RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 C2orf91Q6ZV80 131 aa10.9□□□□□ -0.67
CHD3-211ENST00000481999 NXT2Q9NPJ8 142 aaKnown RBP10.9□□□□□ -0.67
CHD3-211ENST00000481999 MAST4O15021 2626 aa10.89□□□□□ -0.67
CHD3-211ENST00000481999 IGKV3D-20A0A0C4DH25 116 aa10.89□□□□□ -0.67
CHD3-211ENST00000481999 VAMP3Q15836 100 aa10.89□□□□□ -0.67
CHD3-211ENST00000481999 TCTEX1D4Q5JR98 221 aa10.89□□□□□ -0.67
CHD3-211ENST00000481999 KHDC1LQ5JSQ8 128 aa10.89□□□□□ -0.67
CHD3-211ENST00000481999 SMPXQ9UHP9 88 aa10.89□□□□□ -0.67
CHD3-211ENST00000481999 CD5LO43866 347 aa10.88□□□□□ -0.67
CHD3-211ENST00000481999 TNFRSF6BO95407 300 aa10.88□□□□□ -0.67
CHD3-211ENST00000481999 FGF6P10767 208 aa10.88□□□□□ -0.67
CHD3-211ENST00000481999 C9orf47Q6ZRZ4 202 aa10.88□□□□□ -0.67
CHD3-211ENST00000481999 DNAJC9-AS1A6NH13 148 aa10.88□□□□□ -0.67
CHD3-211ENST00000481999 HOXD3P31249 432 aaPredicted RBP10.88□□□□□ -0.67
CHD3-211ENST00000481999 JMJD1CQ15652 2540 aa10.87□□□□□ -0.67
CHD3-211ENST00000481999 SLURP1P55000 103 aa10.87□□□□□ -0.67
CHD3-211ENST00000481999 YAE1D1Q9NRH1 226 aa10.87□□□□□ -0.67
CHD3-211ENST00000481999 SNAI2O43623 268 aa10.87□□□□□ -0.67
CHD3-211ENST00000481999 FCER1GP30273 86 aa10.87□□□□□ -0.67
CHD3-211ENST00000481999 SMIM15Q7Z3B0 74 aa10.87□□□□□ -0.67
CHD3-211ENST00000481999 BOD1L2Q8IYS8 172 aa10.87□□□□□ -0.67
CHD3-211ENST00000481999 ZNF580Q9UK33 172 aa10.87□□□□□ -0.67
CHD3-211ENST00000481999 SEC11AP67812 179 aa10.86□□□□□ -0.67
CHD3-211ENST00000481999 OR4C5Q8NGB2 326 aa10.86□□□□□ -0.67
CHD3-211ENST00000481999 FN1P02751 2386 aaKnown RBP10.86□□□□□ -0.67
CHD3-211ENST00000481999 GAS8-AS1O95177 125 aa10.86□□□□□ -0.67
CHD3-211ENST00000481999 LGALS1P09382 135 aaKnown RBP10.86□□□□□ -0.67
CHD3-211ENST00000481999 LEPP41159 167 aa10.86□□□□□ -0.67
CHD3-211ENST00000481999 TMEM97Q5BJF2 176 aa10.86□□□□□ -0.67
CHD3-211ENST00000481999 PSMG4Q5JS54 123 aa10.86□□□□□ -0.67
CHD3-211ENST00000481999 HIVEP1P15822 2718 aa10.85□□□□□ -0.67
CHD3-211ENST00000481999 Q6ZSV7 163 aa10.85□□□□□ -0.67
CHD3-211ENST00000481999 OR9G4Q8NGQ1 327 aa10.85□□□□□ -0.67
CHD3-211ENST00000481999 MYOZ3Q8TDC0 251 aa10.85□□□□□ -0.67
CHD3-211ENST00000481999 DCANP1Q8TF63 244 aa10.85□□□□□ -0.67
CHD3-211ENST00000481999 ZNF688P0C7X2 276 aa10.85□□□□□ -0.67
CHD3-211ENST00000481999 EVI2AP22794 236 aa10.85□□□□□ -0.67
CHD3-211ENST00000481999 CBY1Q9Y3M2 126 aa10.85□□□□□ -0.67
CHD3-211ENST00000481999 LENEPQ9Y5L5 61 aa10.85□□□□□ -0.67
CHD3-211ENST00000481999 NOTCH3Q9UM47 2321 aa10.84□□□□□ -0.67
CHD3-211ENST00000481999 IGKV3-20P01619 116 aa10.84□□□□□ -0.67
CHD3-211ENST00000481999 Q8N8P6 123 aa10.84□□□□□ -0.67
CHD3-211ENST00000481999 C18orf15Q96N68 181 aa10.84□□□□□ -0.67
CHD3-211ENST00000481999 CBY3A6NI87 242 aa10.84□□□□□ -0.67
CHD3-211ENST00000481999 K7EP13 123 aa10.84□□□□□ -0.67
CHD3-211ENST00000481999 SIVA1O15304 175 aa10.84□□□□□ -0.67
CHD3-211ENST00000481999 ADAMTSL5Q6ZMM2 481 aa10.84□□□□□ -0.67
CHD3-211ENST00000481999 OR2K2Q8NGT1 345 aa10.84□□□□□ -0.67
CHD3-211ENST00000481999 UBE2E2Q96LR5 201 aa10.84□□□□□ -0.67
CHD3-211ENST00000481999 IGHV4-4A0A075B6R2 117 aa10.83□□□□□ -0.68
CHD3-211ENST00000481999 A0A1W2PRX2 142 aa10.83□□□□□ -0.68
CHD3-211ENST00000481999 ELANEP08246 267 aa10.83□□□□□ -0.68
CHD3-211ENST00000481999 ZFAND2AQ8N6M9 145 aa10.83□□□□□ -0.68
CHD3-211ENST00000481999 DKK2Q9UBU2 259 aa10.83□□□□□ -0.68
CHD3-211ENST00000481999 NSD1Q96L73 2696 aaPredicted RBP10.83□□□□□ -0.68
CHD3-211ENST00000481999 GATA1P15976 413 aaPredicted RBP10.83□□□□□ -0.68
CHD3-211ENST00000481999 OR11H1Q8NG94 326 aa10.83□□□□□ -0.68
CHD3-211ENST00000481999 VWFP04275 2813 aa10.83□□□□□ -0.68
CHD3-211ENST00000481999 SPANXN1Q5VSR9 72 aa10.82□□□□□ -0.68
CHD3-211ENST00000481999 ERASQ7Z444 233 aa10.82□□□□□ -0.68
CHD3-211ENST00000481999 Q8N2B8 174 aa10.82□□□□□ -0.68
CHD3-211ENST00000481999 IGLV2-18A0A075B6J9 118 aa10.82□□□□□ -0.68
CHD3-211ENST00000481999 C7orf71A4D174 169 aa10.82□□□□□ -0.68
CHD3-211ENST00000481999 PRSS47A8MTI9 375 aa10.82□□□□□ -0.68
CHD3-211ENST00000481999 HSD52Q0P140 79 aa10.82□□□□□ -0.68
CHD3-211ENST00000481999 ODF1Q14990 250 aa10.82□□□□□ -0.68
CHD3-211ENST00000481999 TMEM158Q8WZ71 300 aa10.82□□□□□ -0.68
CHD3-211ENST00000481999 LINC00477Q96M19 166 aa10.82□□□□□ -0.68
CHD3-211ENST00000481999 UFC1Q9Y3C8 167 aa10.82□□□□□ -0.68
CHD3-211ENST00000481999 PRSS1P07477 247 aa10.81□□□□□ -0.68
CHD3-211ENST00000481999 PCP4P48539 62 aa10.81□□□□□ -0.68
CHD3-211ENST00000481999 NMUP48645 174 aa10.81□□□□□ -0.68
CHD3-211ENST00000481999 OR10J6PQ8NGY7 276 aa10.81□□□□□ -0.68
CHD3-211ENST00000481999 ZMAT4Q9H898 229 aa10.81□□□□□ -0.68
CHD3-211ENST00000481999 A6NDN8 102 aa10.81□□□□□ -0.68
CHD3-211ENST00000481999 K7EMT4 169 aa10.81□□□□□ -0.68
CHD3-211ENST00000481999 ATP5LO75964 103 aa10.81□□□□□ -0.68
CHD3-211ENST00000481999 AMMECR1LQ6DCA0 310 aa10.81□□□□□ -0.68
CHD3-211ENST00000481999 NRACQ8N912 160 aa10.81□□□□□ -0.68
CHD3-211ENST00000481999 OVOL1O14753 267 aa10.8□□□□□ -0.68
CHD3-211ENST00000481999 RNASE4P34096 147 aaKnown RBP10.8□□□□□ -0.68
CHD3-211ENST00000481999 TCTAP57738 103 aa10.8□□□□□ -0.68
CHD3-211ENST00000481999 KLHL30-AS1Q8NEE0 82 aa10.8□□□□□ -0.68
CHD3-211ENST00000481999 TENM1Q9UKZ4 2725 aa10.8□□□□□ -0.68
CHD3-211ENST00000481999 TMEM89A2RUT3 159 aa10.8□□□□□ -0.68
CHD3-211ENST00000481999 RNF152Q8N8N0 203 aa10.8□□□□□ -0.68
CHD3-211ENST00000481999 H3BVH4 76 aa10.79□□□□□ -0.68
CHD3-211ENST00000481999 LAGE3Q14657 143 aa10.79□□□□□ -0.68
CHD3-211ENST00000481999 PCP2Q8IVA1 136 aa10.79□□□□□ -0.68
CHD3-211ENST00000481999 RNASE8Q8TDE3 154 aaKnown RBP10.79□□□□□ -0.68
CHD3-211ENST00000481999 MRAP2Q96G30 205 aa10.79□□□□□ -0.68
CHD3-211ENST00000481999 TRAV12-2A0A075B6T6 113 aa10.79□□□□□ -0.68
CHD3-211ENST00000481999 SMIM17P0DL12 118 aa10.79□□□□□ -0.68
CHD3-211ENST00000481999 DLX4Q92988 240 aaPredicted RBP10.79□□□□□ -0.68
CHD3-211ENST00000481999 C2CD3Q4AC94 2353 aa10.78□□□□□ -0.68
CHD3-211ENST00000481999 TRAV26-2A0A0B4J265 109 aa10.78□□□□□ -0.68
CHD3-211ENST00000481999 TRAV21A0A0B4J279 112 aa10.78□□□□□ -0.68
CHD3-211ENST00000481999 IGKCP01834 107 aa10.78□□□□□ -0.68
CHD3-211ENST00000481999 SVIPQ8NHG7 77 aa10.78□□□□□ -0.68
CHD3-211ENST00000481999 HHLA3Q9XRX5 114 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms