RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 CDSNQ15517 529 aa13.15□□□□□ -0.3
NUP54-205ENST00000507257 DEFB121Q5J5C9 76 aa13.15□□□□□ -0.3
NUP54-205ENST00000507257 DCHS2Q6V1P9 2916 aa13.15□□□□□ -0.3
NUP54-205ENST00000507257 CSMD1Q96PZ7 3565 aa13.15□□□□□ -0.3
NUP54-205ENST00000507257 B5MCH6 92 aa13.15□□□□□ -0.3
NUP54-205ENST00000507257 CRLF1O75462 422 aa13.15□□□□□ -0.3
NUP54-205ENST00000507257 ZNF56Q15929 161 aa13.15□□□□□ -0.3
NUP54-205ENST00000507257 DCANP1Q8TF63 244 aa13.15□□□□□ -0.3
NUP54-205ENST00000507257 OPRPNQ99935 248 aaPredicted RBP13.15□□□□□ -0.3
NUP54-205ENST00000507257 LINC00527Q9UJ94 153 aa13.15□□□□□ -0.3
NUP54-205ENST00000507257 LAMA5O15230 3695 aa13.14□□□□□ -0.31
NUP54-205ENST00000507257 TRAV12-3A0A0B4J271 114 aa13.14□□□□□ -0.31
NUP54-205ENST00000507257 A0A0J9YXV3 536 aa13.14□□□□□ -0.31
NUP54-205ENST00000507257 H7C2G1 150 aa13.14□□□□□ -0.31
NUP54-205ENST00000507257 IGHV3-30-3P0DP02 117 aa13.14□□□□□ -0.31
NUP54-205ENST00000507257 TEX49A0A1B0GTD5 131 aa13.13□□□□□ -0.31
NUP54-205ENST00000507257 ICOSQ9Y6W8 199 aa13.13□□□□□ -0.31
NUP54-205ENST00000507257 CACNA1BQ00975 2339 aa13.13□□□□□ -0.31
NUP54-205ENST00000507257 COX6CP09669 75 aa13.13□□□□□ -0.31
NUP54-205ENST00000507257 FAM74A4Q5TZK3 123 aa13.13□□□□□ -0.31
NUP54-205ENST00000507257 C15orf53Q8NAA6 179 aa13.13□□□□□ -0.31
NUP54-205ENST00000507257 TIMM21Q9BVV7 248 aa13.13□□□□□ -0.31
NUP54-205ENST00000507257 IGHV4-39P01824 125 aa13.12□□□□□ -0.31
NUP54-205ENST00000507257 C2orf82Q6UX34 121 aa13.12□□□□□ -0.31
NUP54-205ENST00000507257 RNF152Q8N8N0 203 aa13.12□□□□□ -0.31
NUP54-205ENST00000507257 AKAP13Q12802 2813 aa13.12□□□□□ -0.31
NUP54-205ENST00000507257 IGHV1-58A0A0C4DH39 117 aa13.11□□□□□ -0.31
NUP54-205ENST00000507257 DEFB104AQ8WTQ1 72 aa13.11□□□□□ -0.31
NUP54-205ENST00000507257 ATMQ13315 3056 aa13.11□□□□□ -0.31
NUP54-205ENST00000507257 H7C423 109 aa13.11□□□□□ -0.31
NUP54-205ENST00000507257 TIMM17BO60830 172 aa13.11□□□□□ -0.31
NUP54-205ENST00000507257 IGLV1-40P01703 118 aa13.11□□□□□ -0.31
NUP54-205ENST00000507257 MIAQ16674 131 aa13.11□□□□□ -0.31
NUP54-205ENST00000507257 DMXL1Q9Y485 3027 aa13.11□□□□□ -0.31
NUP54-205ENST00000507257 SPTBN2O15020 2390 aa13.11□□□□□ -0.31
NUP54-205ENST00000507257 IGHV1OR15-1A0A075B7D0 117 aa13.1□□□□□ -0.31
NUP54-205ENST00000507257 IGHV3-11P01762 117 aa13.09□□□□□ -0.31
NUP54-205ENST00000507257 BPESC1Q9GZL8 116 aa13.09□□□□□ -0.31
NUP54-205ENST00000507257 YAE1D1Q9NRH1 226 aa13.09□□□□□ -0.31
NUP54-205ENST00000507257 IGKV3-7A0A075B6H7 116 aa13.09□□□□□ -0.31
NUP54-205ENST00000507257 IGHV3-64A0A075B6Q5 118 aa13.09□□□□□ -0.31
NUP54-205ENST00000507257 LST1O00453 97 aa13.09□□□□□ -0.31
NUP54-205ENST00000507257 FAM104AQ969W3 186 aa13.09□□□□□ -0.31
NUP54-205ENST00000507257 ZNF580Q9UK33 172 aa13.09□□□□□ -0.31
NUP54-205ENST00000507257 LRBAP50851 2863 aa13.08□□□□□ -0.32
NUP54-205ENST00000507257 A0A1W2PPR1 153 aa13.08□□□□□ -0.32
NUP54-205ENST00000507257 PF4V1P10720 104 aa13.08□□□□□ -0.32
NUP54-205ENST00000507257 TINCRA0A1B0GVN0 87 aa13.07□□□□□ -0.32
NUP54-205ENST00000507257 CCDC179H3BU77 68 aa13.07□□□□□ -0.32
NUP54-205ENST00000507257 TRBV7-7A0A0K0K1E9 115 aa13.07□□□□□ -0.32
NUP54-205ENST00000507257 VSIG2Q96IQ7 327 aa13.07□□□□□ -0.32
NUP54-205ENST00000507257 SPXQ9BT56 116 aa13.07□□□□□ -0.32
NUP54-205ENST00000507257 BEX4Q9NWD9 120 aaPredicted RBP13.07□□□□□ -0.32
NUP54-205ENST00000507257 NDUFA12Q9UI09 145 aa13.07□□□□□ -0.32
NUP54-205ENST00000507257 TRGV11A0A075B6L2 103 aa13.06□□□□□ -0.32
NUP54-205ENST00000507257 A6NDX4 124 aa13.06□□□□□ -0.32
NUP54-205ENST00000507257 CD28P10747 220 aa13.06□□□□□ -0.32
NUP54-205ENST00000507257 CFHR3Q02985 330 aa13.06□□□□□ -0.32
NUP54-205ENST00000507257 TMEM61Q8N0U2 210 aa13.06□□□□□ -0.32
NUP54-205ENST00000507257 HRNRQ86YZ3 2850 aaPredicted RBP13.06□□□□□ -0.32
NUP54-205ENST00000507257 ADAMTSL4-AS1Q5T5F5 129 aa13.05□□□□□ -0.32
NUP54-205ENST00000507257 FAM110AQ9BQ89 295 aa13.05□□□□□ -0.32
NUP54-205ENST00000507257 PRRC2AP48634 2157 aaKnown RBP13.05□□□□□ -0.32
NUP54-205ENST00000507257 ZNF292O60281 2723 aa13.05□□□□□ -0.32
NUP54-205ENST00000507257 PRSS2P07478 247 aa13.04□□□□□ -0.32
NUP54-205ENST00000507257 MED13LQ71F56 2210 aa13.04□□□□□ -0.32
NUP54-205ENST00000507257 TLN1Q9Y490 2541 aaKnown RBP13.04□□□□□ -0.32
NUP54-205ENST00000507257 ACYP1P07311 99 aa13.03□□□□□ -0.32
NUP54-205ENST00000507257 SNRPD3P62318 126 aaKnown RBP13.03□□□□□ -0.32
NUP54-205ENST00000507257 IMUPQ9GZP8 106 aa13.03□□□□□ -0.32
NUP54-205ENST00000507257 GVINP1Q7Z2Y8 2422 aa13.03□□□□□ -0.32
NUP54-205ENST00000507257 PIK3CD-AS1Q5SR53 167 aa13.03□□□□□ -0.32
NUP54-205ENST00000507257 TRAV8-3A0A0A6YYJ7 113 aa13.02□□□□□ -0.32
NUP54-205ENST00000507257 K7EQG2 157 aa13.02□□□□□ -0.32
NUP54-205ENST00000507257 FOXC1Q12948 553 aa13.02□□□□□ -0.32
NUP54-205ENST00000507257 ADARB2-AS1A8MUL3 147 aa13.01□□□□□ -0.33
NUP54-205ENST00000507257 KLRB1Q12918 225 aa13.01□□□□□ -0.33
NUP54-205ENST00000507257 UBTD1Q9HAC8 227 aa13.01□□□□□ -0.33
NUP54-205ENST00000507257 TRAV12-2A0A075B6T6 113 aa13□□□□□ -0.33
NUP54-205ENST00000507257 EDN2P20800 178 aa13□□□□□ -0.33
NUP54-205ENST00000507257 IGHV3OR16-10A0A075B7F0 116 aa12.99□□□□□ -0.33
NUP54-205ENST00000507257 BRD3OSQ6XYD6 125 aa12.99□□□□□ -0.33
NUP54-205ENST00000507257 IGLV5-45A0A087WSX0 123 aa12.98□□□□□ -0.33
NUP54-205ENST00000507257 H3BUX3 64 aa12.98□□□□□ -0.33
NUP54-205ENST00000507257 CLEC2BQ92478 149 aa12.98□□□□□ -0.33
NUP54-205ENST00000507257 UBE2D4Q9Y2X8 147 aa12.98□□□□□ -0.33
NUP54-205ENST00000507257 TMEM89A2RUT3 159 aa12.98□□□□□ -0.33
NUP54-205ENST00000507257 NDUFA1O15239 70 aa12.98□□□□□ -0.33
NUP54-205ENST00000507257 TIRAPP58753 221 aa12.98□□□□□ -0.33
NUP54-205ENST00000507257 BLCAPP62952 87 aa12.98□□□□□ -0.33
NUP54-205ENST00000507257 LY6EQ16553 131 aa12.98□□□□□ -0.33
NUP54-205ENST00000507257 SPINK13Q1W4C9 94 aa12.98□□□□□ -0.33
NUP54-205ENST00000507257 TMEM101Q96IK0 257 aa12.98□□□□□ -0.33
NUP54-205ENST00000507257 CHCHD7Q9BUK0 85 aa12.97□□□□□ -0.33
NUP54-205ENST00000507257 TMEM126AQ9H061 195 aa12.97□□□□□ -0.33
NUP54-205ENST00000507257 PTPRQQ9UMZ3 2332 aa12.97□□□□□ -0.33
NUP54-205ENST00000507257 PSMB8P28062 276 aa12.96□□□□□ -0.33
NUP54-205ENST00000507257 TNFRSF18Q9Y5U5 241 aa12.96□□□□□ -0.33
NUP54-205ENST00000507257 DUX3Q96PT4 197 aa12.96□□□□□ -0.34
NUP54-205ENST00000507257 PPDPFQ9H3Y8 114 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms