RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 CRIP1P50238 77 aa4.18□□□□□ -1.74
SYNE1-220ENST00000471834 EFNA4P52798 201 aa4.18□□□□□ -1.74
SYNE1-220ENST00000471834 VMO1Q7Z5L0 202 aa4.18□□□□□ -1.74
SYNE1-220ENST00000471834 FAM216BQ8N7L0 139 aa4.18□□□□□ -1.74
SYNE1-220ENST00000471834 OR10W1Q8NGF6 305 aa4.18□□□□□ -1.74
SYNE1-220ENST00000471834 RMI2Q96E14 147 aa4.18□□□□□ -1.74
SYNE1-220ENST00000471834 JKAMPQ9P055 326 aa4.18□□□□□ -1.74
SYNE1-220ENST00000471834 TOMM7Q9P0U1 55 aa4.18□□□□□ -1.74
SYNE1-220ENST00000471834 PKIGQ9Y2B9 76 aa4.18□□□□□ -1.74
SYNE1-220ENST00000471834 ZDBF2Q9HCK1 2354 aa4.18□□□□□ -1.74
SYNE1-220ENST00000471834 TRAV5A0A0B4J249 113 aa4.18□□□□□ -1.74
SYNE1-220ENST00000471834 RBAKDNA6NC62 111 aa4.18□□□□□ -1.74
SYNE1-220ENST00000471834 H3BRN7 92 aa4.18□□□□□ -1.74
SYNE1-220ENST00000471834 APOMO95445 188 aa4.18□□□□□ -1.74
SYNE1-220ENST00000471834 CFAP161Q6P656 301 aa4.18□□□□□ -1.74
SYNE1-220ENST00000471834 MRPL53Q96EL3 112 aaKnown RBP4.18□□□□□ -1.74
SYNE1-220ENST00000471834 AMELXQ99217 191 aa4.18□□□□□ -1.74
SYNE1-220ENST00000471834 SPTBN2O15020 2390 aa4.17□□□□□ -1.74
SYNE1-220ENST00000471834 OR11H12B2RN74 326 aa4.17□□□□□ -1.74
SYNE1-220ENST00000471834 OR11H1Q8NG94 326 aa4.17□□□□□ -1.74
SYNE1-220ENST00000471834 OR11H2Q8NH07 326 aa4.17□□□□□ -1.74
SYNE1-220ENST00000471834 TRGV2A0A075B6R0 118 aa4.17□□□□□ -1.74
SYNE1-220ENST00000471834 IGHV1-18A0A0C4DH31 117 aa4.17□□□□□ -1.74
SYNE1-220ENST00000471834 COX6CP09669 75 aa4.17□□□□□ -1.74
SYNE1-220ENST00000471834 CCL3L1P16619 93 aa4.17□□□□□ -1.74
SYNE1-220ENST00000471834 SMCPP49901 116 aaPredicted RBP4.17□□□□□ -1.74
SYNE1-220ENST00000471834 ZNF415Q09FC8 603 aa4.17□□□□□ -1.74
SYNE1-220ENST00000471834 DLX4Q92988 240 aaPredicted RBP4.17□□□□□ -1.74
SYNE1-220ENST00000471834 RNF185Q96GF1 192 aa4.17□□□□□ -1.74
SYNE1-220ENST00000471834 CITED2Q99967 270 aaPredicted RBP4.17□□□□□ -1.74
SYNE1-220ENST00000471834 H3BMG7 143 aa4.17□□□□□ -1.74
SYNE1-220ENST00000471834 IGKV1-16P04430 117 aa4.17□□□□□ -1.74
SYNE1-220ENST00000471834 MED14OSP0DP75 135 aa4.17□□□□□ -1.74
SYNE1-220ENST00000471834 C10orf126Q8N4M7 172 aa4.17□□□□□ -1.74
SYNE1-220ENST00000471834 NHLRC4P0CG21 123 aaPredicted RBP4.17□□□□□ -1.74
SYNE1-220ENST00000471834 PYYP10082 97 aa4.17□□□□□ -1.74
SYNE1-220ENST00000471834 SEM1Q6ZVN7 128 aa4.17□□□□□ -1.74
SYNE1-220ENST00000471834 LY6G5BQ8NDX9 201 aa4.17□□□□□ -1.74
SYNE1-220ENST00000471834 A0A1W2PPI3 338 aa4.17□□□□□ -1.74
SYNE1-220ENST00000471834 KIR2DL4Q99706 377 aa4.17□□□□□ -1.74
SYNE1-220ENST00000471834 DYSFO75923 2080 aa4.17□□□□□ -1.74
SYNE1-220ENST00000471834 SDK2Q58EX2 2172 aa4.17□□□□□ -1.74
SYNE1-220ENST00000471834 TRAV2A0A0B4J234 112 aa4.16□□□□□ -1.74
SYNE1-220ENST00000471834 IGLL5B9A064 214 aa4.16□□□□□ -1.74
SYNE1-220ENST00000471834 E7EUB6 86 aa4.16□□□□□ -1.74
SYNE1-220ENST00000471834 HBDP02042 147 aa4.16□□□□□ -1.74
SYNE1-220ENST00000471834 MRPL23Q16540 153 aaKnown RBP4.16□□□□□ -1.74
SYNE1-220ENST00000471834 TMEM219Q86XT9 240 aa4.16□□□□□ -1.74
SYNE1-220ENST00000471834 NAV3Q8IVL0 2385 aa4.16□□□□□ -1.74
SYNE1-220ENST00000471834 NCR2O95944 276 aa4.16□□□□□ -1.74
SYNE1-220ENST00000471834 LINC00479Q96M42 142 aa4.16□□□□□ -1.74
SYNE1-220ENST00000471834 PLCE1Q9P212 2302 aa4.16□□□□□ -1.74
SYNE1-220ENST00000471834 TRBV25-1A0A075B6N4 114 aa4.16□□□□□ -1.74
SYNE1-220ENST00000471834 COPS9Q8WXC6 57 aa4.16□□□□□ -1.74
SYNE1-220ENST00000471834 LINC00527Q9UJ94 153 aa4.16□□□□□ -1.74
SYNE1-220ENST00000471834 UNC13CQ8NB66 2214 aa4.16□□□□□ -1.74
SYNE1-220ENST00000471834 APOC4P55056 127 aa4.16□□□□□ -1.74
SYNE1-220ENST00000471834 K7EIM0 57 aa4.16□□□□□ -1.74
SYNE1-220ENST00000471834 DEFB113Q30KQ7 82 aa4.16□□□□□ -1.74
SYNE1-220ENST00000471834 TIMM23BQ5SRD1 257 aa4.16□□□□□ -1.74
SYNE1-220ENST00000471834 ZNF491Q8N8L2 437 aa4.16□□□□□ -1.74
SYNE1-220ENST00000471834 CFHR4Q92496 578 aa4.16□□□□□ -1.74
SYNE1-220ENST00000471834 TLN1Q9Y490 2541 aaKnown RBP4.16□□□□□ -1.74
SYNE1-220ENST00000471834 DNAL4O96015 105 aa4.16□□□□□ -1.74
SYNE1-220ENST00000471834 MYOD1P15172 320 aa4.16□□□□□ -1.74
SYNE1-220ENST00000471834 GATA3P23771 443 aa4.16□□□□□ -1.74
SYNE1-220ENST00000471834 PLA2G2CQ5R387 149 aa4.16□□□□□ -1.74
SYNE1-220ENST00000471834 SHISA2Q6UWI4 295 aa4.16□□□□□ -1.74
SYNE1-220ENST00000471834 PCNTO95613 3336 aa4.15□□□□□ -1.74
SYNE1-220ENST00000471834 ZNF292O60281 2723 aa4.15□□□□□ -1.74
SYNE1-220ENST00000471834 IGKV2D-26A0A0A0MRZ7 120 aa4.15□□□□□ -1.74
SYNE1-220ENST00000471834 TRAV8-4A0A0B4J246 113 aa4.15□□□□□ -1.74
SYNE1-220ENST00000471834 TRAV21A0A0B4J279 112 aa4.15□□□□□ -1.74
SYNE1-220ENST00000471834 RPL35AP18077 110 aaKnown RBP4.15□□□□□ -1.74
SYNE1-220ENST00000471834 LOXP28300 417 aaPredicted RBP4.15□□□□□ -1.74
SYNE1-220ENST00000471834 LINC00205P59089 165 aa4.15□□□□□ -1.74
SYNE1-220ENST00000471834 NDPQ00604 133 aa4.15□□□□□ -1.74
SYNE1-220ENST00000471834 ASPHD1Q5U4P2 390 aa4.15□□□□□ -1.74
SYNE1-220ENST00000471834 KIF25-AS1Q9Y6Z4 181 aa4.15□□□□□ -1.74
SYNE1-220ENST00000471834 TEX48A0A1B0GUV7 120 aa4.15□□□□□ -1.74
SYNE1-220ENST00000471834 FAM240AA0A1B0GVK7 77 aa4.15□□□□□ -1.74
SYNE1-220ENST00000471834 LOXL1Q08397 574 aaPredicted RBP4.15□□□□□ -1.74
SYNE1-220ENST00000471834 IGFL4Q6B9Z1 124 aa4.15□□□□□ -1.74
SYNE1-220ENST00000471834 MED12LQ86YW9 2145 aa4.15□□□□□ -1.74
SYNE1-220ENST00000471834 IFI27L1Q96BM0 104 aa4.15□□□□□ -1.75
SYNE1-220ENST00000471834 NXT2Q9NPJ8 142 aaKnown RBP4.15□□□□□ -1.75
SYNE1-220ENST00000471834 ANKRD11Q6UB99 2663 aaPredicted RBP4.15□□□□□ -1.75
SYNE1-220ENST00000471834 TRAV26-2A0A0B4J265 109 aa4.15□□□□□ -1.75
SYNE1-220ENST00000471834 C1orf122Q6ZSJ8 110 aa4.15□□□□□ -1.75
SYNE1-220ENST00000471834 TTC28Q96AY4 2481 aa4.15□□□□□ -1.75
SYNE1-220ENST00000471834 A0A0J9YX75 114 aa4.15□□□□□ -1.75
SYNE1-220ENST00000471834 TMEM200BQ69YZ2 307 aa4.15□□□□□ -1.75
SYNE1-220ENST00000471834 EXOC3-AS1Q8N2X6 119 aa4.15□□□□□ -1.75
SYNE1-220ENST00000471834 FAM19A4Q96LR4 140 aa4.15□□□□□ -1.75
SYNE1-220ENST00000471834 FREM1Q5H8C1 2179 aa4.14□□□□□ -1.75
SYNE1-220ENST00000471834 IGHV1-69DA0A0B4J2H0 117 aa4.14□□□□□ -1.75
SYNE1-220ENST00000471834 LINC00315P59091 139 aa4.14□□□□□ -1.75
SYNE1-220ENST00000471834 RBMY1BA6NDE4 496 aaKnown RBP4.14□□□□□ -1.75
SYNE1-220ENST00000471834 RBMY1EA6NEQ0 496 aaKnown RBP4.14□□□□□ -1.75
SYNE1-220ENST00000471834 RBMY1DP0C7P1 496 aaKnown RBP4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms