RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-222ENST00000600320 FAM74A4Q5TZK3 123 aa14.02□□□□□ -0.17
SHKBP1-222ENST00000600320 C14orf178Q8N769 122 aaPredicted RBP14.02□□□□□ -0.17
SHKBP1-222ENST00000600320 VSIG2Q96IQ7 327 aa14.02□□□□□ -0.17
SHKBP1-222ENST00000600320 KIF25-AS1Q9Y6Z4 181 aa14.02□□□□□ -0.17
SHKBP1-222ENST00000600320 TRAV26-1A0A087WT03 109 aa14.01□□□□□ -0.17
SHKBP1-222ENST00000600320 A0A0J9YY99 117 aa14.01□□□□□ -0.17
SHKBP1-222ENST00000600320 TWIST1Q15672 202 aa14.01□□□□□ -0.17
SHKBP1-222ENST00000600320 AP1S3Q96PC3 154 aa14.01□□□□□ -0.17
SHKBP1-222ENST00000600320 A0A1B0GUT8 65 aa14□□□□□ -0.17
SHKBP1-222ENST00000600320 GATA1P15976 413 aaPredicted RBP14□□□□□ -0.17
SHKBP1-222ENST00000600320 EVI2AP22794 236 aa14□□□□□ -0.17
SHKBP1-222ENST00000600320 CRYBA4P53673 196 aa14□□□□□ -0.17
SHKBP1-222ENST00000600320 ZFP2Q6ZN57 461 aa14□□□□□ -0.17
SHKBP1-222ENST00000600320 CTDSP1Q9GZU7 261 aa14□□□□□ -0.17
SHKBP1-222ENST00000600320 HHLA3Q9XRX5 114 aa14□□□□□ -0.17
SHKBP1-222ENST00000600320 KLK5Q9Y337 293 aaPredicted RBP14□□□□□ -0.17
SHKBP1-222ENST00000600320 STARD9Q9P2P6 4700 aa14□□□□□ -0.17
SHKBP1-222ENST00000600320 RHODO00212 210 aa13.99□□□□□ -0.17
SHKBP1-222ENST00000600320 CIDEAO60543 219 aa13.99□□□□□ -0.17
SHKBP1-222ENST00000600320 FAM3BP58499 235 aaPredicted RBP13.99□□□□□ -0.17
SHKBP1-222ENST00000600320 LINC00315P59091 139 aa13.99□□□□□ -0.17
SHKBP1-222ENST00000600320 RHEBQ15382 184 aa13.99□□□□□ -0.17
SHKBP1-222ENST00000600320 SVBPQ8N300 66 aa13.99□□□□□ -0.17
SHKBP1-222ENST00000600320 BORCS7Q96B45 105 aa13.99□□□□□ -0.17
SHKBP1-222ENST00000600320 PRO0255Q9UI72 69 aa13.99□□□□□ -0.17
SHKBP1-222ENST00000600320 TRGC1P0CF51 173 aa13.98□□□□□ -0.17
SHKBP1-222ENST00000600320 RPS10P5Q9NQ39 176 aa13.98□□□□□ -0.17
SHKBP1-222ENST00000600320 DYNC2H1Q8NCM8 4307 aaKnown RBP13.97□□□□□ -0.17
SHKBP1-222ENST00000600320 PAX4O43316 350 aa13.97□□□□□ -0.17
SHKBP1-222ENST00000600320 SNAPINO95295 136 aa13.97□□□□□ -0.17
SHKBP1-222ENST00000600320 RIGQ13278 110 aa13.97□□□□□ -0.17
SHKBP1-222ENST00000600320 ATRAIDQ6UW56 229 aa13.97□□□□□ -0.17
SHKBP1-222ENST00000600320 FAM210BQ96KR6 192 aa13.97□□□□□ -0.17
SHKBP1-222ENST00000600320 APLNQ9ULZ1 77 aa13.97□□□□□ -0.17
SHKBP1-222ENST00000600320 A0A087WWC5 75 aa13.96□□□□□ -0.17
SHKBP1-222ENST00000600320 LOC100131303A0A0U1RQF7 123 aa13.96□□□□□ -0.17
SHKBP1-222ENST00000600320 MGPP08493 103 aa13.96□□□□□ -0.17
SHKBP1-222ENST00000600320 SLAQ13239 276 aa13.96□□□□□ -0.17
SHKBP1-222ENST00000600320 MRPL54Q6P161 138 aaKnown RBP13.96□□□□□ -0.17
SHKBP1-222ENST00000600320 SLC25A29Q8N8R3 303 aa13.96□□□□□ -0.17
SHKBP1-222ENST00000600320 KMT2CQ8NEZ4 4911 aaKnown RBP13.95□□□□□ -0.18
SHKBP1-222ENST00000600320 SMIM17P0DL12 118 aa13.95□□□□□ -0.18
SHKBP1-222ENST00000600320 ZNF56Q15929 161 aa13.95□□□□□ -0.18
SHKBP1-222ENST00000600320 DPH3P1Q9H4G8 78 aa13.95□□□□□ -0.18
SHKBP1-222ENST00000600320 Q9UF83 564 aa13.95□□□□□ -0.18
SHKBP1-222ENST00000600320 TRBV6-4A0A1B0GX49 114 aa13.94□□□□□ -0.18
SHKBP1-222ENST00000600320 A0A1B0GXF2 115 aa13.94□□□□□ -0.18
SHKBP1-222ENST00000600320 IMMP2LQ96T52 175 aa13.94□□□□□ -0.18
SHKBP1-222ENST00000600320 TMEM242Q9NWH2 141 aa13.94□□□□□ -0.18
