 114 aa15.41■□□□□ 0.06
UPF3A-202ENST00000375299 SYNJ2BPP57105 145 aa15.41■□□□□ 0.06
UPF3A-202ENST00000375299 CCDC179H3BU77 68 aa15.41■□□□□ 0.06
UPF3A-202ENST00000375299 HTN1P15515 57 aa15.41■□□□□ 0.06
UPF3A-202ENST00000375299 CELSR2Q9HCU4 2923 aa15.4■□□□□ 0.06
UPF3A-202ENST00000375299 DEFB121Q5J5C9 76 aa15.4■□□□□ 0.06
UPF3A-202ENST00000375299 MAP1AP78559 2803 aaPredicted RBP15.4■□□□□ 0.06
UPF3A-202ENST00000375299 NACAE9PAV3 2078 aa15.39■□□□□ 0.06
UPF3A-202ENST00000375299 IGKV2D-29A0A075B6S2 120 aaPredicted RBP15.39■□□□□ 0.05
UPF3A-202ENST00000375299 FAM240AA0A1B0GVK7 77 aa15.39■□□□□ 0.05
UPF3A-202ENST00000375299 IGKV2-29A2NJV5 120 aaPredicted RBP15.39■□□□□ 0.05
UPF3A-202ENST00000375299 TMEM89A2RUT3 159 aa15.39■□□□□ 0.05
UPF3A-202ENST00000375299 KNCNA6PVL3 124 aa15.39■□□□□ 0.05
UPF3A-202ENST00000375299 Q9UF83 564 aa15.39■□□□□ 0.05
UPF3A-202ENST00000375299 AVPP01185 164 aa15.38■□□□□ 0.05
UPF3A-202ENST00000375299 DUX5Q96PT3 197 aa15.37■□□□□ 0.05
UPF3A-202ENST00000375299 LINC00467Q9BRT7 94 aa15.37■□□□□ 0.05
UPF3A-202ENST00000375299 Q6ZSN1 163 aa15.36■□□□□ 0.05
UPF3A-202ENST00000375299 DUX3Q96PT4 197 aa15.36■□□□□ 0.05
UPF3A-202ENST00000375299 CFAP46Q8IYW2 2715 aa15.35■□□□□ 0.05
UPF3A-202ENST00000375299 NDUFA1O15239 70 aa15.35■□□□□ 0.05
UPF3A-202ENST00000375299 IGHV4-59P01825 116 aa15.35■□□□□ 0.05
UPF3A-202ENST00000375299 DAND5Q8N907 189 aa15.35■□□□□ 0.05
UPF3A-202ENST00000375299 CDKN2A-AS1Q9UH64 79 aa15.35■□□□□ 0.05
UPF3A-202ENST00000375299 PKD1L2Q7Z442 2459 aa15.34■□□□□ 0.05
UPF3A-202ENST00000375299 PIK3CD-AS1Q5SR53 167 aa15.34■□□□□ 0.05
UPF3A-202ENST00000375299 ZNF415Q09FC8 603 aa15.34■□□□□ 0.05
UPF3A-202ENST00000375299 PIEZO1Q92508 2521 aa15.33■□□□□ 0.05
UPF3A-202ENST00000375299 PRM2P04554 102 aa15.33■□□□□ 0.04
UPF3A-202ENST00000375299 TIRAPP58753 221 aa15.33■□□□□ 0.04
UPF3A-202ENST00000375299 IGLV5-45A0A087WSX0 123 aa15.33■□□□□ 0.04
UPF3A-202ENST00000375299 B4DSR2 109 aa15.33■□□□□ 0.04
UPF3A-202ENST00000375299 HOXD3P31249 432 aaPredicted RBP15.33■□□□□ 0.04
UPF3A-202ENST00000375299 TMEM101Q96IK0 257 aa15.33■□□□□ 0.04
UPF3A-202ENST00000375299 SORL1Q92673 2214 aa15.33■□□□□ 0.04
UPF3A-202ENST00000375299 IGHV3-38A0A0C4DH36 116 aa15.32■□□□□ 0.04
UPF3A-202ENST00000375299 CITED2Q99967 270 aaPredicted RBP15.32■□□□□ 0.04
UPF3A-202ENST00000375299 SPG11Q96JI7 2443 aa15.32■□□□□ 0.04
UPF3A-202ENST00000375299 A8MTW9 85 aa15.32■□□□□ 0.04
UPF3A-202ENST00000375299 DEFB131AP59861 70 aa15.32■□□□□ 0.04
UPF3A-202ENST00000375299 DEFB112Q30KQ8 113 aa15.32■□□□□ 0.04
UPF3A-202ENST00000375299 DNAJC30Q96LL9 226 aa15.32■□□□□ 0.04
UPF3A-202ENST00000375299 RBMY1BA6NDE4 496 aaKnown RBP15.31■□□□□ 0.04
UPF3A-202ENST00000375299 RBMY1EA6NEQ0 496 aaKnown RBP15.31■□□□□ 0.04
UPF3A-202ENST00000375299 RBMY1DP0C7P1 496 aaKnown RBP15.31■□□□□ 0.04
UPF3A-202ENST00000375299 CIRBPQ14011 172 aaKnown RBP15.31■□□□□ 0.04
UPF3A-202ENST00000375299 IGHV3-53P01767 116 aa15.29■□□□□ 0.04
UPF3A-202ENST00000375299 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.29■□□□□ 0.04
UPF3A-202ENST00000375299 LINC00308Q8TCZ7 52 aa15.29■□□□□ 0.04
UPF3A-202ENST00000375299 CRYBG3Q68DQ2 2970 aa15.29■□□□□ 0.04
UPF3A-202ENST00000375299 FLNCQ14315 2725 aa15.29■□□□□ 0.04
UPF3A-202ENST00000375299 TRBV7-7A0A0K0K1E9 115 aa15.29■□□□□ 0.04
UPF3A-202ENST00000375299 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.27■□□□□ 0.042e-8■■■■□ 23.5
UPF3A-202ENST00000375299 COX6A2Q02221 97 aa15.27■□□□□ 0.03
UPF3A-202ENST00000375299 Q9H8V8 135 aa15.27■□□□□ 0.03
UPF3A-202ENST00000375299 COX7A2LO14548 114 aa15.26■□□□□ 0.03
UPF3A-202ENST00000375299 DGAT2L7PQ6IED9 249 aa15.26■□□□□ 0.03
UPF3A-202ENST00000375299 NRGNQ92686 78 aa15.26■□□□□ 0.03
UPF3A-202ENST00000375299 DOPEY1Q5JWR5 2465 aa15.26■□□□□ 0.03
UPF3A-202ENST00000375299 IGLV5-39A0A0G2JS06 123 aa15.26■□□□□ 0.03
UPF3A-202ENST00000375299 UBE2E2Q96LR5 201 aa15.26■□□□□ 0.03
UPF3A-202ENST00000375299 C11orf72Q8NBR9 251 aa15.25■□□□□ 0.03
UPF3A-202ENST00000375299 IGHV3OR16-12A0A075B7B8 117 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms