Protein–RNA interactions for Protein: P0C6B2

Ptcra, Pre T-cell antigen receptor alpha, mousemouse

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PtcraP0C6B2 Gm25239-201ENSMUST00000174915 86 ntBASIC32.15■■■□□ 2.74
PtcraP0C6B2 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
PtcraP0C6B2 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
PtcraP0C6B2 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
PtcraP0C6B2 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
PtcraP0C6B2 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC28.83■■■□□ 2.2
PtcraP0C6B2 Gm15042-201ENSMUST00000120212 883 ntBASIC28.58■■■□□ 2.17
PtcraP0C6B2 Gm15045-201ENSMUST00000117359 883 ntBASIC28■■■□□ 2.07
PtcraP0C6B2 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
PtcraP0C6B2 Gm24109-201ENSMUST00000175489 103 ntBASIC27.66■■■□□ 2.02
PtcraP0C6B2 Psd-208ENSMUST00000224556 2034 ntBASIC27.6■■■□□ 2.01
PtcraP0C6B2 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
PtcraP0C6B2 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC27.34■■□□□ 1.97
PtcraP0C6B2 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
PtcraP0C6B2 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC27.26■■□□□ 1.95
PtcraP0C6B2 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC27.14■■□□□ 1.94
PtcraP0C6B2 Gm23366-201ENSMUST00000175022 89 ntBASIC26.97■■□□□ 1.91
PtcraP0C6B2 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
PtcraP0C6B2 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC26.87■■□□□ 1.89
PtcraP0C6B2 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
PtcraP0C6B2 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
PtcraP0C6B2 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
PtcraP0C6B2 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC26.77■■□□□ 1.88
PtcraP0C6B2 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
PtcraP0C6B2 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC26.7■■□□□ 1.87
PtcraP0C6B2 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC26.64■■□□□ 1.86
PtcraP0C6B2 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
PtcraP0C6B2 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
PtcraP0C6B2 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
PtcraP0C6B2 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
PtcraP0C6B2 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC26.37■■□□□ 1.81
PtcraP0C6B2 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
PtcraP0C6B2 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
PtcraP0C6B2 AC153911.1-202ENSMUST00000218534 1034 ntBASIC26.17■■□□□ 1.78
PtcraP0C6B2 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
PtcraP0C6B2 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
PtcraP0C6B2 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
PtcraP0C6B2 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC25.96■■□□□ 1.75
PtcraP0C6B2 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC25.85■■□□□ 1.73
PtcraP0C6B2 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
PtcraP0C6B2 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
PtcraP0C6B2 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
PtcraP0C6B2 Gm10524-201ENSMUST00000181931 1893 ntBASIC25.57■■□□□ 1.68
PtcraP0C6B2 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
PtcraP0C6B2 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC25.53■■□□□ 1.68
PtcraP0C6B2 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
PtcraP0C6B2 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC25.5■■□□□ 1.67
PtcraP0C6B2 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
PtcraP0C6B2 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
PtcraP0C6B2 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
PtcraP0C6B2 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
PtcraP0C6B2 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
PtcraP0C6B2 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PtcraP0C6B2 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
PtcraP0C6B2 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC25.27■■□□□ 1.64
PtcraP0C6B2 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
PtcraP0C6B2 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC25.23■■□□□ 1.63
PtcraP0C6B2 Gm25238-201ENSMUST00000174914 89 ntBASIC25.22■■□□□ 1.63
PtcraP0C6B2 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
PtcraP0C6B2 Gm27325-201ENSMUST00000175467 74 ntBASIC25.14■■□□□ 1.62
PtcraP0C6B2 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
PtcraP0C6B2 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
PtcraP0C6B2 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC25.09■■□□□ 1.61
PtcraP0C6B2 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC25.06■■□□□ 1.6
PtcraP0C6B2 CT025624.2-201ENSMUST00000223609 1909 ntBASIC25.04■■□□□ 1.6
PtcraP0C6B2 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC25.03■■□□□ 1.6
PtcraP0C6B2 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
PtcraP0C6B2 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
PtcraP0C6B2 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC24.97■■□□□ 1.59
PtcraP0C6B2 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC24.92■■□□□ 1.58
PtcraP0C6B2 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC24.91■■□□□ 1.58
PtcraP0C6B2 Gm42596-201ENSMUST00000196305 1958 ntBASIC24.91■■□□□ 1.58
PtcraP0C6B2 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
PtcraP0C6B2 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC24.89■■□□□ 1.58
PtcraP0C6B2 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
PtcraP0C6B2 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC24.67■■□□□ 1.54
PtcraP0C6B2 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC24.62■■□□□ 1.53
PtcraP0C6B2 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
PtcraP0C6B2 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
PtcraP0C6B2 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
PtcraP0C6B2 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC24.58■■□□□ 1.53
PtcraP0C6B2 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
PtcraP0C6B2 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
PtcraP0C6B2 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
PtcraP0C6B2 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
PtcraP0C6B2 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
PtcraP0C6B2 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
PtcraP0C6B2 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
PtcraP0C6B2 Rab21-202ENSMUST00000218831 843 ntBASIC24.4■■□□□ 1.5
PtcraP0C6B2 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC24.38■■□□□ 1.49
PtcraP0C6B2 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
PtcraP0C6B2 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
PtcraP0C6B2 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
PtcraP0C6B2 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PtcraP0C6B2 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC24.29■■□□□ 1.48
PtcraP0C6B2 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
PtcraP0C6B2 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
PtcraP0C6B2 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC24.26■■□□□ 1.47
PtcraP0C6B2 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
PtcraP0C6B2 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms