RNA–Protein interactions for RNA: ENST00000497984.5

SMC4-227, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-227ENST00000497984 HYLS1Q96M11 299 aa-0.01□□□□□ -2.41
SMC4-227ENST00000497984 C9orf16Q9BUW7 83 aa-0.01□□□□□ -2.41
SMC4-227ENST00000497984 OPTCQ9UBM4 332 aa-0.01□□□□□ -2.41
SMC4-227ENST00000497984 HIVEP3Q5T1R4 2406 aa-0.01□□□□□ -2.41
SMC4-227ENST00000497984 TNRC6AQ8NDV7 1962 aaKnown RBP-0.01□□□□□ -2.41
SMC4-227ENST00000497984 CEP164Q9UPV0 1460 aa-0.02□□□□□ -2.41
SMC4-227ENST00000497984 HERC1Q15751 4861 aa-0.02□□□□□ -2.41
SMC4-227ENST00000497984 C9orf170A2RU37 121 aa-0.02□□□□□ -2.41
SMC4-227ENST00000497984 ZNF727A8MUV8 499 aa-0.02□□□□□ -2.41
SMC4-227ENST00000497984 BANF1O75531 89 aa-0.02□□□□□ -2.41
SMC4-227ENST00000497984 KDELR1P24390 212 aa-0.02□□□□□ -2.41
SMC4-227ENST00000497984 HSPE1P61604 102 aaKnown RBP-0.02□□□□□ -2.41
SMC4-227ENST00000497984 S100A7AQ86SG5 101 aa-0.02□□□□□ -2.41
SMC4-227ENST00000497984 OR4K15Q8NH41 348 aa-0.02□□□□□ -2.41
SMC4-227ENST00000497984 POPDC3Q9HBV1 291 aa-0.02□□□□□ -2.41
SMC4-227ENST00000497984 ASB4Q9Y574 426 aa-0.02□□□□□ -2.41
SMC4-227ENST00000497984 ABCA13Q86UQ4 5058 aa-0.02□□□□□ -2.41
SMC4-227ENST00000497984 SYNE1Q8NF91 8797 aaKnown RBP-0.02□□□□□ -2.41
SMC4-227ENST00000497984 TENM4Q6N022 2769 aa-0.02□□□□□ -2.41
SMC4-227ENST00000497984 PCF11O94913 1555 aaKnown RBP-0.02□□□□□ -2.41
SMC4-227ENST00000497984 TEP1Q99973 2627 aaKnown RBP-0.02□□□□□ -2.41
SMC4-227ENST00000497984 CHD8Q9HCK8 2581 aa-0.02□□□□□ -2.41
SMC4-227ENST00000497984 FAT3Q8TDW7 4589 aa-0.03□□□□□ -2.41
SMC4-227ENST00000497984 RIF1Q5UIP0 2472 aaKnown RBP-0.03□□□□□ -2.41
SMC4-227ENST00000497984 OTOGQ6ZRI0 2925 aa-0.03□□□□□ -2.41
SMC4-227ENST00000497984 FLNAP21333 2647 aaKnown RBP-0.03□□□□□ -2.41
SMC4-227ENST00000497984 MED12Q93074 2177 aa-0.03□□□□□ -2.41
SMC4-227ENST00000497984 SERPINA1P01009 418 aa-0.03□□□□□ -2.41
SMC4-227ENST00000497984 CXCL1P09341 107 aa-0.03□□□□□ -2.41
SMC4-227ENST00000497984 ARPP19P56211 112 aa-0.03□□□□□ -2.41
SMC4-227ENST00000497984 NCALDP61601 193 aa-0.03□□□□□ -2.41
SMC4-227ENST00000497984 PLAC4Q8WY50 150 aa-0.03□□□□□ -2.41
SMC4-227ENST00000497984 DGCR14Q96DF8 476 aaKnown RBP-0.03□□□□□ -2.41
SMC4-227ENST00000497984 ZHX1-C8orf76Q96EF9 292 aa-0.03□□□□□ -2.41
SMC4-227ENST00000497984 LIMD2Q9BT23 127 aa-0.03□□□□□ -2.41
SMC4-227ENST00000497984 ARMC1Q9NVT9 282 aa-0.03□□□□□ -2.41
SMC4-227ENST00000497984 JPT1Q9UK76 154 aa-0.03□□□□□ -2.41
SMC4-227ENST00000497984 COL7A1Q02388 2944 aa-0.03□□□□□ -2.41
SMC4-227ENST00000497984 PDZD2O15018 2839 aa-0.03□□□□□ -2.41
SMC4-227ENST00000497984 ZANQ9Y493 2812 aa-0.03□□□□□ -2.41
SMC4-227ENST00000497984 HYDINQ4G0P3 5121 aa-0.03□□□□□ -2.41
SMC4-227ENST00000497984 POLQO75417 2590 aa-0.03□□□□□ -2.41
SMC4-227ENST00000497984 SETD2Q9BYW2 2564 aaPredicted RBP-0.03□□□□□ -2.41
SMC4-227ENST00000497984 MIA2Q96PC5 1412 aa-0.04□□□□□ -2.42
SMC4-227ENST00000497984 ERBINQ96RT1 1412 aa-0.04□□□□□ -2.42
SMC4-227ENST00000497984 COL12A1Q99715 3063 aa-0.04□□□□□ -2.42
SMC4-227ENST00000497984 KIAA1549Q9HCM3 1950 aa-0.04□□□□□ -2.42
SMC4-227ENST00000497984 hDV103S1A0JD37 113 aa-0.04□□□□□ -2.42
SMC4-227ENST00000497984 K7ERJ3 54 aa-0.04□□□□□ -2.42
SMC4-227ENST00000497984 CCL4P13236 92 aa-0.04□□□□□ -2.42
SMC4-227ENST00000497984 KLRD1Q13241 179 aa-0.04□□□□□ -2.42
SMC4-227ENST00000497984 AKIRIN2Q53H80 203 aa-0.04□□□□□ -2.42
SMC4-227ENST00000497984 OCIAD2Q56VL3 154 aa-0.04□□□□□ -2.42
SMC4-227ENST00000497984 Q6ZQY7 126 aa-0.04□□□□□ -2.42
SMC4-227ENST00000497984 Q86TA4 180 aa-0.04□□□□□ -2.42
SMC4-227ENST00000497984 LRRC18Q8N456 261 aa-0.04□□□□□ -2.42
SMC4-227ENST00000497984 PPTC7Q8NI37 304 aa-0.04□□□□□ -2.42
SMC4-227ENST00000497984 ZNF714Q96N38 554 aa-0.04□□□□□ -2.42
SMC4-227ENST00000497984 TCEAL2Q9H3H9 227 aaPredicted RBP-0.04□□□□□ -2.42
SMC4-227ENST00000497984 CACYBPQ9HB71 228 aaKnown RBP-0.04□□□□□ -2.42
SMC4-227ENST00000497984 HSPB8Q9UJY1 196 aa-0.04□□□□□ -2.42
SMC4-227ENST00000497984 ARL2BPQ9Y2Y0 163 aa-0.04□□□□□ -2.42
SMC4-227ENST00000497984 UBR5O95071 2799 aaPredicted RBP-0.04□□□□□ -2.42
SMC4-227ENST00000497984 COL6A5A8TX70 2615 aa-0.04□□□□□ -2.42
SMC4-227ENST00000497984 DENND4CQ5VZ89 1909 aa-0.05□□□□□ -2.42
SMC4-227ENST00000497984 ALPK3Q96L96 1907 aa-0.05□□□□□ -2.42
SMC4-227ENST00000497984 EP300Q09472 2414 aaPredicted RBP-0.05□□□□□ -2.42
SMC4-227ENST00000497984 CREBBPQ92793 2442 aa-0.05□□□□□ -2.42
SMC4-227ENST00000497984 BDP1A6H8Y1 2624 aa-0.05□□□□□ -2.42
SMC4-227ENST00000497984 DUXBA0A1W2PPF3 345 aa-0.05□□□□□ -2.42
SMC4-227ENST00000497984 IFNA6P05013 189 aa-0.05□□□□□ -2.42
SMC4-227ENST00000497984 TMBIM6P55061 237 aa-0.05□□□□□ -2.42
SMC4-227ENST00000497984 VBP1P61758 197 aa-0.05□□□□□ -2.42
SMC4-227ENST00000497984 CCL19Q99731 98 aa-0.05□□□□□ -2.42
SMC4-227ENST00000497984 NABP2Q9BQ15 211 aa-0.05□□□□□ -2.42
SMC4-227ENST00000497984 SPRR2GQ9BYE4 73 aa-0.05□□□□□ -2.42
SMC4-227ENST00000497984 USH2AO75445 5202 aa-0.05□□□□□ -2.42
SMC4-227ENST00000497984 PTPN13Q12923 2485 aa-0.05□□□□□ -2.42
SMC4-227ENST00000497984 TENM2Q9NT68 2774 aa-0.06□□□□□ -2.42
SMC4-227ENST00000497984 DOPEY1Q5JWR5 2465 aa-0.06□□□□□ -2.42
SMC4-227ENST00000497984 DSPP15924 2871 aaKnown RBP-0.06□□□□□ -2.42
SMC4-227ENST00000497984 AKAP13Q12802 2813 aa-0.06□□□□□ -2.42
SMC4-227ENST00000497984 ODAMA1E959 279 aa-0.06□□□□□ -2.42
SMC4-227ENST00000497984 RER1O15258 196 aa-0.06□□□□□ -2.42
SMC4-227ENST00000497984 IGHV3-33P01772 117 aa-0.06□□□□□ -2.42
SMC4-227ENST00000497984 IDO1P14902 403 aa-0.06□□□□□ -2.42
SMC4-227ENST00000497984 MIR22HGQ0VDD5 57 aa-0.06□□□□□ -2.42
SMC4-227ENST00000497984 FADDQ13158 208 aa-0.06□□□□□ -2.42
SMC4-227ENST00000497984 MSMO1Q15800 293 aa-0.06□□□□□ -2.42
SMC4-227ENST00000497984 FOXI2Q6ZQN5 318 aa-0.06□□□□□ -2.42
SMC4-227ENST00000497984 GPX7Q96SL4 187 aaPredicted RBP-0.06□□□□□ -2.42
SMC4-227ENST00000497984 PRNDQ9UKY0 176 aa-0.06□□□□□ -2.42
SMC4-227ENST00000497984 RNF11Q9Y3C5 154 aa-0.06□□□□□ -2.42
SMC4-227ENST00000497984 CACNA1EQ15878 2313 aa-0.06□□□□□ -2.42
SMC4-227ENST00000497984 JMJD1CQ15652 2540 aa-0.06□□□□□ -2.42
SMC4-227ENST00000497984 CHD6Q8TD26 2715 aa-0.06□□□□□ -2.42
SMC4-227ENST00000497984 PKD1L2Q7Z442 2459 aa-0.06□□□□□ -2.42
SMC4-227ENST00000497984 ADGRL3Q9HAR2 1447 aa-0.06□□□□□ -2.42
SMC4-227ENST00000497984 ZFYVE26Q68DK2 2539 aa-0.07□□□□□ -2.42
SMC4-227ENST00000497984 EPPK1P58107 5090 aaKnown RBP-0.07□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 114 ms