RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 A0A087WX48 190 aa16.29■□□□□ 0.2
UPF3A-202ENST00000375299 NBL1P41271 181 aa16.29■□□□□ 0.2
UPF3A-202ENST00000375299 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa16.29■□□□□ 0.2
UPF3A-202ENST00000375299 ARHGAP32A7KAX9 2087 aa16.29■□□□□ 0.2
UPF3A-202ENST00000375299 POLEQ07864 2286 aa16.29■□□□□ 0.2
UPF3A-202ENST00000375299 C12orf74Q32Q52 190 aa16.29■□□□□ 0.2
UPF3A-202ENST00000375299 SPANXB1Q9NS25 103 aaPredicted RBP16.29■□□□□ 0.2
UPF3A-202ENST00000375299 M0R1W7 72 aa16.28■□□□□ 0.2
UPF3A-202ENST00000375299 Q8N6K4 173 aa16.28■□□□□ 0.2
UPF3A-202ENST00000375299 SLC50A1Q9BRV3 221 aa16.28■□□□□ 0.2
UPF3A-202ENST00000375299 CIDEAO60543 219 aa16.28■□□□□ 0.2
UPF3A-202ENST00000375299 VKORC1Q9BQB6 163 aa16.28■□□□□ 0.2
UPF3A-202ENST00000375299 IGHV7-4-1A0A0J9YVY3 117 aa16.27■□□□□ 0.2
UPF3A-202ENST00000375299 BUB3O43684 328 aa16.27■□□□□ 0.2
UPF3A-202ENST00000375299 SCGB1A1P11684 91 aa16.27■□□□□ 0.2
UPF3A-202ENST00000375299 PRTN3P24158 256 aa16.27■□□□□ 0.2
UPF3A-202ENST00000375299 RAB9AP51151 201 aa16.27■□□□□ 0.2
UPF3A-202ENST00000375299 WFDC2Q14508 124 aa16.27■□□□□ 0.2
UPF3A-202ENST00000375299 ZFAND3Q9H8U3 227 aa16.27■□□□□ 0.2
UPF3A-202ENST00000375299 TRAV26-2A0A0B4J265 109 aa16.27■□□□□ 0.19
UPF3A-202ENST00000375299 AZU1P20160 251 aa16.27■□□□□ 0.19
UPF3A-202ENST00000375299 SIGMAR1Q99720 223 aa16.27■□□□□ 0.19
UPF3A-202ENST00000375299 AGPAT4-IT1Q9H0P7 198 aa16.27■□□□□ 0.19
UPF3A-202ENST00000375299 PLNP26678 52 aa16.26■□□□□ 0.19
UPF3A-202ENST00000375299 CCDC144NLQ6NUI1 221 aa16.26■□□□□ 0.19
UPF3A-202ENST00000375299 LINC01560Q8TB33 94 aa16.26■□□□□ 0.19
UPF3A-202ENST00000375299 GTSF1LQ9H1H1 148 aa16.26■□□□□ 0.19
UPF3A-202ENST00000375299 UFC1Q9Y3C8 167 aa16.26■□□□□ 0.19
UPF3A-202ENST00000375299 TSSC4Q9Y5U2 329 aaPredicted RBP16.26■□□□□ 0.19
UPF3A-202ENST00000375299 IGHV7-81A0A0B4J1V7 117 aa16.25■□□□□ 0.19
UPF3A-202ENST00000375299 J3QR89 54 aa16.25■□□□□ 0.19
UPF3A-202ENST00000375299 HIST1H4GQ99525 98 aa16.25■□□□□ 0.19
UPF3A-202ENST00000375299 TACC2O95359 2948 aa16.25■□□□□ 0.19
UPF3A-202ENST00000375299 TPRP12270 2363 aaKnown RBP16.25■□□□□ 0.19
UPF3A-202ENST00000375299 EFNA4P52798 201 aa16.24■□□□□ 0.19
UPF3A-202ENST00000375299 CD300EQ496F6 205 aaPredicted RBP16.24■□□□□ 0.19
UPF3A-202ENST00000375299 ZNF502Q8TBZ5 544 aa16.24■□□□□ 0.19
UPF3A-202ENST00000375299 H3BMG7 143 aa16.24■□□□□ 0.19
UPF3A-202ENST00000375299 TMEM11P17152 192 aa16.24■□□□□ 0.19
UPF3A-202ENST00000375299 AGRNO00468 2067 aa16.24■□□□□ 0.19
UPF3A-202ENST00000375299 SPTBN2O15020 2390 aa16.24■□□□□ 0.19
UPF3A-202ENST00000375299 TRBV7-3A0A075B6L6 115 aa16.23■□□□□ 0.19
UPF3A-202ENST00000375299 GAGE12HA6NDE8 117 aa16.23■□□□□ 0.19
UPF3A-202ENST00000375299 LY6HO94772 140 aa16.23■□□□□ 0.19
UPF3A-202ENST00000375299 EBI3Q14213 229 aa16.23■□□□□ 0.19
UPF3A-202ENST00000375299 TMEM78Q5T7P6 136 aa16.23■□□□□ 0.19
UPF3A-202ENST00000375299 VMO1Q7Z5L0 202 aa16.23■□□□□ 0.19
UPF3A-202ENST00000375299 IGHV3-66A0A0C4DH42 116 aa16.23■□□□□ 0.19
UPF3A-202ENST00000375299 K7ENP7 123 aa16.23■□□□□ 0.19
UPF3A-202ENST00000375299 IGHV4-4A0A075B6R2 117 aa16.22■□□□□ 0.19
UPF3A-202ENST00000375299 TRAV12-1A0A0B4J245 112 aa16.22■□□□□ 0.19
UPF3A-202ENST00000375299 LINC01619G3V211 115 aa16.22■□□□□ 0.19
UPF3A-202ENST00000375299 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP16.22■□□□□ 0.19
UPF3A-202ENST00000375299 GOSR1O95249 250 aa16.22■□□□□ 0.19
UPF3A-202ENST00000375299 RRN3P1Q2M238 152 aa16.22■□□□□ 0.19
UPF3A-202ENST00000375299 C15orf32Q32M92 178 aa16.22■□□□□ 0.19
UPF3A-202ENST00000375299 F8VRH5 84 aa16.22■□□□□ 0.19
UPF3A-202ENST00000375299 SPANXN1Q5VSR9 72 aa16.22■□□□□ 0.19
UPF3A-202ENST00000375299 FAM110DQ8TAY7 271 aaPredicted RBP16.22■□□□□ 0.19
UPF3A-202ENST00000375299 TIMD4Q96H15 378 aa16.22■□□□□ 0.19
UPF3A-202ENST00000375299 OOSP1A8MZH6 123 aa16.21■□□□□ 0.19
UPF3A-202ENST00000375299 H7C1H1 209 aa16.21■□□□□ 0.19
UPF3A-202ENST00000375299 ZNF207O43670 478 aaKnown RBP16.21■□□□□ 0.19
UPF3A-202ENST00000375299 SMAGPQ0VAQ4 97 aa16.21■□□□□ 0.19
UPF3A-202ENST00000375299 FOXC1Q12948 553 aa16.21■□□□□ 0.19
UPF3A-202ENST00000375299 TRAV8-2A0A0B4J237 113 aa16.21■□□□□ 0.19
UPF3A-202ENST00000375299 GRNP28799 593 aaKnown RBP16.21■□□□□ 0.19
UPF3A-202ENST00000375299 SPATA25Q9BR10 227 aa16.21■□□□□ 0.19
UPF3A-202ENST00000375299 LRBAP50851 2863 aa16.21■□□□□ 0.18
UPF3A-202ENST00000375299 A0A1B0GWB2 263 aa16.2■□□□□ 0.18
UPF3A-202ENST00000375299 CLPSL1A2RUU4 121 aa16.2■□□□□ 0.18
UPF3A-202ENST00000375299 CLEC3BP05452 202 aa16.2■□□□□ 0.18
UPF3A-202ENST00000375299 ETDBQ3ZM63 59 aa16.2■□□□□ 0.18
UPF3A-202ENST00000375299 AMTNQ6UX39 209 aa16.2■□□□□ 0.18
UPF3A-202ENST00000375299 SH2D6Q7Z4S9 175 aa16.2■□□□□ 0.18
UPF3A-202ENST00000375299 MRPL53Q96EL3 112 aaKnown RBP16.2■□□□□ 0.18
UPF3A-202ENST00000375299 SMIM2Q9BVW6 85 aa16.2■□□□□ 0.18
UPF3A-202ENST00000375299 MUC6Q6W4X9 2439 aa16.2■□□□□ 0.18
UPF3A-202ENST00000375299 DCHS2Q6V1P9 2916 aa16.2■□□□□ 0.18
UPF3A-202ENST00000375299 FAM90A27PA6NNH2 459 aa16.2■□□□□ 0.18
UPF3A-202ENST00000375299 GAGE13Q4V321 117 aa16.2■□□□□ 0.18
UPF3A-202ENST00000375299 Q8N9W7 124 aa16.2■□□□□ 0.18
UPF3A-202ENST00000375299 MRAP2Q96G30 205 aa16.2■□□□□ 0.18
UPF3A-202ENST00000375299 SPAG8Q99932 426 aaPredicted RBP16.2■□□□□ 0.18
UPF3A-202ENST00000375299 MYMXA0A1B0GTQ4 84 aa16.19■□□□□ 0.18
UPF3A-202ENST00000375299 TLN1Q9Y490 2541 aaKnown RBP16.19■□□□□ 0.18
UPF3A-202ENST00000375299 IGHV3OR16-13A0A075B7E8 117 aa16.19■□□□□ 0.18
UPF3A-202ENST00000375299 IGHV3-74A0A0B4J1X5 117 aa16.19■□□□□ 0.18
UPF3A-202ENST00000375299 OR11H12B2RN74 326 aa16.19■□□□□ 0.18
UPF3A-202ENST00000375299 OR11H1Q8NG94 326 aa16.19■□□□□ 0.18
UPF3A-202ENST00000375299 OR11H2Q8NH07 326 aa16.19■□□□□ 0.18
UPF3A-202ENST00000375299 HIF1ANQ9NWT6 349 aa16.19■□□□□ 0.18
UPF3A-202ENST00000375299 PRO0461Q9UI25 63 aa16.19■□□□□ 0.18
UPF3A-202ENST00000375299 CSMD1Q96PZ7 3565 aa16.18■□□□□ 0.18
UPF3A-202ENST00000375299 ECSCRQ19T08 205 aa16.18■□□□□ 0.18
UPF3A-202ENST00000375299 MINOS1Q5TGZ0 78 aa16.18■□□□□ 0.18
UPF3A-202ENST00000375299 C9orf47Q6ZRZ4 202 aa16.18■□□□□ 0.18
UPF3A-202ENST00000375299 MINOS1-NBL1R4GNA1 71 aa16.18■□□□□ 0.18
UPF3A-202ENST00000375299 Q6ZQT7 251 aa16.18■□□□□ 0.18
UPF3A-202ENST00000375299 MSRB2Q9Y3D2 182 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms