RNA–Protein interactions for RNA: ENST00000494047.5

RFC4-214, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 1,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-214ENST00000494047 CFHR3Q02985 330 aa8.67□□□□□ -1.02
RFC4-214ENST00000494047 KRTAP21-3Q3LHN1 58 aa8.67□□□□□ -1.02
RFC4-214ENST00000494047 PIK3CD-AS1Q5SR53 167 aa8.67□□□□□ -1.02
RFC4-214ENST00000494047 TMEM219Q86XT9 240 aa8.67□□□□□ -1.02
RFC4-214ENST00000494047 ZNF479Q96JC4 524 aa8.67□□□□□ -1.02
RFC4-214ENST00000494047 VCX2Q9H322 139 aa8.67□□□□□ -1.02
RFC4-214ENST00000494047 WNK2Q9Y3S1 2297 aa8.67□□□□□ -1.02
RFC4-214ENST00000494047 CR1P17927 2039 aa8.66□□□□□ -1.02
RFC4-214ENST00000494047 TRGV11A0A075B6L2 103 aa8.66□□□□□ -1.02
RFC4-214ENST00000494047 IGHV3OR16-13A0A075B7E8 117 aa8.66□□□□□ -1.02
RFC4-214ENST00000494047 IGKV2D-26A0A0A0MRZ7 120 aa8.66□□□□□ -1.02
RFC4-214ENST00000494047 IGHV3-74A0A0B4J1X5 117 aa8.66□□□□□ -1.02
RFC4-214ENST00000494047 H3BUX3 64 aa8.66□□□□□ -1.02
RFC4-214ENST00000494047 LGALS9O00182 355 aa8.66□□□□□ -1.02
RFC4-214ENST00000494047 MGPP08493 103 aa8.66□□□□□ -1.02
RFC4-214ENST00000494047 SCGB1A1P11684 91 aa8.66□□□□□ -1.02
RFC4-214ENST00000494047 CRYBA4P53673 196 aa8.66□□□□□ -1.02
RFC4-214ENST00000494047 FXYD2P54710 66 aa8.66□□□□□ -1.02
RFC4-214ENST00000494047 FOXI2Q6ZQN5 318 aa8.66□□□□□ -1.02
RFC4-214ENST00000494047 PHLDA1Q8WV24 401 aaPredicted RBP8.66□□□□□ -1.02
RFC4-214ENST00000494047 C20orf173Q96LM9 149 aa8.66□□□□□ -1.02
RFC4-214ENST00000494047 JMJD8Q96S16 334 aa8.66□□□□□ -1.02
RFC4-214ENST00000494047 EDA2RQ9HAV5 297 aa8.66□□□□□ -1.02
RFC4-214ENST00000494047 NHP2Q9NX24 153 aaKnown RBP8.66□□□□□ -1.02
RFC4-214ENST00000494047 IGHV4-30-2A0A087WSY4 118 aa8.65□□□□□ -1.02
RFC4-214ENST00000494047 TRBV27A0A0K0K1C4 114 aa8.65□□□□□ -1.02
RFC4-214ENST00000494047 C11orf86A6NJI1 115 aa8.65□□□□□ -1.02
RFC4-214ENST00000494047 LINC01548A6NM66 108 aa8.65□□□□□ -1.02
RFC4-214ENST00000494047 GATA1P15976 413 aaPredicted RBP8.65□□□□□ -1.02
RFC4-214ENST00000494047 RNASE4P34096 147 aaKnown RBP8.65□□□□□ -1.02
RFC4-214ENST00000494047 PMVKQ15126 192 aa8.65□□□□□ -1.02
RFC4-214ENST00000494047 PRR9Q5T870 116 aa8.65□□□□□ -1.02
RFC4-214ENST00000494047 UNQ9165/PRO28630Q6UXU0 137 aa8.65□□□□□ -1.02
RFC4-214ENST00000494047 WFDC3Q8IUB2 231 aa8.65□□□□□ -1.02
RFC4-214ENST00000494047 C14orf178Q8N769 122 aaPredicted RBP8.65□□□□□ -1.02
RFC4-214ENST00000494047 BAALCQ8WXS3 180 aa8.65□□□□□ -1.02
RFC4-214ENST00000494047 SMR3AQ99954 134 aa8.65□□□□□ -1.02
RFC4-214ENST00000494047 CSTL1Q9H114 145 aa8.65□□□□□ -1.02
RFC4-214ENST00000494047 SPANXB1Q9NS25 103 aaPredicted RBP8.65□□□□□ -1.02
RFC4-214ENST00000494047 NIPBLQ6KC79 2804 aaeCLIP8.65□□□□□ -1.03
RFC4-214ENST00000494047 TRBV7-3A0A075B6L6 115 aa8.64□□□□□ -1.03
RFC4-214ENST00000494047 IGHV3-49A0A0A0MS15 119 aa8.64□□□□□ -1.03
RFC4-214ENST00000494047 TRAV2A0A0B4J234 112 aa8.64□□□□□ -1.03
RFC4-214ENST00000494047 TRAV26-2A0A0B4J265 109 aa8.64□□□□□ -1.03
RFC4-214ENST00000494047 RNASE3P12724 160 aaKnown RBP8.64□□□□□ -1.03
RFC4-214ENST00000494047 RRN3P1Q2M238 152 aa8.64□□□□□ -1.03
RFC4-214ENST00000494047 C12orf74Q32Q52 190 aa8.64□□□□□ -1.03
RFC4-214ENST00000494047 NSUN5P1Q3KNT7 163 aa8.64□□□□□ -1.03
RFC4-214ENST00000494047 TRPT1Q86TN4 253 aaKnown RBP8.64□□□□□ -1.03
RFC4-214ENST00000494047 ATP6V0E2Q8NHE4 81 aa8.64□□□□□ -1.03
RFC4-214ENST00000494047 RAB37Q96AX2 223 aa8.64□□□□□ -1.03
RFC4-214ENST00000494047 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.63□□□□□ -1.035e-8■■■■■ 64.9
RFC4-214ENST00000494047 A0A096LNT2 108 aa8.63□□□□□ -1.03
RFC4-214ENST00000494047 IGHV4-61A0A0C4DH41 118 aa8.63□□□□□ -1.03
RFC4-214ENST00000494047 IGLL5B9A064 214 aa8.63□□□□□ -1.03
RFC4-214ENST00000494047 GAS8-AS1O95177 125 aa8.63□□□□□ -1.03
RFC4-214ENST00000494047 ELANEP08246 267 aa8.63□□□□□ -1.03
RFC4-214ENST00000494047 PSMB8P28062 276 aa8.63□□□□□ -1.03
RFC4-214ENST00000494047 POLR2KP53803 58 aaKnown RBP8.63□□□□□ -1.03
RFC4-214ENST00000494047 SCGB1D4Q6XE38 83 aa8.63□□□□□ -1.03
RFC4-214ENST00000494047 DCANP1Q8TF63 244 aa8.63□□□□□ -1.03
RFC4-214ENST00000494047 FN1P02751 2386 aaKnown RBP8.63□□□□□ -1.03
RFC4-214ENST00000494047 ZANQ9Y493 2812 aa8.63□□□□□ -1.03
RFC4-214ENST00000494047 SONP18583 2426 aaKnown RBP8.62□□□□□ -1.03
RFC4-214ENST00000494047 TRBV20-1A0A075B6N2 111 aa8.62□□□□□ -1.03
RFC4-214ENST00000494047 HOXA3O43365 443 aaPredicted RBP8.62□□□□□ -1.03
RFC4-214ENST00000494047 C9orf85Q96MD7 179 aa8.62□□□□□ -1.03
RFC4-214ENST00000494047 PRADC1Q9BSG0 188 aa8.62□□□□□ -1.03
RFC4-214ENST00000494047 KIF25-AS1Q9Y6Z4 181 aa8.62□□□□□ -1.03
RFC4-214ENST00000494047 PRSS29PA6NIE9 313 aa8.61□□□□□ -1.03
RFC4-214ENST00000494047 ZNF815PA8K554 130 aa8.61□□□□□ -1.03
RFC4-214ENST00000494047 KRTAP1-1Q07627 177 aa8.61□□□□□ -1.03
RFC4-214ENST00000494047 BRD3OSQ6XYD6 125 aa8.61□□□□□ -1.03
RFC4-214ENST00000494047 ZFP2Q6ZN57 461 aa8.61□□□□□ -1.03
RFC4-214ENST00000494047 TEX29Q8N6K0 151 aa8.61□□□□□ -1.03
RFC4-214ENST00000494047 PTH2Q96A98 100 aa8.61□□□□□ -1.03
RFC4-214ENST00000494047 ZNF256Q9Y2P7 627 aaPredicted RBP8.61□□□□□ -1.03
RFC4-214ENST00000494047 CD7P09564 240 aa8.61□□□□□ -1.03
RFC4-214ENST00000494047 IGHV4-38-2P0DP08 117 aa8.61□□□□□ -1.03
RFC4-214ENST00000494047 NFE4Q86UQ8 179 aa8.61□□□□□ -1.03
RFC4-214ENST00000494047 LINC01356Q8N9X3 169 aa8.61□□□□□ -1.03
RFC4-214ENST00000494047 MAPK1IP1LQ8NDC0 245 aa8.61□□□□□ -1.03
RFC4-214ENST00000494047 DLX4Q92988 240 aaPredicted RBP8.61□□□□□ -1.03
RFC4-214ENST00000494047 TP53TG1Q9Y2A0 90 aa8.61□□□□□ -1.03
RFC4-214ENST00000494047 JMJD1CQ15652 2540 aa8.6□□□□□ -1.03
RFC4-214ENST00000494047 NF1P21359 2839 aa8.6□□□□□ -1.03
RFC4-214ENST00000494047 ABCA2Q9BZC7 2435 aa8.6□□□□□ -1.03
RFC4-214ENST00000494047 IGHV1OR15-1A0A075B7D0 117 aa8.6□□□□□ -1.03
RFC4-214ENST00000494047 A0A0J9YX75 114 aa8.6□□□□□ -1.03
RFC4-214ENST00000494047 SDHAF1A6NFY7 115 aa8.6□□□□□ -1.03
RFC4-214ENST00000494047 IGIPA6NJ69 53 aa8.6□□□□□ -1.03
RFC4-214ENST00000494047 CRLF1O75462 422 aa8.6□□□□□ -1.03
RFC4-214ENST00000494047 TRBV12-3P01733 135 aa8.6□□□□□ -1.03
RFC4-214ENST00000494047 LGALS1P09382 135 aaKnown RBP8.6□□□□□ -1.03
RFC4-214ENST00000494047 SRSF9Q13242 221 aaKnown RBP eCLIP8.6□□□□□ -1.03
RFC4-214ENST00000494047 LY6EQ16553 131 aa8.6□□□□□ -1.03
RFC4-214ENST00000494047 GAGE13Q4V321 117 aa8.6□□□□□ -1.03
RFC4-214ENST00000494047 SUMO4Q6EEV6 95 aa8.6□□□□□ -1.03
RFC4-214ENST00000494047 RPL39LQ96EH5 51 aaKnown RBP8.6□□□□□ -1.03
RFC4-214ENST00000494047 YAE1D1Q9NRH1 226 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms