RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 CD7P09564 240 aa4.07□□□□□ -1.76
LIMA1-212ENST00000552491 RNASE4P34096 147 aaKnown RBP4.07□□□□□ -1.76
LIMA1-212ENST00000552491 LMO4P61968 165 aa4.07□□□□□ -1.76
LIMA1-212ENST00000552491 RPL39P62891 51 aaKnown RBP4.07□□□□□ -1.76
LIMA1-212ENST00000552491 FOXI1Q12951 378 aa4.07□□□□□ -1.76
LIMA1-212ENST00000552491 CFAP126Q5VTH2 177 aa4.07□□□□□ -1.76
LIMA1-212ENST00000552491 SCGB1D4Q6XE38 83 aa4.07□□□□□ -1.76
LIMA1-212ENST00000552491 Q6ZS46 218 aa4.07□□□□□ -1.76
LIMA1-212ENST00000552491 POM121L12Q8N7R1 296 aa4.07□□□□□ -1.76
LIMA1-212ENST00000552491 DLX4Q92988 240 aaPredicted RBP4.07□□□□□ -1.76
LIMA1-212ENST00000552491 TRAV41A0A0B4J266 112 aa4.07□□□□□ -1.76
LIMA1-212ENST00000552491 IGHV1-69DA0A0B4J2H0 117 aa4.07□□□□□ -1.76
LIMA1-212ENST00000552491 FAM223BA6NKX1 122 aa4.07□□□□□ -1.76
LIMA1-212ENST00000552491 NPFFO15130 113 aa4.07□□□□□ -1.76
LIMA1-212ENST00000552491 IGHV3-11P01762 117 aa4.07□□□□□ -1.76
LIMA1-212ENST00000552491 ARL3P36405 182 aa4.07□□□□□ -1.76
LIMA1-212ENST00000552491 SRSF9Q13242 221 aaKnown RBP eCLIP4.07□□□□□ -1.76
LIMA1-212ENST00000552491 PAPPA-AS1Q5QFB9 102 aa4.07□□□□□ -1.76
LIMA1-212ENST00000552491 FAM223AQ8IWN6 122 aa4.07□□□□□ -1.76
LIMA1-212ENST00000552491 WFDC12Q8WWY7 111 aa4.07□□□□□ -1.76
LIMA1-212ENST00000552491 BPESC1Q9GZL8 116 aa4.07□□□□□ -1.76
LIMA1-212ENST00000552491 CDIP1Q9H305 208 aa4.07□□□□□ -1.76
LIMA1-212ENST00000552491 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.06□□□□□ -1.76
LIMA1-212ENST00000552491 IGHV4OR15-8A0A075B7B6 117 aa4.06□□□□□ -1.76
LIMA1-212ENST00000552491 A0A087WW49 117 aa4.06□□□□□ -1.76
LIMA1-212ENST00000552491 TRBV7-9A0A0J9YWB2 115 aa4.06□□□□□ -1.76
LIMA1-212ENST00000552491 A0A0J9YY99 117 aa4.06□□□□□ -1.76
LIMA1-212ENST00000552491 IGIPA6NJ69 53 aa4.06□□□□□ -1.76
LIMA1-212ENST00000552491 SRD5A1P18405 259 aa4.06□□□□□ -1.76
LIMA1-212ENST00000552491 UBE2D3P61077 147 aa4.06□□□□□ -1.76
LIMA1-212ENST00000552491 UBE2D2P62837 147 aa4.06□□□□□ -1.76
LIMA1-212ENST00000552491 RPL32P62910 135 aaKnown RBP4.06□□□□□ -1.76
LIMA1-212ENST00000552491 APRG1Q8IVJ8 170 aa4.06□□□□□ -1.76
LIMA1-212ENST00000552491 SVIPQ8NHG7 77 aa4.06□□□□□ -1.76
LIMA1-212ENST00000552491 C1QTNF4Q9BXJ3 329 aa4.06□□□□□ -1.76
LIMA1-212ENST00000552491 LOC107984156A0A0G2JMH3 177 aa4.06□□□□□ -1.76
LIMA1-212ENST00000552491 NDUFA4O00483 81 aa4.06□□□□□ -1.76
LIMA1-212ENST00000552491 PSMB2P49721 201 aa4.06□□□□□ -1.76
LIMA1-212ENST00000552491 HERVK_113P61574 105 aa4.06□□□□□ -1.76
LIMA1-212ENST00000552491 TCTEX1D4Q5JR98 221 aa4.06□□□□□ -1.76
LIMA1-212ENST00000552491 BRD3OSQ6XYD6 125 aa4.06□□□□□ -1.76
LIMA1-212ENST00000552491 ARL17AQ8IVW1 177 aa4.06□□□□□ -1.76
LIMA1-212ENST00000552491 SYT8Q8NBV8 401 aa4.06□□□□□ -1.76
LIMA1-212ENST00000552491 ZNRF2Q8NHG8 242 aa4.06□□□□□ -1.76
LIMA1-212ENST00000552491 CARD19Q96LW7 228 aa4.06□□□□□ -1.76
LIMA1-212ENST00000552491 TP53TG1Q9Y2A0 90 aa4.06□□□□□ -1.76
LIMA1-212ENST00000552491 CELSR2Q9HCU4 2923 aa4.06□□□□□ -1.76
LIMA1-212ENST00000552491 CHD8Q9HCK8 2581 aa4.05□□□□□ -1.76
LIMA1-212ENST00000552491 CSPG4Q6UVK1 2322 aa4.05□□□□□ -1.76
LIMA1-212ENST00000552491 ACACBO00763 2458 aa4.05□□□□□ -1.76
LIMA1-212ENST00000552491 SPG11Q96JI7 2443 aa4.05□□□□□ -1.76
LIMA1-212ENST00000552491 CSMD2Q7Z408 3487 aa4.05□□□□□ -1.76
LIMA1-212ENST00000552491 A0A087WWL8 130 aa4.05□□□□□ -1.76
LIMA1-212ENST00000552491 EIF4EBP3O60516 100 aaPredicted RBP4.05□□□□□ -1.76
LIMA1-212ENST00000552491 NXPH4O95158 308 aa4.05□□□□□ -1.76
LIMA1-212ENST00000552491 CRIP2P52943 208 aaPredicted RBP4.05□□□□□ -1.76
LIMA1-212ENST00000552491 POLR2KP53803 58 aaKnown RBP4.05□□□□□ -1.76
LIMA1-212ENST00000552491 RPL11P62913 178 aaKnown RBP4.05□□□□□ -1.76
LIMA1-212ENST00000552491 PMVKQ15126 192 aa4.05□□□□□ -1.76
LIMA1-212ENST00000552491 LYRM7Q5U5X0 104 aa4.05□□□□□ -1.76
LIMA1-212ENST00000552491 NDUFA11Q86Y39 141 aa4.05□□□□□ -1.76
LIMA1-212ENST00000552491 ZNF418Q8TF45 676 aaPredicted RBP4.05□□□□□ -1.76
LIMA1-212ENST00000552491 AMELXQ99217 191 aa4.05□□□□□ -1.76
LIMA1-212ENST00000552491 TCL1BO95988 128 aa4.05□□□□□ -1.76
LIMA1-212ENST00000552491 TGFAP01135 160 aa4.05□□□□□ -1.76
LIMA1-212ENST00000552491 CFC1BP0CG36 223 aa4.05□□□□□ -1.76
LIMA1-212ENST00000552491 CFC1P0CG37 223 aa4.05□□□□□ -1.76
LIMA1-212ENST00000552491 SUMO4Q6EEV6 95 aa4.05□□□□□ -1.76
LIMA1-212ENST00000552491 TMEM141Q96I45 108 aa4.05□□□□□ -1.76
LIMA1-212ENST00000552491 OPRPNQ99935 248 aaPredicted RBP4.05□□□□□ -1.76
LIMA1-212ENST00000552491 UBTD1Q9HAC8 227 aa4.05□□□□□ -1.76
LIMA1-212ENST00000552491 MOB4Q9Y3A3 225 aa4.05□□□□□ -1.76
LIMA1-212ENST00000552491 TRBV20-1A0A075B6N2 111 aa4.04□□□□□ -1.76
LIMA1-212ENST00000552491 VCYO14598 125 aa4.04□□□□□ -1.76
LIMA1-212ENST00000552491 IGHV3-30P01768 117 aa4.04□□□□□ -1.76
LIMA1-212ENST00000552491 MT-ATP8P03928 68 aa4.04□□□□□ -1.76
LIMA1-212ENST00000552491 IGHV3-30-5P0DP03 117 aa4.04□□□□□ -1.76
LIMA1-212ENST00000552491 CKS1BP61024 79 aa4.04□□□□□ -1.76
LIMA1-212ENST00000552491 LCE4AQ5TA78 99 aa4.04□□□□□ -1.76
LIMA1-212ENST00000552491 SLC25A29Q8N8R3 303 aa4.04□□□□□ -1.76
LIMA1-212ENST00000552491 TIMM17AQ99595 171 aa4.04□□□□□ -1.76
LIMA1-212ENST00000552491 DOPEY2Q9Y3R5 2298 aa4.04□□□□□ -1.76
LIMA1-212ENST00000552491 BRI3O95415 125 aa4.04□□□□□ -1.76
LIMA1-212ENST00000552491 XGP55808 180 aa4.04□□□□□ -1.76
LIMA1-212ENST00000552491 LY6EQ16553 131 aa4.04□□□□□ -1.76
LIMA1-212ENST00000552491 SBSPONQ8IVN8 264 aa4.04□□□□□ -1.76
LIMA1-212ENST00000552491 CLUHP3Q96NS8 147 aa4.04□□□□□ -1.76
LIMA1-212ENST00000552491 KIR2DL4Q99706 377 aa4.04□□□□□ -1.76
LIMA1-212ENST00000552491 RHPN1-AS1Q9BWJ2 59 aa4.04□□□□□ -1.76
LIMA1-212ENST00000552491 VCX2Q9H322 139 aa4.04□□□□□ -1.76
LIMA1-212ENST00000552491 SDHAF1A6NFY7 115 aa4.03□□□□□ -1.76
LIMA1-212ENST00000552491 KLLNB2CW77 178 aa4.03□□□□□ -1.76
LIMA1-212ENST00000552491 CRYBA4P53673 196 aa4.03□□□□□ -1.76
LIMA1-212ENST00000552491 BLCAPP62952 87 aa4.03□□□□□ -1.76
LIMA1-212ENST00000552491 ZNF876PQ49A33 203 aa4.03□□□□□ -1.76
LIMA1-212ENST00000552491 TMEM170BQ5T4T1 132 aa4.03□□□□□ -1.76
LIMA1-212ENST00000552491 TEN1Q86WV5 123 aa4.03□□□□□ -1.76
LIMA1-212ENST00000552491 C10orf126Q8N4M7 172 aa4.03□□□□□ -1.76
LIMA1-212ENST00000552491 PPDPFLQ8WWR9 84 aa4.03□□□□□ -1.76
LIMA1-212ENST00000552491 USMG5Q96IX5 58 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 179.8 ms