SHKBP1-222ENST00000600320 H3BNG1 76 aa13.93□□□□□ -0.18
SHKBP1-222ENST00000600320 K7EQD1 137 aa13.93□□□□□ -0.18
SHKBP1-222ENST00000600320 NUDT3O95989 172 aa13.93□□□□□ -0.18
SHKBP1-222ENST00000600320 P0DMU3 169 aa13.93□□□□□ -0.18
SHKBP1-222ENST00000600320 FAM231AP0DMU4 169 aa13.93□□□□□ -0.18
SHKBP1-222ENST00000600320 FAM231CP0DMU5 169 aa13.93□□□□□ -0.18
SHKBP1-222ENST00000600320 GYPEP15421 78 aa13.93□□□□□ -0.18
SHKBP1-222ENST00000600320 RAB4BP61018 213 aa13.93□□□□□ -0.18
SHKBP1-222ENST00000600320 A0A096LPF7 62 aa13.92□□□□□ -0.18
SHKBP1-222ENST00000600320 F5H697 171 aa13.92□□□□□ -0.18
SHKBP1-222ENST00000600320 CAMPP49913 170 aa13.92□□□□□ -0.18
SHKBP1-222ENST00000600320 RHOHQ15669 191 aa13.92□□□□□ -0.18
SHKBP1-222ENST00000600320 CSMD3Q7Z407 3707 aa13.91□□□□□ -0.18
SHKBP1-222ENST00000600320 SUMO4Q6EEV6 95 aa13.91□□□□□ -0.18
SHKBP1-222ENST00000600320 SMIM15Q7Z3B0 74 aa13.91□□□□□ -0.18
SHKBP1-222ENST00000600320 C15orf53Q8NAA6 179 aa13.91□□□□□ -0.18
SHKBP1-222ENST00000600320 RNF185Q96GF1 192 aa13.91□□□□□ -0.18
SHKBP1-222ENST00000600320 PRADC1Q9BSG0 188 aa13.91□□□□□ -0.18
SHKBP1-222ENST00000600320 TMEM191AQ9H0A3 160 aa13.91□□□□□ -0.18
SHKBP1-222ENST00000600320 URGCP-MRPS24S4R325 110 aa13.91□□□□□ -0.18
SHKBP1-222ENST00000600320 TCTAP57738 103 aa13.9□□□□□ -0.18
SHKBP1-222ENST00000600320 HBBP68871 147 aa13.9□□□□□ -0.18
SHKBP1-222ENST00000600320 KCNIP4Q6PIL6 250 aa13.9□□□□□ -0.18
SHKBP1-222ENST00000600320 AMN1Q8IY45 258 aa13.9□□□□□ -0.18
SHKBP1-222ENST00000600320 BTF3L4Q96K17 158 aa13.9□□□□□ -0.18
SHKBP1-222ENST00000600320 ICOSQ9Y6W8 199 aa13.9□□□□□ -0.18
SHKBP1-222ENST00000600320 PLECQ15149 4684 aaKnown RBP13.9□□□□□ -0.18
SHKBP1-222ENST00000600320 A0A1B0GW15 77 aa13.89□□□□□ -0.19
SHKBP1-222ENST00000600320 ATP5L2Q7Z4Y8 100 aa13.89□□□□□ -0.19
SHKBP1-222ENST00000600320 GATD1Q8NB37 220 aa13.89□□□□□ -0.19
SHKBP1-222ENST00000600320 GAGE12JA6NER3 117 aa13.88□□□□□ -0.19
SHKBP1-222ENST00000600320 M0QY20 66 aa13.88□□□□□ -0.19
SHKBP1-222ENST00000600320 LINC00694P0DN24 101 aa13.88□□□□□ -0.19
SHKBP1-222ENST00000600320 GAGE1Q13065 139 aa13.88□□□□□ -0.19
SHKBP1-222ENST00000600320 GAGE4Q13068 117 aa13.88□□□□□ -0.19
SHKBP1-222ENST00000600320 GAGE5Q13069 117 aa13.88□□□□□ -0.19
SHKBP1-222ENST00000600320 GAGE13Q4V321 117 aa13.88□□□□□ -0.19
SHKBP1-222ENST00000600320 TRAV26-2A0A0B4J265 109 aa13.87□□□□□ -0.19
SHKBP1-222ENST00000600320 RAB4AP20338 218 aa13.87□□□□□ -0.19
SHKBP1-222ENST00000600320 S100PP25815 95 aa13.87□□□□□ -0.19
SHKBP1-222ENST00000600320 MRPL23Q16540 153 aaKnown RBP13.87□□□□□ -0.19
SHKBP1-222ENST00000600320 NEXN-AS1Q8NBZ9 246 aa13.87□□□□□ -0.19
SHKBP1-222ENST00000600320 TRAV9-1A0A075B6T8 112 aa13.86□□□□□ -0.19
SHKBP1-222ENST00000600320 GAS8-AS1O95177 125 aa13.86□□□□□ -0.19
SHKBP1-222ENST00000600320 S100A8P05109 93 aa13.86□□□□□ -0.19
SHKBP1-222ENST00000600320 TRBV10-1A0A0K0K1A3 114 aa13.85□□□□□ -0.19
SHKBP1-222ENST00000600320 SRIP30626 198 aa13.85□□□□□ -0.19
SHKBP1-222ENST00000600320 FAM104BQ5XKR9 115 aa13.85□□□□□ -0.19
SHKBP1-222ENST00000600320 RYR3Q15413 4870 aa13.85□□□□□ -0.19
SHKBP1-222ENST00000600320 RASL11AQ6T310 242 aa13.84□□□□□ -0.19
SHKBP1-222ENST00000600320 ZNRF2Q8NHG8 242 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms