RNA–Protein interactions for RNA: ENST00000334690.10

TRAPPC11-201, Transcript of trafficking protein particle complex 11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAPPC11, Length 4,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC11-201ENST00000334690 GTSF1Q8WW33 167 aa13.31□□□□□ -0.28
TRAPPC11-201ENST00000334690 HOXD3P31249 432 aaPredicted RBP13.3□□□□□ -0.28
TRAPPC11-201ENST00000334690 LAMTOR3Q9UHA4 124 aa13.3□□□□□ -0.28
TRAPPC11-201ENST00000334690 GAGE7O76087 117 aa13.3□□□□□ -0.28
TRAPPC11-201ENST00000334690 GAGE12FP0CL80 117 aa13.3□□□□□ -0.28
TRAPPC11-201ENST00000334690 GAGE12GP0CL81 117 aa13.3□□□□□ -0.28
TRAPPC11-201ENST00000334690 GAGE12IP0CL82 117 aa13.3□□□□□ -0.28
TRAPPC11-201ENST00000334690 FGF6P10767 208 aa13.3□□□□□ -0.28
TRAPPC11-201ENST00000334690 GATA1P15976 413 aaPredicted RBP13.29□□□□□ -0.28
TRAPPC11-201ENST00000334690 BRWD1-AS2P59051 145 aa13.29□□□□□ -0.28
TRAPPC11-201ENST00000334690 C16orf54Q6UWD8 224 aa13.29□□□□□ -0.28
TRAPPC11-201ENST00000334690 INAFM2P0DMQ5 153 aa13.29□□□□□ -0.28
TRAPPC11-201ENST00000334690 TRBV6-1A0A0K0K1D8 114 aa13.29□□□□□ -0.28
TRAPPC11-201ENST00000334690 PCP2Q8IVA1 136 aa13.29□□□□□ -0.28
TRAPPC11-201ENST00000334690 IGHV3-38A0A0C4DH36 116 aa13.29□□□□□ -0.28
TRAPPC11-201ENST00000334690 MSRB1Q9NZV6 116 aa13.29□□□□□ -0.28
TRAPPC11-201ENST00000334690 PLXNB1O43157 2135 aa13.28□□□□□ -0.28
TRAPPC11-201ENST00000334690 VWC2LB2RUY7 222 aa13.28□□□□□ -0.28
TRAPPC11-201ENST00000334690 HERVK_113P63121 156 aa13.28□□□□□ -0.28
TRAPPC11-201ENST00000334690 TDRG1Q3Y452 100 aa13.28□□□□□ -0.28
TRAPPC11-201ENST00000334690 MYO9AB2RTY4 2548 aa13.28□□□□□ -0.28
TRAPPC11-201ENST00000334690 C2CD3Q4AC94 2353 aa13.28□□□□□ -0.28
TRAPPC11-201ENST00000334690 Q8N7P7 452 aa13.28□□□□□ -0.28
TRAPPC11-201ENST00000334690 AJUBAQ96IF1 538 aa13.28□□□□□ -0.28
TRAPPC11-201ENST00000334690 ZNF48Q96MX3 618 aaPredicted RBP13.28□□□□□ -0.28
TRAPPC11-201ENST00000334690 ADORA2A-AS1P86434 159 aa13.28□□□□□ -0.28
TRAPPC11-201ENST00000334690 C12orf74Q32Q52 190 aa13.28□□□□□ -0.28
TRAPPC11-201ENST00000334690 CFHR3Q02985 330 aa13.27□□□□□ -0.28
TRAPPC11-201ENST00000334690 H3BMM0 161 aa13.27□□□□□ -0.28
TRAPPC11-201ENST00000334690 BLCAPP62952 87 aa13.27□□□□□ -0.28
TRAPPC11-201ENST00000334690 ZNF295-AS1Q8N0V1 137 aa13.27□□□□□ -0.28
TRAPPC11-201ENST00000334690 UBE2WQ96B02 151 aa13.27□□□□□ -0.28
TRAPPC11-201ENST00000334690 HIVEP2P31629 2446 aa13.27□□□□□ -0.28
TRAPPC11-201ENST00000334690 LINC00173Q6ZV60 143 aa13.27□□□□□ -0.29
TRAPPC11-201ENST00000334690 C5orf56Q8N8D9 126 aa13.27□□□□□ -0.29
TRAPPC11-201ENST00000334690 ADAMTS9Q9P2N4 1935 aa13.27□□□□□ -0.29
TRAPPC11-201ENST00000334690 TLN1Q9Y490 2541 aaKnown RBP13.26□□□□□ -0.29
TRAPPC11-201ENST00000334690 DAD1P61803 113 aa13.26□□□□□ -0.29
TRAPPC11-201ENST00000334690 H3BMG7 143 aa13.26□□□□□ -0.29
TRAPPC11-201ENST00000334690 CTRLP40313 264 aa13.25□□□□□ -0.29
TRAPPC11-201ENST00000334690 ANKRD39Q53RE8 183 aa13.25□□□□□ -0.29
TRAPPC11-201ENST00000334690 NAV2Q8IVL1 2488 aa13.25□□□□□ -0.29
TRAPPC11-201ENST00000334690 EP400Q96L91 3159 aa13.25□□□□□ -0.29
TRAPPC11-201ENST00000334690 IGHV4-38-2P0DP08 117 aa13.25□□□□□ -0.29
TRAPPC11-201ENST00000334690 CCDC168Q8NDH2 2452 aa13.25□□□□□ -0.29
TRAPPC11-201ENST00000334690 C10orf105Q8TEF2 133 aa13.25□□□□□ -0.29
TRAPPC11-201ENST00000334690 ZNF503Q96F45 646 aa13.25□□□□□ -0.29
TRAPPC11-201ENST00000334690 PIEZO2Q9H5I5 2752 aa13.25□□□□□ -0.29
TRAPPC11-201ENST00000334690 NAV3Q8IVL0 2385 aa13.25□□□□□ -0.29
TRAPPC11-201ENST00000334690 C19orf71A6NCJ1 209 aa13.25□□□□□ -0.29
TRAPPC11-201ENST00000334690 K7ERJ3 54 aa13.25□□□□□ -0.29
TRAPPC11-201ENST00000334690 SPANXA1Q9NS26 97 aa13.25□□□□□ -0.29
TRAPPC11-201ENST00000334690 NACAE9PAV3 2078 aa13.25□□□□□ -0.29
TRAPPC11-201ENST00000334690 WDR87Q6ZQQ6 2873 aa13.25□□□□□ -0.29
TRAPPC11-201ENST00000334690 IGHV4-30-2A0A087WSY4 118 aa13.24□□□□□ -0.29
TRAPPC11-201ENST00000334690 C9orf47Q6ZRZ4 202 aa13.24□□□□□ -0.29
TRAPPC11-201ENST00000334690 TSSC4Q9Y5U2 329 aaPredicted RBP13.24□□□□□ -0.29
TRAPPC11-201ENST00000334690 IGKV1D-37A0A075B6S9 117 aa13.24□□□□□ -0.29
TRAPPC11-201ENST00000334690 PFN2P35080 140 aa13.24□□□□□ -0.29
TRAPPC11-201ENST00000334690 DAZAP2Q15038 168 aaPredicted RBP13.24□□□□□ -0.29
TRAPPC11-201ENST00000334690 HIST1H4AP62805 103 aaKnown RBP13.24□□□□□ -0.29
TRAPPC11-201ENST00000334690 FANCD2OSQ96PS1 177 aa13.24□□□□□ -0.29
TRAPPC11-201ENST00000334690 F5H768 121 aa13.23□□□□□ -0.29
TRAPPC11-201ENST00000334690 GAGE6Q13070 117 aa13.23□□□□□ -0.29
TRAPPC11-201ENST00000334690 RNF152Q8N8N0 203 aa13.23□□□□□ -0.29
TRAPPC11-201ENST00000334690 SPAG8Q99932 426 aaPredicted RBP13.23□□□□□ -0.29
TRAPPC11-201ENST00000334690 NCOR2Q9Y618 2525 aa13.23□□□□□ -0.29
TRAPPC11-201ENST00000334690 K7EMT4 169 aa13.23□□□□□ -0.29
TRAPPC11-201ENST00000334690 GAGE2AQ6NT46 116 aa13.23□□□□□ -0.29
TRAPPC11-201ENST00000334690 PRAC2D3DTV9 90 aa13.23□□□□□ -0.29
TRAPPC11-201ENST00000334690 FRMD6-AS1P0C7T7 363 aa13.23□□□□□ -0.29
TRAPPC11-201ENST00000334690 Q8NA96 180 aa13.23□□□□□ -0.29
TRAPPC11-201ENST00000334690 AMTNQ6UX39 209 aa13.22□□□□□ -0.29
TRAPPC11-201ENST00000334690 ZFP36P26651 326 aaKnown RBP13.22□□□□□ -0.29
TRAPPC11-201ENST00000334690 RPL39LQ96EH5 51 aaKnown RBP13.22□□□□□ -0.29
TRAPPC11-201ENST00000334690 U3KQE9 123 aa13.22□□□□□ -0.29
TRAPPC11-201ENST00000334690 TNRC6AQ8NDV7 1962 aaKnown RBP13.21□□□□□ -0.29
TRAPPC11-201ENST00000334690 EIF4EBP1Q13541 118 aaPredicted RBP13.21□□□□□ -0.29
TRAPPC11-201ENST00000334690 IGF2RP11717 2491 aa13.21□□□□□ -0.29
TRAPPC11-201ENST00000334690 C10orf142B7Z368 130 aa13.21□□□□□ -0.29
TRAPPC11-201ENST00000334690 SCRT2Q9NQ03 307 aa13.21□□□□□ -0.29
TRAPPC11-201ENST00000334690 SPRY2O43597 315 aa13.21□□□□□ -0.3
TRAPPC11-201ENST00000334690 SIRPDQ9H106 197 aa13.21□□□□□ -0.3
TRAPPC11-201ENST00000334690 APOC4P55056 127 aa13.2□□□□□ -0.3
TRAPPC11-201ENST00000334690 SOCS3O14543 225 aa13.2□□□□□ -0.3
TRAPPC11-201ENST00000334690 MED14OSP0DP75 135 aa13.2□□□□□ -0.3
TRAPPC11-201ENST00000334690 SUMO4Q6EEV6 95 aa13.2□□□□□ -0.3
TRAPPC11-201ENST00000334690 TRAV13-2A0A0B4J235 113 aa13.2□□□□□ -0.3
TRAPPC11-201ENST00000334690 IGHG2P01859 326 aa13.2□□□□□ -0.3
TRAPPC11-201ENST00000334690 CFC1BP0CG36 223 aa13.2□□□□□ -0.3
TRAPPC11-201ENST00000334690 CFC1P0CG37 223 aa13.2□□□□□ -0.3
TRAPPC11-201ENST00000334690 Q6ZVH6 145 aa13.2□□□□□ -0.3
TRAPPC11-201ENST00000334690 SORL1Q92673 2214 aa13.19□□□□□ -0.3
TRAPPC11-201ENST00000334690 C3orf56Q8N813 242 aa13.19□□□□□ -0.3
TRAPPC11-201ENST00000334690 ZNF561-AS1K7EIQ3 104 aa13.19□□□□□ -0.3
TRAPPC11-201ENST00000334690 CCL24O00175 119 aa13.19□□□□□ -0.3
TRAPPC11-201ENST00000334690 ZFP2Q6ZN57 461 aa13.19□□□□□ -0.3
TRAPPC11-201ENST00000334690 GPHB5Q86YW7 130 aa13.18□□□□□ -0.3
TRAPPC11-201ENST00000334690 A0A1B0GXF2 115 aa13.18□□□□□ -0.3
TRAPPC11-201ENST00000334690 IGLV2-8P01709 118 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms