RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 C16orf74Q96GX8 76 aa4.23□□□□□ -1.73
USP39-213ENST00000467885 SPATA25Q9BR10 227 aa4.23□□□□□ -1.73
USP39-213ENST00000467885 SAMD10Q9BYL1 202 aa4.23□□□□□ -1.73
USP39-213ENST00000467885 DKK2Q9UBU2 259 aa4.23□□□□□ -1.73
USP39-213ENST00000467885 URGCP-MRPS24S4R325 110 aa4.23□□□□□ -1.73
USP39-213ENST00000467885 TRAV9-1A0A075B6T8 112 aa4.22□□□□□ -1.73
USP39-213ENST00000467885 RS1O15537 224 aa4.22□□□□□ -1.73
USP39-213ENST00000467885 EVI2AP22794 236 aa4.22□□□□□ -1.73
USP39-213ENST00000467885 EMP1P54849 157 aa4.22□□□□□ -1.73
USP39-213ENST00000467885 CACNG7P62955 275 aa4.22□□□□□ -1.73
USP39-213ENST00000467885 ZNF415Q09FC8 603 aa4.22□□□□□ -1.73
USP39-213ENST00000467885 RIGQ13278 110 aa4.22□□□□□ -1.73
USP39-213ENST00000467885 TWIST1Q15672 202 aa4.22□□□□□ -1.73
USP39-213ENST00000467885 FAM222AQ5U5X8 452 aa4.22□□□□□ -1.73
USP39-213ENST00000467885 UFSP1Q6NVU6 142 aa4.22□□□□□ -1.73
USP39-213ENST00000467885 Q6ZSN1 163 aa4.22□□□□□ -1.73
USP39-213ENST00000467885 GATD1Q8NB37 220 aa4.22□□□□□ -1.73
USP39-213ENST00000467885 BTF3L4Q96K17 158 aa4.22□□□□□ -1.73
USP39-213ENST00000467885 C18orf15Q96N68 181 aa4.22□□□□□ -1.73
USP39-213ENST00000467885 TPPP3Q9BW30 176 aa4.22□□□□□ -1.73
USP39-213ENST00000467885 KRTAP9-3Q9BYQ3 159 aa4.22□□□□□ -1.73
USP39-213ENST00000467885 PHLDA3Q9Y5J5 127 aa4.22□□□□□ -1.73
USP39-213ENST00000467885 A0A0J9YWU9 116 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 GAGE12BA1L429 117 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 LYRM9A8MSI8 78 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 SNURFLB1AK76 121 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 ZNF561-AS1K7EIQ3 104 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 M0R381 172 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 GAGE7O76087 117 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 GAGE12FP0CL80 117 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 GAGE12GP0CL81 117 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 GAGE12IP0CL82 117 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 SPART-AS1P0CW21 52 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 RAB4AP20338 218 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 S100PP25815 95 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 CAMPP49913 170 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 FHL2Q14192 279 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 C12orf74Q32Q52 190 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 SPANXN1Q5VSR9 72 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 CFAP126Q5VTH2 177 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 MRPL54Q6P161 138 aaKnown RBP4.21□□□□□ -1.74
USP39-213ENST00000467885 KCNIP4Q6PIL6 250 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 RASL11AQ6T310 242 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 TMEM136Q6ZRR5 245 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 C14orf178Q8N769 122 aaPredicted RBP4.21□□□□□ -1.74
USP39-213ENST00000467885 RNF185Q96GF1 192 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 ZNF479Q96JC4 524 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 FAM210BQ96KR6 192 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 NDUFAF3Q9BU61 184 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 GNB1LQ9BYB4 327 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 TMEM191AQ9H0A3 160 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 MRPL16Q9NX20 251 aaKnown RBP4.21□□□□□ -1.74
USP39-213ENST00000467885 Q9UF83 564 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 CELA1Q9UNI1 258 aa4.21□□□□□ -1.74
USP39-213ENST00000467885 TRGV1A0A0A0MS02 117 aa4.2□□□□□ -1.74
USP39-213ENST00000467885 A0A1B0GW15 77 aa4.2□□□□□ -1.74
USP39-213ENST00000467885 PHOX2AO14813 284 aa4.2□□□□□ -1.74
USP39-213ENST00000467885 GAS8-AS1O95177 125 aa4.2□□□□□ -1.74
USP39-213ENST00000467885 TNFRSF6BO95407 300 aa4.2□□□□□ -1.74
USP39-213ENST00000467885 DEFB130BP0DP73 79 aa4.2□□□□□ -1.74
USP39-213ENST00000467885 DEFB130AP0DP74 79 aa4.2□□□□□ -1.74
USP39-213ENST00000467885 FAM104BQ5XKR9 115 aa4.2□□□□□ -1.74
USP39-213ENST00000467885 ATP5L2Q7Z4Y8 100 aa4.2□□□□□ -1.74
USP39-213ENST00000467885 ZFP82Q8N141 532 aa4.2□□□□□ -1.74
USP39-213ENST00000467885 SYT8Q8NBV8 401 aa4.2□□□□□ -1.74
USP39-213ENST00000467885 C11orf68Q9H3H3 251 aaKnown RBP4.2□□□□□ -1.74
USP39-213ENST00000467885 EDA2RQ9HAV5 297 aa4.2□□□□□ -1.74
USP39-213ENST00000467885 COL7A1Q02388 2944 aa4.2□□□□□ -1.74
USP39-213ENST00000467885 MUC4Q99102 2169 aa4.2□□□□□ -1.74
USP39-213ENST00000467885 DNAH9Q9NYC9 4486 aa4.19□□□□□ -1.74
USP39-213ENST00000467885 A0A087WWL8 130 aa4.19□□□□□ -1.74
USP39-213ENST00000467885 A8MWV9 139 aa4.19□□□□□ -1.74
USP39-213ENST00000467885 M0QY20 66 aa4.19□□□□□ -1.74
USP39-213ENST00000467885 CIDEAO60543 219 aa4.19□□□□□ -1.74
USP39-213ENST00000467885 HOXA5P20719 270 aa4.19□□□□□ -1.74
USP39-213ENST00000467885 HBBP68871 147 aa4.19□□□□□ -1.74
USP39-213ENST00000467885 MRPL51Q4U2R6 128 aaKnown RBP4.19□□□□□ -1.74
USP39-213ENST00000467885 ZFP2Q6ZN57 461 aa4.19□□□□□ -1.74
USP39-213ENST00000467885 AMN1Q8IY45 258 aa4.19□□□□□ -1.74
USP39-213ENST00000467885 OR4C5Q8NGB2 326 aa4.19□□□□□ -1.74
USP39-213ENST00000467885 U3KQK5 164 aa4.19□□□□□ -1.74
USP39-213ENST00000467885 TENM3Q9P273 2699 aa4.18□□□□□ -1.74
USP39-213ENST00000467885 FBN3Q75N90 2809 aa4.18□□□□□ -1.74
USP39-213ENST00000467885 TRGV2A0A075B6R0 118 aa4.18□□□□□ -1.74
USP39-213ENST00000467885 IGHV3-73A0A0B4J1V6 119 aa4.18□□□□□ -1.74
USP39-213ENST00000467885 TRAV4A0A0B4J268 109 aa4.18□□□□□ -1.74
USP39-213ENST00000467885 IGHV3-53P01767 116 aa4.18□□□□□ -1.74
USP39-213ENST00000467885 GATA1P15976 413 aaPredicted RBP4.18□□□□□ -1.74
USP39-213ENST00000467885 RAB5AP20339 215 aa4.18□□□□□ -1.74
USP39-213ENST00000467885 NANOS2P60321 138 aaKnown RBP4.18□□□□□ -1.74
USP39-213ENST00000467885 RAB4BP61018 213 aa4.18□□□□□ -1.74
USP39-213ENST00000467885 FABP9Q0Z7S8 132 aa4.18□□□□□ -1.74
USP39-213ENST00000467885 SLAQ13239 276 aa4.18□□□□□ -1.74
USP39-213ENST00000467885 COX19Q49B96 90 aa4.18□□□□□ -1.74
USP39-213ENST00000467885 C11orf45Q8TAV5 145 aa4.18□□□□□ -1.74
USP39-213ENST00000467885 FRZBQ92765 325 aa4.18□□□□□ -1.74
USP39-213ENST00000467885 BORCS7Q96B45 105 aa4.18□□□□□ -1.74
USP39-213ENST00000467885 DPH3P1Q9H4G8 78 aa4.18□□□□□ -1.74
USP39-213ENST00000467885 HHLA3Q9XRX5 114 aa4.18□□□□□ -1.74
USP39-213ENST00000467885 HUWE1Q7Z6Z7 4374 aaKnown RBP4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms