RNA–Protein interactions for RNA: YAL059W

ECM1, Transcript of Pre-ribosomal factor involved in 60S ribosomal protein subunit export, yeast

Gene ECM1, Length 639 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ECM1	YAL059W	SEM1	O94742	89 aa		5.49	□□□□□ -1.53
ECM1	YAL059W	RPS21A	P0C0V8	87 aa	Known RBP	5.49	□□□□□ -1.53
ECM1	YAL059W	NGG1	P32494	702 aa		5.49	□□□□□ -1.53
ECM1	YAL059W	MTH1	P35198	433 aa		5.49	□□□□□ -1.53
ECM1	YAL059W	SAW1	P39735	261 aa		5.49	□□□□□ -1.53
ECM1	YAL059W	DJP1	P40564	432 aa		5.49	□□□□□ -1.53
ECM1	YAL059W	CIR1	P42940	261 aa		5.49	□□□□□ -1.53
ECM1	YAL059W	YFL052W	P43551	465 aa		5.49	□□□□□ -1.53
ECM1	YAL059W	OCA1	P50946	238 aa	Predicted RBP	5.49	□□□□□ -1.53
ECM1	YAL059W	ARC35	P53731	342 aa	Known RBP	5.49	□□□□□ -1.53
ECM1	YAL059W	NRG1	Q03125	231 aa		5.49	□□□□□ -1.53
ECM1	YAL059W	NHX1	Q04121	633 aa		5.49	□□□□□ -1.53
ECM1	YAL059W	NUR1	Q12066	484 aa		5.49	□□□□□ -1.53
ECM1	YAL059W	Q0142	Q9ZZW4	58 aa		5.49	□□□□□ -1.53
ECM1	YAL059W	NUC1	P08466	329 aa		5.48	□□□□□ -1.53
ECM1	YAL059W	HOP1	P20050	605 aa		5.48	□□□□□ -1.53
ECM1	YAL059W	ERG4	P25340	473 aa		5.48	□□□□□ -1.53
ECM1	YAL059W	YKR051W	P36142	418 aa		5.48	□□□□□ -1.53
ECM1	YAL059W	NPR3	P38742	1146 aa		5.48	□□□□□ -1.53
ECM1	YAL059W	AXL2	P38928	823 aa		5.48	□□□□□ -1.53
ECM1	YAL059W	TIF4631	P39935	952 aa	Known RBP	5.48	□□□□□ -1.53
ECM1	YAL059W	CBK1	P53894	756 aa		5.48	□□□□□ -1.53
ECM1	YAL059W	NCS2	P53923	493 aa	Predicted RBP	5.48	□□□□□ -1.53
ECM1	YAL059W	TIM11	P81449	96 aa	Predicted RBP	5.48	□□□□□ -1.53
ECM1	YAL059W	MRPL13	Q02204	264 aa		5.48	□□□□□ -1.53
ECM1	YAL059W	YMR111C	Q04461	462 aa	Predicted RBP	5.48	□□□□□ -1.53
ECM1	YAL059W	SFI1	Q12369	946 aa		5.48	□□□□□ -1.53
ECM1	YAL059W	ARP7	Q12406	477 aa		5.48	□□□□□ -1.53
ECM1	YAL059W	MET3	P08536	511 aa		5.47	□□□□□ -1.53
ECM1	YAL059W	CDC16	P09798	840 aa		5.47	□□□□□ -1.53
ECM1	YAL059W	PMS1	P14242	873 aa		5.47	□□□□□ -1.53
ECM1	YAL059W	VMA2	P16140	517 aa	Known RBP	5.47	□□□□□ -1.53
ECM1	YAL059W	APM3	P38153	483 aa		5.47	□□□□□ -1.53
ECM1	YAL059W	HXT6	P39003	570 aa	Known RBP	5.47	□□□□□ -1.53
ECM1	YAL059W	HXT7	P39004	570 aa		5.47	□□□□□ -1.53
ECM1	YAL059W	FCP1	Q03254	732 aa		5.47	□□□□□ -1.53
ECM1	YAL059W	YMR155W	Q03795	547 aa		5.47	□□□□□ -1.53
ECM1	YAL059W	MFB1	Q04922	465 aa		5.47	□□□□□ -1.53
ECM1	YAL059W	VID22	Q05934	901 aa		5.47	□□□□□ -1.53
ECM1	YAL059W	CDC45	Q08032	650 aa		5.47	□□□□□ -1.53
ECM1	YAL059W	HFI1	Q12060	488 aa		5.47	□□□□□ -1.53
ECM1	YAL059W	QCR6	P00127	147 aa		5.46	□□□□□ -1.54
ECM1	YAL059W	LEU2	P04173	364 aa	Predicted RBP	5.46	□□□□□ -1.54
ECM1	YAL059W	SNF1	P06782	633 aa	Known RBP	5.46	□□□□□ -1.54
ECM1	YAL059W	GUK1	P15454	187 aa	Known RBP	5.46	□□□□□ -1.54
ECM1	YAL059W	CKA1	P15790	372 aa		5.46	□□□□□ -1.54
ECM1	YAL059W	PFK2	P16862	959 aa	Known RBP RIP-Chip data	5.46	□□□□□ -1.54	not detected
ECM1	YAL059W	PHO3	P24031	467 aa		5.46	□□□□□ -1.54
ECM1	YAL059W	SUL1	P38359	859 aa		5.46	□□□□□ -1.54
ECM1	YAL059W	CHS7	P38843	316 aa		5.46	□□□□□ -1.54
ECM1	YAL059W	ELO3	P40319	345 aa		5.46	□□□□□ -1.54
ECM1	YAL059W	UBP7	P40453	1071 aa		5.46	□□□□□ -1.54
ECM1	YAL059W	YIL092W	P40497	633 aa		5.46	□□□□□ -1.54
ECM1	YAL059W	UBC9	P50623	157 aa	Predicted RBP	5.46	□□□□□ -1.54
ECM1	YAL059W	SAP4	P53036	818 aa		5.46	□□□□□ -1.54
ECM1	YAL059W	SEC5	P89102	971 aa		5.46	□□□□□ -1.54
ECM1	YAL059W	YPL071C	Q02864	156 aa		5.46	□□□□□ -1.54
ECM1	YAL059W	DLT1	Q04216	342 aa		5.46	□□□□□ -1.54
ECM1	YAL059W	RPN7	Q06103	429 aa	Known RBP	5.46	□□□□□ -1.54
ECM1	YAL059W	OMS1	Q06668	471 aa		5.46	□□□□□ -1.54
ECM1	YAL059W	DCS2	Q12123	353 aa		5.46	□□□□□ -1.54
ECM1	YAL059W	ISA2	Q12425	185 aa		5.46	□□□□□ -1.54
ECM1	YAL059W	RPS21B	Q3E754	87 aa	Known RBP	5.46	□□□□□ -1.54
ECM1	YAL059W	ILS1	P09436	1072 aa	Known RBP	5.45	□□□□□ -1.54
ECM1	YAL059W	MNE1	P24720	663 aa		5.45	□□□□□ -1.54
ECM1	YAL059W	YCL049C	P25577	312 aa		5.45	□□□□□ -1.54
ECM1	YAL059W	CCR4	P31384	837 aa	Known RBP	5.45	□□□□□ -1.54
ECM1	YAL059W	MDL1	P33310	695 aa		5.45	□□□□□ -1.54
ECM1	YAL059W	OAF3	P36023	863 aa		5.45	□□□□□ -1.54
ECM1	YAL059W	SDS22	P36047	338 aa		5.45	□□□□□ -1.54
ECM1	YAL059W	SPC72	P39723	622 aa		5.45	□□□□□ -1.54
ECM1	YAL059W	LSM5	P40089	93 aa	Known RBP	5.45	□□□□□ -1.54
ECM1	YAL059W	ARF3	P40994	183 aa	RIP-Chip data	5.45	□□□□□ -1.54	not detected
ECM1	YAL059W	MUP1	P50276	574 aa		5.45	□□□□□ -1.54
ECM1	YAL059W	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	5.45	□□□□□ -1.54	not detected
ECM1	YAL059W	PRP42	Q03776	544 aa	Known RBP	5.45	□□□□□ -1.54
ECM1	YAL059W	VHS3	Q08438	674 aa		5.45	□□□□□ -1.54
ECM1	YAL059W	TGL5	Q12043	749 aa		5.45	□□□□□ -1.54
ECM1	YAL059W	APM4	Q99186	491 aa		5.45	□□□□□ -1.54
ECM1	YAL059W	RPC40	P07703	335 aa	Known RBP	5.44	□□□□□ -1.54
ECM1	YAL059W	MTF2	P10849	440 aa		5.44	□□□□□ -1.54
ECM1	YAL059W	RPN2	P32565	945 aa	Known RBP	5.44	□□□□□ -1.54
ECM1	YAL059W	YBR225W	P38321	900 aa		5.44	□□□□□ -1.54
ECM1	YAL059W	UME6	P39001	836 aa		5.44	□□□□□ -1.54
ECM1	YAL059W	PCL7	P40186	285 aa		5.44	□□□□□ -1.54
ECM1	YAL059W	YJL068C	P40363	299 aa		5.44	□□□□□ -1.54
ECM1	YAL059W	IMA5	P40884	581 aa		5.44	□□□□□ -1.54
ECM1	YAL059W	RMD8	P43620	662 aa		5.44	□□□□□ -1.54
ECM1	YAL059W	FYV8	P46949	817 aa	Known RBP	5.44	□□□□□ -1.54
ECM1	YAL059W	MAD3	P47074	515 aa		5.44	□□□□□ -1.54
ECM1	YAL059W	YGR250C	P53316	781 aa	Known RBP	5.44	□□□□□ -1.54
ECM1	YAL059W	VPS9	P54787	451 aa		5.44	□□□□□ -1.54
ECM1	YAL059W	RNT1	Q02555	471 aa		5.44	□□□□□ -1.54
ECM1	YAL059W	YOL073C	Q08232	322 aa		5.44	□□□□□ -1.54
ECM1	YAL059W	CUE5	Q08412	411 aa	Known RBP	5.44	□□□□□ -1.54
ECM1	YAL059W	MET17	P06106	444 aa		5.43	□□□□□ -1.54
ECM1	YAL059W	FUM1	P08417	488 aa	Known RBP	5.43	□□□□□ -1.54
ECM1	YAL059W	CAF20	P12962	161 aa	Known RBP	5.43	□□□□□ -1.54
ECM1	YAL059W	UBC1	P21734	215 aa	Known RBP	5.43	□□□□□ -1.54
ECM1	YAL059W	SEC65	P29478	273 aa		5.43	□□□□□ -1.54

Retrieved 100 of 5,963 RNA–protein pairs in 491.6 ms