RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 TMEM61Q8N0U2 210 aa3.75□□□□□ -1.81
PCDH9-201ENST00000377861 NRACQ8N912 160 aa3.75□□□□□ -1.81
PCDH9-201ENST00000377861 SPTBN2O15020 2390 aa3.75□□□□□ -1.81
PCDH9-201ENST00000377861 TLN1Q9Y490 2541 aaKnown RBP3.75□□□□□ -1.81
PCDH9-201ENST00000377861 IGHV3-33P01772 117 aa3.75□□□□□ -1.81
PCDH9-201ENST00000377861 RNASE8Q8TDE3 154 aaKnown RBP3.75□□□□□ -1.81
PCDH9-201ENST00000377861 TPSG1Q9NRR2 321 aa3.75□□□□□ -1.81
PCDH9-201ENST00000377861 RBMY1FQ15415 496 aaKnown RBP3.75□□□□□ -1.81
PCDH9-201ENST00000377861 LINC00526Q96FQ7 95 aa3.75□□□□□ -1.81
PCDH9-201ENST00000377861 RNF185Q96GF1 192 aa3.75□□□□□ -1.81
PCDH9-201ENST00000377861 TMEM223A0PJW6 202 aa3.75□□□□□ -1.81
PCDH9-201ENST00000377861 PCP2Q8IVA1 136 aa3.75□□□□□ -1.81
PCDH9-201ENST00000377861 F8WEM9 126 aa3.75□□□□□ -1.81
PCDH9-201ENST00000377861 ZFAND3Q9H8U3 227 aa3.74□□□□□ -1.81
PCDH9-201ENST00000377861 NOTCH2Q04721 2471 aa3.74□□□□□ -1.81
PCDH9-201ENST00000377861 IGHV3-30P01768 117 aa3.74□□□□□ -1.81
PCDH9-201ENST00000377861 IGHV3-30-5P0DP03 117 aa3.74□□□□□ -1.81
PCDH9-201ENST00000377861 IGKV3D-20A0A0C4DH25 116 aa3.74□□□□□ -1.81
PCDH9-201ENST00000377861 DEFB121Q5J5C9 76 aa3.74□□□□□ -1.81
PCDH9-201ENST00000377861 SEM1Q6ZVN7 128 aa3.74□□□□□ -1.81
PCDH9-201ENST00000377861 HIVEP2P31629 2446 aa3.74□□□□□ -1.81
PCDH9-201ENST00000377861 HIGD2BQ4VC39 106 aa3.74□□□□□ -1.81
PCDH9-201ENST00000377861 C9orf153Q5TBE3 101 aa3.74□□□□□ -1.81
PCDH9-201ENST00000377861 IGHV3-16A0A0C4DH30 117 aa3.74□□□□□ -1.81
PCDH9-201ENST00000377861 TRBV7-7A0A0K0K1E9 115 aa3.74□□□□□ -1.81
PCDH9-201ENST00000377861 ERC2-IT1O76042 136 aa3.74□□□□□ -1.81
PCDH9-201ENST00000377861 PSMB8P28062 276 aa3.74□□□□□ -1.81
PCDH9-201ENST00000377861 IGHV3-30-3P0DP02 117 aa3.74□□□□□ -1.81
PCDH9-201ENST00000377861 SPART-AS1P0CW21 52 aa3.74□□□□□ -1.81
PCDH9-201ENST00000377861 PFN2P35080 140 aa3.74□□□□□ -1.81
PCDH9-201ENST00000377861 K7EQG2 157 aa3.74□□□□□ -1.81
PCDH9-201ENST00000377861 UBE2BP63146 152 aa3.74□□□□□ -1.81
PCDH9-201ENST00000377861 H3BNG1 76 aa3.74□□□□□ -1.81
PCDH9-201ENST00000377861 IGHV4-59P01825 116 aa3.74□□□□□ -1.81
PCDH9-201ENST00000377861 AMELXQ99217 191 aa3.73□□□□□ -1.81
PCDH9-201ENST00000377861 LINC00474Q9P2X8 69 aa3.73□□□□□ -1.81
PCDH9-201ENST00000377861 ICOSQ9Y6W8 199 aa3.73□□□□□ -1.81
PCDH9-201ENST00000377861 TET1Q8NFU7 2136 aa3.73□□□□□ -1.81
PCDH9-201ENST00000377861 H7C2G1 150 aa3.73□□□□□ -1.81
PCDH9-201ENST00000377861 ZNF561-AS1K7EIQ3 104 aa3.73□□□□□ -1.81
PCDH9-201ENST00000377861 C14orf177Q52M58 125 aa3.73□□□□□ -1.81
PCDH9-201ENST00000377861 SCN5AQ14524 2016 aa3.73□□□□□ -1.81
PCDH9-201ENST00000377861 ANK1P16157 1881 aa3.73□□□□□ -1.81
PCDH9-201ENST00000377861 SND1-IT1Q9HBX3 110 aa3.73□□□□□ -1.81
PCDH9-201ENST00000377861 CXCL6P80162 114 aa3.73□□□□□ -1.81
PCDH9-201ENST00000377861 ABCA7Q8IZY2 2146 aa3.73□□□□□ -1.81
PCDH9-201ENST00000377861 Q6ZPA2 131 aa3.73□□□□□ -1.81
PCDH9-201ENST00000377861 TRAV8-3A0A0A6YYJ7 113 aa3.73□□□□□ -1.81
PCDH9-201ENST00000377861 WFDC3Q8IUB2 231 aa3.73□□□□□ -1.81
PCDH9-201ENST00000377861 MUSTN1Q8IVN3 82 aa3.73□□□□□ -1.81
PCDH9-201ENST00000377861 ARHGEF17Q96PE2 2063 aaPredicted RBP3.73□□□□□ -1.81
PCDH9-201ENST00000377861 HTN1P15515 57 aa3.73□□□□□ -1.81
PCDH9-201ENST00000377861 LINC00205P59089 165 aa3.73□□□□□ -1.81
PCDH9-201ENST00000377861 IGHV3-21A0A0B4J1V1 117 aa3.73□□□□□ -1.81
PCDH9-201ENST00000377861 DHRS4-AS1Q9P1J3 65 aa3.73□□□□□ -1.81
PCDH9-201ENST00000377861 DOCK8Q8NF50 2099 aa3.73□□□□□ -1.81
PCDH9-201ENST00000377861 BRWD3Q6RI45 1802 aa3.73□□□□□ -1.81
PCDH9-201ENST00000377861 NPC2P61916 151 aa3.72□□□□□ -1.81
PCDH9-201ENST00000377861 C5orf47Q569G3 176 aa3.72□□□□□ -1.81
PCDH9-201ENST00000377861 LST1O00453 97 aa3.72□□□□□ -1.81
PCDH9-201ENST00000377861 HOXD3P31249 432 aaPredicted RBP3.72□□□□□ -1.81
PCDH9-201ENST00000377861 LINC01548A6NM66 108 aa3.72□□□□□ -1.81
PCDH9-201ENST00000377861 PTPRDP23468 1912 aa3.72□□□□□ -1.81
PCDH9-201ENST00000377861 MP68P56378 58 aa3.72□□□□□ -1.81
PCDH9-201ENST00000377861 KHDC1LQ5JSQ8 128 aa3.72□□□□□ -1.81
PCDH9-201ENST00000377861 USF3Q68DE3 2245 aa3.72□□□□□ -1.81
PCDH9-201ENST00000377861 C9orf85Q96MD7 179 aa3.72□□□□□ -1.81
PCDH9-201ENST00000377861 Q6YL49 198 aa3.72□□□□□ -1.81
PCDH9-201ENST00000377861 SCN8AQ9UQD0 1980 aa3.72□□□□□ -1.81
PCDH9-201ENST00000377861 Q9H8V8 135 aa3.72□□□□□ -1.81
PCDH9-201ENST00000377861 IGHV3-66A0A0C4DH42 116 aa3.72□□□□□ -1.81
PCDH9-201ENST00000377861 C2orf91Q6ZV80 131 aa3.72□□□□□ -1.81
PCDH9-201ENST00000377861 RSPO4Q2I0M5 234 aaPredicted RBP3.72□□□□□ -1.81
PCDH9-201ENST00000377861 CACNA1GO43497 2377 aa3.72□□□□□ -1.81
PCDH9-201ENST00000377861 FXYD2P54710 66 aa3.72□□□□□ -1.81
PCDH9-201ENST00000377861 EP400Q96L91 3159 aa3.72□□□□□ -1.81
PCDH9-201ENST00000377861 GDF5OSQ5U4N7 250 aa3.72□□□□□ -1.81
PCDH9-201ENST00000377861 SMIM26A0A096LP01 95 aa3.72□□□□□ -1.81
PCDH9-201ENST00000377861 C3orf22Q8N5N4 141 aa3.72□□□□□ -1.81
PCDH9-201ENST00000377861 APELAP0DMC3 54 aa3.72□□□□□ -1.81
PCDH9-201ENST00000377861 Q8N976 141 aa3.72□□□□□ -1.81
PCDH9-201ENST00000377861 C11orf71Q6IPW1 123 aa3.71□□□□□ -1.82
PCDH9-201ENST00000377861 ZNRD1Q9P1U0 126 aa3.71□□□□□ -1.82
PCDH9-201ENST00000377861 CTSZQ9UBR2 303 aa3.71□□□□□ -1.82
PCDH9-201ENST00000377861 Q8N2B8 174 aa3.71□□□□□ -1.82
PCDH9-201ENST00000377861 NTN5Q8WTR8 489 aaPredicted RBP3.71□□□□□ -1.82
PCDH9-201ENST00000377861 ADAMTS9Q9P2N4 1935 aa3.71□□□□□ -1.82
PCDH9-201ENST00000377861 SUMO4Q6EEV6 95 aa3.71□□□□□ -1.82
PCDH9-201ENST00000377861 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.71□□□□□ -1.82
PCDH9-201ENST00000377861 IGLV5-45A0A087WSX0 123 aa3.71□□□□□ -1.82
PCDH9-201ENST00000377861 NDUFA7O95182 113 aa3.71□□□□□ -1.82
PCDH9-201ENST00000377861 CD164L2Q6UWJ8 174 aa3.71□□□□□ -1.82
PCDH9-201ENST00000377861 SYNJ2BPP57105 145 aa3.71□□□□□ -1.82
PCDH9-201ENST00000377861 RS1O15537 224 aa3.71□□□□□ -1.82
PCDH9-201ENST00000377861 ARFGEF3Q5TH69 2177 aa3.71□□□□□ -1.82
PCDH9-201ENST00000377861 IGLV2-18A0A075B6J9 118 aa3.71□□□□□ -1.82
PCDH9-201ENST00000377861 CCL18P55774 89 aa3.71□□□□□ -1.82
PCDH9-201ENST00000377861 C8orf49Q96NF6 230 aa3.71□□□□□ -1.82
PCDH9-201ENST00000377861 IGHV4-39P01824 125 aa3.71□□□□□ -1.82
PCDH9-201ENST00000377861 DEFB114Q30KQ6 69 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms