RNA–Protein interactions for RNA: YJL154C

VPS35, Transcript of Endosomal subunit of membrane-associated retromer complex, yeastyeast

Gene VPS35, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS35YJL154C GSF2Q04697 403 aaKnown RBP2.52□□□□□ -2.01
VPS35YJL154C SPT6P23615 1451 aaKnown RBP2.52□□□□□ -2.01
VPS35YJL154C SEC18P18759 758 aaKnown RBP2.51□□□□□ -2.01
VPS35YJL154C MRPL36P36531 177 aa2.51□□□□□ -2.01
VPS35YJL154C APM3P38153 483 aa2.51□□□□□ -2.01
VPS35YJL154C CRG1P38892 291 aaRIP-Chip data2.51□□□□□ -2.01not detected
VPS35YJL154C HRB1P38922 454 aaKnown RBP RIP-Chip data2.51□□□□□ -2.01not detected
VPS35YJL154C YJL193WP39542 402 aa2.51□□□□□ -2.01
VPS35YJL154C NDC80P40460 691 aa2.51□□□□□ -2.01
VPS35YJL154C QRI7P43122 407 aa2.51□□□□□ -2.01
VPS35YJL154C TAF1P46677 1066 aa2.51□□□□□ -2.01
VPS35YJL154C CTR1P49573 406 aa2.51□□□□□ -2.01
VPS35YJL154C UBA2P52488 636 aa2.51□□□□□ -2.01
VPS35YJL154C YGR151CP53287 111 aa2.51□□□□□ -2.01
VPS35YJL154C SUN4P53616 420 aa2.51□□□□□ -2.01
VPS35YJL154C YPL216WQ08964 1102 aa2.51□□□□□ -2.01
VPS35YJL154C SGS1P35187 1447 aa2.51□□□□□ -2.01
VPS35YJL154C PHO5P00635 467 aa2.51□□□□□ -2.01
VPS35YJL154C MIS1P09440 975 aaKnown RBP2.51□□□□□ -2.01
VPS35YJL154C BET2P20133 325 aa2.51□□□□□ -2.01
VPS35YJL154C SWC3P31376 625 aa2.51□□□□□ -2.01
VPS35YJL154C RMA1P36001 430 aaKnown RBP2.51□□□□□ -2.01
VPS35YJL154C ELF1P36053 145 aa2.51□□□□□ -2.01
VPS35YJL154C YHL041WP38730 149 aa2.51□□□□□ -2.01
VPS35YJL154C SWD1P39706 426 aa2.51□□□□□ -2.01
VPS35YJL154C SPC98P53540 846 aa2.51□□□□□ -2.01
VPS35YJL154C TIM50Q02776 476 aa2.51□□□□□ -2.01
VPS35YJL154C ARA2Q04212 335 aa2.51□□□□□ -2.01
VPS35YJL154C TRI1Q05024 226 aa2.51□□□□□ -2.01
VPS35YJL154C DBP10Q12389 995 aaKnown RBP2.51□□□□□ -2.01
VPS35YJL154C URA3P03962 267 aa2.5□□□□□ -2.01
VPS35YJL154C SIR3P06701 978 aa2.5□□□□□ -2.01
VPS35YJL154C TRX2P22803 104 aaKnown RBP2.5□□□□□ -2.01
VPS35YJL154C EHT1P38295 451 aa2.5□□□□□ -2.01
VPS35YJL154C YLF2P38746 405 aa2.5□□□□□ -2.01
VPS35YJL154C PMC1P38929 1173 aaPredicted RBP2.5□□□□□ -2.01
VPS35YJL154C VFA1P40080 203 aa2.5□□□□□ -2.01
VPS35YJL154C MAD3P47074 515 aa2.5□□□□□ -2.01
VPS35YJL154C ATG4P53867 494 aa2.5□□□□□ -2.01
VPS35YJL154C DAK1P54838 584 aaKnown RBP2.5□□□□□ -2.01
VPS35YJL154C ECM16Q04217 1267 aaKnown RBP2.5□□□□□ -2.01
VPS35YJL154C BLS1Q06071 122 aa2.5□□□□□ -2.01
VPS35YJL154C RTK1Q12100 620 aaPredicted RBP2.5□□□□□ -2.01
VPS35YJL154C ADH4P10127 382 aa2.5□□□□□ -2.01
VPS35YJL154C THR1P17423 357 aaKnown RBP2.5□□□□□ -2.01
VPS35YJL154C KIN3P22209 435 aa2.5□□□□□ -2.01
VPS35YJL154C DMC1P25453 334 aa2.5□□□□□ -2.01
VPS35YJL154C YCR015CP25616 317 aa2.5□□□□□ -2.01
VPS35YJL154C GLG1P36143 616 aa2.5□□□□□ -2.01
VPS35YJL154C FUI1P38196 639 aa2.5□□□□□ -2.01
VPS35YJL154C IDS2P46958 469 aa2.5□□□□□ -2.01
VPS35YJL154C NMA2P53204 395 aa2.5□□□□□ -2.01
VPS35YJL154C FHN1P53279 174 aa2.5□□□□□ -2.01
VPS35YJL154C YNR071CP53757 342 aa2.5□□□□□ -2.01
VPS35YJL154C UFO1Q04511 668 aa2.5□□□□□ -2.01
VPS35YJL154C PSR2Q07949 397 aa2.5□□□□□ -2.01
VPS35YJL154C PUS9Q12069 462 aa2.5□□□□□ -2.01
VPS35YJL154C MLH3Q12083 715 aa2.5□□□□□ -2.01
VPS35YJL154C MMS1Q06211 1407 aa2.5□□□□□ -2.01
VPS35YJL154C SSM4P40318 1319 aa2.5□□□□□ -2.01
VPS35YJL154C PIF1P07271 859 aa2.5□□□□□ -2.01
VPS35YJL154C ARG1P22768 420 aa2.5□□□□□ -2.01
VPS35YJL154C RAD16P31244 790 aa2.5□□□□□ -2.01
VPS35YJL154C DSS4P32601 143 aa2.5□□□□□ -2.01
VPS35YJL154C YPT7P32939 208 aa2.5□□□□□ -2.01
VPS35YJL154C KSP1P38691 1029 aaKnown RBP2.5□□□□□ -2.01
VPS35YJL154C KHA1P40309 873 aa2.5□□□□□ -2.01
VPS35YJL154C SAP185P40856 1058 aa2.5□□□□□ -2.01
VPS35YJL154C IML2P47031 731 aa2.5□□□□□ -2.01
VPS35YJL154C YGR054WP53235 642 aaKnown RBP2.5□□□□□ -2.01
VPS35YJL154C DIP5P53388 608 aa2.5□□□□□ -2.01
VPS35YJL154C CEG1Q01159 459 aaPredicted RBP2.5□□□□□ -2.01
VPS35YJL154C VPS64Q03944 604 aa2.5□□□□□ -2.01
VPS35YJL154C HOF1Q05080 669 aa2.5□□□□□ -2.01
VPS35YJL154C VPS33P20795 691 aa2.49□□□□□ -2.01
VPS35YJL154C GCD7P32502 381 aaPredicted RBP2.49□□□□□ -2.01
VPS35YJL154C PIH1P38768 344 aa2.49□□□□□ -2.01
VPS35YJL154C YHR097CP38809 366 aaKnown RBP2.49□□□□□ -2.01
VPS35YJL154C ACA1P39970 489 aa2.49□□□□□ -2.01
VPS35YJL154C NGL2Q03264 515 aaKnown RBP2.49□□□□□ -2.01
VPS35YJL154C PNS1Q12412 539 aa2.49□□□□□ -2.01
VPS35YJL154C POL3P15436 1097 aa2.49□□□□□ -2.01
VPS35YJL154C RPS7AP26786 190 aaKnown RBP2.49□□□□□ -2.01
VPS35YJL154C GMH1P36125 273 aa2.49□□□□□ -2.01
VPS35YJL154C CAB2P40506 365 aa2.49□□□□□ -2.01
VPS35YJL154C IMA5P40884 581 aa2.49□□□□□ -2.01
VPS35YJL154C MAD2P40958 196 aa2.49□□□□□ -2.01
VPS35YJL154C GSM1P42950 618 aa2.49□□□□□ -2.01
VPS35YJL154C YGR021WP53212 290 aa2.49□□□□□ -2.01
VPS35YJL154C ATG21Q02887 496 aa2.49□□□□□ -2.01
VPS35YJL154C TRS23Q03784 219 aa2.49□□□□□ -2.01
VPS35YJL154C CRD1Q07560 283 aa2.49□□□□□ -2.01
VPS35YJL154C IZH3Q07959 543 aa2.49□□□□□ -2.01
VPS35YJL154C RKI1Q12189 258 aa2.49□□□□□ -2.01
VPS35YJL154C MDM20Q12387 796 aaKnown RBP2.49□□□□□ -2.01
VPS35YJL154C DNF2Q12675 1612 aa2.49□□□□□ -2.01
VPS35YJL154C MSS18P08593 268 aa2.48□□□□□ -2.01
VPS35YJL154C PFK2P16862 959 aaKnown RBP RIP-Chip data2.48□□□□□ -2.01not detected
VPS35YJL154C MSM1P22438 575 aa2.48□□□□□ -2.01
VPS35YJL154C MTC7P32633 139 aa2.48□□□□□ -2.01
Retrieved 100 of 5,963 RNA–protein pairs in 11.7 ms