RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Emp2O88662 172 aa13.18□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Slc35b1P97858 322 aa13.18□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Cd200r3Q5UKY4 296 aa13.18□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Ptrh2Q8R2Y8 181 aaKnown RBP13.18□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Wipi1Q8R3E3 446 aa13.18□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Bles03Q8VD62 251 aa13.18□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Srp19Q9D7A6 144 aa13.18□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 H60bB1B212 251 aa13.18□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Olfr556E9Q549 324 aa13.18□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Olfr530Q8VFE8 307 aa13.18□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Trav17A0A075B655 113 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Olfr912A0A1L1SSS5 310 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Mpig6bD7PDD4 242 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 RprmQ9JJ72 109 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Olfr1116E9PXB8 307 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 P01796 113 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 P01797 113 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 P01799 113 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 P06323 132 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Col8a1Q00780 744 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Sft2d3Q9CSV6 209 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Chst5Q9QUP4 395 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Slurp1Q9Z0K7 110 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Gm21789J3QMZ1 123 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Gm21870J3QPN2 123 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Gm21883J3QPV3 123 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Tpsb2P21845 276 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Zfp36P22893 319 aaKnown RBP13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Coq2Q66JT7 374 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Vmn1r235Q8R297 328 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 NmbQ9CR53 121 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Ncor1Q60974 2453 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Tmem262D3Z338 116 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Brs3O54798 399 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Ssty1P13675 232 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Defa9P50707 93 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 CortP56469 109 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Smim8Q9CQQ0 97 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Atp23Q9CWQ3 201 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Ap5s1Q9D742 170 aa13.17□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Ighv5-4A0A075B5P9 117 aa13.16□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Gm12728V9GX31 77 aa13.16□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Col6a6Q8C6K9 2265 aa13.16□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Olfr1328B1ARV2 313 aa13.16□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Cd3eP22646 189 aa13.16□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Supt4h1aP63271 117 aa13.16□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Gm11110Q3U4K9 109 aa13.16□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Olfr924Q7TRB8 308 aa13.16□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Igkv14-126A0A075B5K0 117 aa13.16□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Olfr191L7N1Z8 309 aa13.16□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Hoxd11P23813 323 aa13.16□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Tm2d3Q8BJ83 261 aa13.16□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Olfr972Q9EQA2 314 aa13.16□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Slc25a20Q9Z2Z6 301 aaKnown RBP13.16□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Gm6993A0A1W2P738 69 aa13.15□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 A930017K11RikE0CXQ2 571 aa13.15□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Gm5426J3QNM7 103 aa13.15□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Ldlrad2Q3V0V0 142 aa13.15□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Olfr411Q7TRW8 315 aa13.15□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Olfr1259Q8VEZ1 309 aa13.15□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Nkg7Q99PA5 165 aa13.15□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Igkv4-63A0A0G2JFU6 117 aa13.15□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 D830044I16RikA0A1D5RM53 117 aa13.15□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Irf2bp2E9Q1P8 570 aa13.15□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 PtcraP0C6B2 199 aa13.15□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Q5BN45 167 aa13.15□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Olfr195Q8VGQ6 308 aa13.15□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Sdf2l1Q9ESP1 221 aa13.15□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Q80X32 188 aaKnown RBP13.15□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 CrhQ8CIT0 187 aa13.15□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Olfr1183Q8VFF8 303 aa13.15□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Zfpl1Q9DB43 310 aa13.15□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 PdfS4R2K0 231 aa13.15□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Mpv17P19258 176 aa13.15□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 Ccl11P48298 97 aa13.15□□□□□ -0.3
Ccdc88b-201ENSMUST00000113440 4931422A03RikA2BHN9 113 aa13.14□□□□□ -0.31
Ccdc88b-201ENSMUST00000113440 Fam240aJ3QNP9 97 aa13.14□□□□□ -0.31
Ccdc88b-201ENSMUST00000113440 S100a8P27005 89 aa13.14□□□□□ -0.31
Ccdc88b-201ENSMUST00000113440 Dnajc30P59041 219 aa13.14□□□□□ -0.31
Ccdc88b-201ENSMUST00000113440 DdtO35215 118 aa13.14□□□□□ -0.31
Ccdc88b-201ENSMUST00000113440 Olfr143P34985 313 aa13.14□□□□□ -0.31
Ccdc88b-201ENSMUST00000113440 Defa22Q8C1N8 93 aa13.14□□□□□ -0.31
Ccdc88b-201ENSMUST00000113440 Klk15Q8CGR4 254 aa13.14□□□□□ -0.31
Ccdc88b-201ENSMUST00000113440 Cma2Q91VB1 246 aa13.14□□□□□ -0.31
Ccdc88b-201ENSMUST00000113440 Ufc1Q9CR09 167 aa13.14□□□□□ -0.31
Ccdc88b-201ENSMUST00000113440 3100002H09RikQ9CXW6 140 aa13.14□□□□□ -0.31
Ccdc88b-201ENSMUST00000113440 Xlr5cQ9JJR2 179 aa13.14□□□□□ -0.31
Ccdc88b-201ENSMUST00000113440 Prss32E9Q409 334 aa13.14□□□□□ -0.31
Ccdc88b-201ENSMUST00000113440 BokO35425 213 aa13.14□□□□□ -0.31
Ccdc88b-201ENSMUST00000113440 Khdc1bP0C7A0 126 aa13.14□□□□□ -0.31
Ccdc88b-201ENSMUST00000113440 Slc17a2Q5SZA1 478 aa13.14□□□□□ -0.31
Ccdc88b-201ENSMUST00000113440 Rgs13Q8K443 158 aa13.14□□□□□ -0.31
Ccdc88b-201ENSMUST00000113440 Gm44501A8R0T9 150 aa13.14□□□□□ -0.31
Ccdc88b-201ENSMUST00000113440 Cd209gD3Z5D4 194 aa13.14□□□□□ -0.31
Ccdc88b-201ENSMUST00000113440 Smim9Q3V0X1 137 aa13.14□□□□□ -0.31
Ccdc88b-201ENSMUST00000113440 Ccsmst1Q6RUT7 136 aa13.14□□□□□ -0.31
Ccdc88b-201ENSMUST00000113440 Rbm14Q8C2Q3 669 aaKnown RBP13.14□□□□□ -0.31
Ccdc88b-201ENSMUST00000113440 Stxbp6Q8R3T5 210 aa13.14□□□□□ -0.31
Ccdc88b-201ENSMUST00000113440 Znrf1Q91V17 227 aa13.14□□□□□ -0.31
Ccdc88b-201ENSMUST00000113440 Ubtd1Q91WB7 227 aa13.14□□□□□ -0.31
Retrieved 100 of 22,080 RNA–protein pairs in 108.6 ms