RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 A0A087WWL8 130 aa11.91□□□□□ -0.5
COL7A1-202ENST00000422991 IGLL5B9A064 214 aa11.91□□□□□ -0.5
COL7A1-202ENST00000422991 RHODO00212 210 aa11.91□□□□□ -0.5
COL7A1-202ENST00000422991 NTF3P20783 257 aa11.91□□□□□ -0.5
COL7A1-202ENST00000422991 NUP35Q8NFH5 326 aa11.91□□□□□ -0.5
COL7A1-202ENST00000422991 NAT8BQ9UHF3 227 aa11.91□□□□□ -0.5
COL7A1-202ENST00000422991 TRAV26-1A0A087WT03 109 aa11.9□□□□□ -0.5
COL7A1-202ENST00000422991 IGHV3-73A0A0B4J1V6 119 aa11.9□□□□□ -0.5
COL7A1-202ENST00000422991 CRYGDP07320 174 aa11.9□□□□□ -0.5
COL7A1-202ENST00000422991 GATA1P15976 413 aaPredicted RBP11.9□□□□□ -0.5
COL7A1-202ENST00000422991 FAM74A4Q5TZK3 123 aa11.9□□□□□ -0.5
COL7A1-202ENST00000422991 PRO0255Q9UI72 69 aa11.9□□□□□ -0.5
COL7A1-202ENST00000422991 PLECQ15149 4684 aaKnown RBP11.9□□□□□ -0.51
COL7A1-202ENST00000422991 A0A1B0GUT8 65 aa11.89□□□□□ -0.51
COL7A1-202ENST00000422991 CRYBA4P53673 196 aa11.89□□□□□ -0.51
COL7A1-202ENST00000422991 SLAQ13239 276 aa11.89□□□□□ -0.51
COL7A1-202ENST00000422991 TWIST1Q15672 202 aa11.89□□□□□ -0.51
COL7A1-202ENST00000422991 C14orf178Q8N769 122 aaPredicted RBP11.89□□□□□ -0.51
COL7A1-202ENST00000422991 CLRN3Q8NCR9 226 aa11.89□□□□□ -0.51
COL7A1-202ENST00000422991 BORCS7Q96B45 105 aa11.89□□□□□ -0.51
COL7A1-202ENST00000422991 VSIG2Q96IQ7 327 aa11.89□□□□□ -0.51
COL7A1-202ENST00000422991 HHLA3Q9XRX5 114 aa11.89□□□□□ -0.51
COL7A1-202ENST00000422991 A0A0J9YY99 117 aa11.88□□□□□ -0.51
COL7A1-202ENST00000422991 H3BNG1 76 aa11.88□□□□□ -0.51
COL7A1-202ENST00000422991 APOC3P02656 99 aa11.88□□□□□ -0.51
COL7A1-202ENST00000422991 TRGC1P0CF51 173 aa11.88□□□□□ -0.51
COL7A1-202ENST00000422991 RHEBQ15382 184 aa11.88□□□□□ -0.51
COL7A1-202ENST00000422991 CTDSP1Q9GZU7 261 aa11.88□□□□□ -0.51
COL7A1-202ENST00000422991 KIF25-AS1Q9Y6Z4 181 aa11.88□□□□□ -0.51
COL7A1-202ENST00000422991 C7orf77A4D0Y5 90 aa11.87□□□□□ -0.51
COL7A1-202ENST00000422991 PAX4O43316 350 aa11.87□□□□□ -0.51
COL7A1-202ENST00000422991 TCTAP57738 103 aa11.87□□□□□ -0.51
COL7A1-202ENST00000422991 Q6ZSN1 163 aa11.87□□□□□ -0.51
COL7A1-202ENST00000422991 C15orf53Q8NAA6 179 aa11.87□□□□□ -0.51
COL7A1-202ENST00000422991 APLNQ9ULZ1 77 aa11.87□□□□□ -0.51
COL7A1-202ENST00000422991 TRBV6-4A0A1B0GX49 114 aa11.86□□□□□ -0.51
COL7A1-202ENST00000422991 SMIM17P0DL12 118 aa11.86□□□□□ -0.51
COL7A1-202ENST00000422991 EVI2AP22794 236 aa11.86□□□□□ -0.51
COL7A1-202ENST00000422991 LINC00315P59091 139 aa11.86□□□□□ -0.51
COL7A1-202ENST00000422991 SVBPQ8N300 66 aa11.86□□□□□ -0.51
COL7A1-202ENST00000422991 SLC25A29Q8N8R3 303 aa11.86□□□□□ -0.51
COL7A1-202ENST00000422991 A0A087WWC5 75 aa11.85□□□□□ -0.51
COL7A1-202ENST00000422991 K7EQD1 137 aa11.85□□□□□ -0.51
COL7A1-202ENST00000422991 RIGQ13278 110 aa11.85□□□□□ -0.51
COL7A1-202ENST00000422991 DPH3P1Q9H4G8 78 aa11.85□□□□□ -0.51
COL7A1-202ENST00000422991 LCE6AA0A183 80 aa11.84□□□□□ -0.51
COL7A1-202ENST00000422991 SNAPINO95295 136 aa11.84□□□□□ -0.51
COL7A1-202ENST00000422991 FAM3BP58499 235 aaPredicted RBP11.84□□□□□ -0.51
COL7A1-202ENST00000422991 RAB4BP61018 213 aa11.84□□□□□ -0.51
COL7A1-202ENST00000422991 RHOHQ15669 191 aa11.84□□□□□ -0.51
COL7A1-202ENST00000422991 ZNF56Q15929 161 aa11.84□□□□□ -0.51
COL7A1-202ENST00000422991 IMMP2LQ96T52 175 aa11.84□□□□□ -0.51
COL7A1-202ENST00000422991 TMEM242Q9NWH2 141 aa11.84□□□□□ -0.51
COL7A1-202ENST00000422991 ALMS1Q8TCU4 4167 aa11.83□□□□□ -0.52
COL7A1-202ENST00000422991 LYSTQ99698 3801 aa11.83□□□□□ -0.52
COL7A1-202ENST00000422991 NUDT3O95989 172 aa11.83□□□□□ -0.52
COL7A1-202ENST00000422991 MGPP08493 103 aa11.83□□□□□ -0.52
COL7A1-202ENST00000422991 SMIM15Q7Z3B0 74 aa11.83□□□□□ -0.52
COL7A1-202ENST00000422991 RPS10P5Q9NQ39 176 aa11.83□□□□□ -0.52
COL7A1-202ENST00000422991 SACSQ9NZJ4 4579 aa11.82□□□□□ -0.52
COL7A1-202ENST00000422991 A0A096LPF7 62 aa11.82□□□□□ -0.52
COL7A1-202ENST00000422991 LOC100131303A0A0U1RQF7 123 aa11.82□□□□□ -0.52
COL7A1-202ENST00000422991 A0A1B0GW15 77 aa11.82□□□□□ -0.52
COL7A1-202ENST00000422991 A0A1B0GXF2 115 aa11.82□□□□□ -0.52
COL7A1-202ENST00000422991 GYPEP15421 78 aa11.82□□□□□ -0.52
COL7A1-202ENST00000422991 MRPL54Q6P161 138 aaKnown RBP11.82□□□□□ -0.52
COL7A1-202ENST00000422991 PRADC1Q9BSG0 188 aa11.82□□□□□ -0.52
COL7A1-202ENST00000422991 TMEM191AQ9H0A3 160 aa11.82□□□□□ -0.52
COL7A1-202ENST00000422991 ICOSQ9Y6W8 199 aa11.82□□□□□ -0.52
COL7A1-202ENST00000422991 F5H697 171 aa11.81□□□□□ -0.52
COL7A1-202ENST00000422991 ATP5L2Q7Z4Y8 100 aa11.81□□□□□ -0.52
COL7A1-202ENST00000422991 HBBP68871 147 aa11.8□□□□□ -0.52
COL7A1-202ENST00000422991 MRPL23Q16540 153 aaKnown RBP11.8□□□□□ -0.52
COL7A1-202ENST00000422991 SUMO4Q6EEV6 95 aa11.8□□□□□ -0.52
COL7A1-202ENST00000422991 KCNIP4Q6PIL6 250 aa11.8□□□□□ -0.52
COL7A1-202ENST00000422991 Q9UF83 564 aa11.8□□□□□ -0.52
COL7A1-202ENST00000422991 RYR2Q92736 4967 aa11.8□□□□□ -0.52
COL7A1-202ENST00000422991 TRBV10-1A0A0K0K1A3 114 aa11.79□□□□□ -0.52
COL7A1-202ENST00000422991 P0DMU3 169 aa11.79□□□□□ -0.52
COL7A1-202ENST00000422991 FAM231AP0DMU4 169 aa11.79□□□□□ -0.52
COL7A1-202ENST00000422991 FAM231CP0DMU5 169 aa11.79□□□□□ -0.52
COL7A1-202ENST00000422991 LINC00694P0DN24 101 aa11.79□□□□□ -0.52
COL7A1-202ENST00000422991 CAMPP49913 170 aa11.79□□□□□ -0.52
COL7A1-202ENST00000422991 BTF3L4Q96K17 158 aa11.79□□□□□ -0.52
COL7A1-202ENST00000422991 DNAH1Q9P2D7 4330 aa11.78□□□□□ -0.52
COL7A1-202ENST00000422991 TRAV9-1A0A075B6T8 112 aa11.78□□□□□ -0.52
COL7A1-202ENST00000422991 M0QY20 66 aa11.78□□□□□ -0.52
COL7A1-202ENST00000422991 S100A8P05109 93 aa11.78□□□□□ -0.52
COL7A1-202ENST00000422991 S100PP25815 95 aa11.78□□□□□ -0.52
COL7A1-202ENST00000422991 SRIP30626 198 aa11.78□□□□□ -0.52
COL7A1-202ENST00000422991 ATRAIDQ6UW56 229 aa11.78□□□□□ -0.52
COL7A1-202ENST00000422991 GATD1Q8NB37 220 aa11.78□□□□□ -0.52
COL7A1-202ENST00000422991 H7C1H1 209 aa11.77□□□□□ -0.53
COL7A1-202ENST00000422991 RNF185Q96GF1 192 aa11.77□□□□□ -0.53
COL7A1-202ENST00000422991 URGCP-MRPS24S4R325 110 aa11.77□□□□□ -0.53
COL7A1-202ENST00000422991 VPS13DQ5THJ4 4388 aa11.76□□□□□ -0.53
COL7A1-202ENST00000422991 GAGE12JA6NER3 117 aa11.76□□□□□ -0.53
COL7A1-202ENST00000422991 GAGE1Q13065 139 aa11.76□□□□□ -0.53
COL7A1-202ENST00000422991 GAGE4Q13068 117 aa11.76□□□□□ -0.53
COL7A1-202ENST00000422991 GAGE5Q13069 117 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms