RNA–Protein interactions for RNA: Q0140

VAR1, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene VAR1, Length 1,197 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VAR1	Q0140	GSY2	P27472	705 aa		4.28	□□□□□ -1.72
VAR1	Q0140	CRG1	P38892	291 aa	RIP-Chip data	4.28	□□□□□ -1.72	not detected
VAR1	Q0140	YMR124W	P39523	943 aa	Known RBP	4.28	□□□□□ -1.72
VAR1	Q0140	YGL260W	P53056	76 aa		4.28	□□□□□ -1.72
VAR1	Q0140	MET13	P53128	600 aa		4.28	□□□□□ -1.72
VAR1	Q0140	TIM50	Q02776	476 aa		4.28	□□□□□ -1.72
VAR1	Q0140	HLR1	Q04429	423 aa		4.28	□□□□□ -1.72
VAR1	Q0140	GFD1	Q04839	188 aa	Known RBP	4.28	□□□□□ -1.72
VAR1	Q0140	STP4	Q07351	490 aa		4.28	□□□□□ -1.72
VAR1	Q0140	YPT1	P01123	206 aa	Known RBP	4.27	□□□□□ -1.73
VAR1	Q0140	PRE4	P30657	266 aa		4.27	□□□□□ -1.73
VAR1	Q0140	ARC40	P38328	384 aa	Known RBP	4.27	□□□□□ -1.73
VAR1	Q0140	FTR1	P40088	404 aa		4.27	□□□□□ -1.73
VAR1	Q0140	YFL015C	P43578	164 aa		4.27	□□□□□ -1.73
VAR1	Q0140	RPS15	Q01855	142 aa	Known RBP	4.27	□□□□□ -1.73
VAR1	Q0140	YLR001C	Q07895	862 aa		4.27	□□□□□ -1.73
VAR1	Q0140	NTG2	Q08214	380 aa		4.27	□□□□□ -1.73
VAR1	Q0140	TGS1	Q12052	315 aa		4.27	□□□□□ -1.73
VAR1	Q0140	RDL1	Q12305	139 aa	Known RBP	4.27	□□□□□ -1.73
VAR1	Q0140	SWI6	P09959	803 aa		4.26	□□□□□ -1.73
VAR1	Q0140	LOT5	P34234	306 aa		4.26	□□□□□ -1.73
VAR1	Q0140	DHR2	P36009	735 aa	Predicted RBP	4.26	□□□□□ -1.73
VAR1	Q0140	YBR139W	P38109	508 aa		4.26	□□□□□ -1.73
VAR1	Q0140	ENT2	Q05785	613 aa		4.26	□□□□□ -1.73
VAR1	Q0140	YLR111W	Q12528	110 aa		4.26	□□□□□ -1.73
VAR1	Q0140	YMR085W	P0CF18	432 aa		4.25	□□□□□ -1.73
VAR1	Q0140	OPT1	P40897	799 aa		4.25	□□□□□ -1.73
VAR1	Q0140	POB3	Q04636	552 aa	Known RBP	4.25	□□□□□ -1.73
VAR1	Q0140	RPS17A	P02407	136 aa	Known RBP	4.24	□□□□□ -1.73
VAR1	Q0140	RPS17B	P14127	136 aa	Known RBP	4.24	□□□□□ -1.73
VAR1	Q0140	HOP1	P20050	605 aa		4.24	□□□□□ -1.73
VAR1	Q0140	RNR3	P21672	869 aa	Known RBP	4.24	□□□□□ -1.73
VAR1	Q0140	CDS1	P38221	457 aa		4.24	□□□□□ -1.73
VAR1	Q0140	YEL025C	P39991	1188 aa		4.24	□□□□□ -1.73
VAR1	Q0140	YIL024C	P40543	189 aa		4.24	□□□□□ -1.73
VAR1	Q0140	LYS20	P48570	428 aa	Known RBP	4.24	□□□□□ -1.73
VAR1	Q0140	TAF4	P50105	388 aa		4.24	□□□□□ -1.73
VAR1	Q0140	ORC1	P54784	914 aa	Predicted RBP	4.24	□□□□□ -1.73
VAR1	Q0140	NSE5	Q03718	556 aa		4.24	□□□□□ -1.73
VAR1	Q0140	CAP1	P28495	268 aa	Known RBP	4.23	□□□□□ -1.73
VAR1	Q0140	BRN1	P38170	754 aa		4.23	□□□□□ -1.73
VAR1	Q0140	RET2	P43621	546 aa		4.23	□□□□□ -1.73
VAR1	Q0140	SAP4	P53036	818 aa		4.23	□□□□□ -1.73
VAR1	Q0140	NOP15	P53927	220 aa	Predicted RBP	4.23	□□□□□ -1.73
VAR1	Q0140	NRT1	Q08485	598 aa		4.23	□□□□□ -1.73
VAR1	Q0140	YCP4	P25349	247 aa	Known RBP	4.22	□□□□□ -1.73
VAR1	Q0140	TDA3	P38758	523 aa		4.22	□□□□□ -1.73
VAR1	Q0140	TDA10	P42938	290 aa		4.22	□□□□□ -1.73
VAR1	Q0140	WAR1	Q03631	944 aa		4.22	□□□□□ -1.73
VAR1	Q0140	SPN1	Q06505	410 aa	Predicted RBP	4.22	□□□□□ -1.73
VAR1	Q0140	CCL1	P37366	393 aa		4.21	□□□□□ -1.74
VAR1	Q0140	YPT10	P38146	199 aa		4.21	□□□□□ -1.74
VAR1	Q0140	PRM2	P40534	656 aa		4.21	□□□□□ -1.74
VAR1	Q0140	IES1	P43579	692 aa		4.21	□□□□□ -1.74
VAR1	Q0140	YNL193W	P53870	558 aa		4.21	□□□□□ -1.74
VAR1	Q0140	OCA5	P38738	679 aa		4.2	□□□□□ -1.74
VAR1	Q0140	MGS1	P40151	587 aa		4.2	□□□□□ -1.74
VAR1	Q0140	SAE2	P46946	345 aa		4.2	□□□□□ -1.74
VAR1	Q0140	TPO3	Q06451	622 aa		4.2	□□□□□ -1.74
VAR1	Q0140	TFB2	Q02939	513 aa		4.19	□□□□□ -1.74
VAR1	Q0140	USA1	Q03714	838 aa		4.19	□□□□□ -1.74
VAR1	Q0140	ARR3	Q06598	404 aa		4.19	□□□□□ -1.74
VAR1	Q0140	AIM41	Q12032	185 aa		4.19	□□□□□ -1.74
VAR1	Q0140	LRO1	P40345	661 aa		4.18	□□□□□ -1.74
VAR1	Q0140	YIL092W	P40497	633 aa		4.18	□□□□□ -1.74
VAR1	Q0140	YEL076C-A	P0CX16	216 aa		4.17	□□□□□ -1.74
VAR1	Q0140	YLR464W	P0CX17	216 aa		4.17	□□□□□ -1.74
VAR1	Q0140	EHT1	P38295	451 aa		4.17	□□□□□ -1.74
VAR1	Q0140	YEL076C	P39971	216 aa		4.17	□□□□□ -1.74
VAR1	Q0140	CFD1	P40558	293 aa		4.17	□□□□□ -1.74
VAR1	Q0140	YPL071C	Q02864	156 aa		4.17	□□□□□ -1.74
VAR1	Q0140	RTT103	Q05543	409 aa		4.17	□□□□□ -1.74
VAR1	Q0140	PCL8	Q08966	492 aa		4.17	□□□□□ -1.74
VAR1	Q0140	CKB2	P38930	258 aa		4.16	□□□□□ -1.74
VAR1	Q0140	IRC7	P43623	340 aa		4.16	□□□□□ -1.74
VAR1	Q0140	COP1	P53622	1201 aa	Known RBP	4.16	□□□□□ -1.74
VAR1	Q0140	HRD3	Q05787	833 aa		4.16	□□□□□ -1.74
VAR1	Q0140	YCG1	Q06680	1035 aa		4.16	□□□□□ -1.74
VAR1	Q0140	YJU2	P28320	278 aa	Predicted RBP	4.15	□□□□□ -1.75
VAR1	Q0140	SEC65	P29478	273 aa		4.15	□□□□□ -1.75
VAR1	Q0140	MTC7	P32633	139 aa		4.15	□□□□□ -1.75
VAR1	Q0140	OSW7	P43611	510 aa		4.15	□□□□□ -1.75
VAR1	Q0140	RPL15B	P54780	204 aa	Predicted RBP	4.15	□□□□□ -1.75
VAR1	Q0140	GRS2	Q06817	618 aa		4.15	□□□□□ -1.75
VAR1	Q0140	RPS21B	Q3E754	87 aa	Known RBP	4.15	□□□□□ -1.75
VAR1	Q0140	BI2	P03873	423 aa		4.14	□□□□□ -1.75
VAR1	Q0140	AAC1	P04710	309 aa		4.14	□□□□□ -1.75
VAR1	Q0140	GLN4	P13188	809 aa	Known RBP	4.14	□□□□□ -1.75
VAR1	Q0140	YHR033W	P38690	423 aa		4.14	□□□□□ -1.75
VAR1	Q0140	ZAP1	P47043	880 aa		4.14	□□□□□ -1.75
VAR1	Q0140	YDL183C	P48569	320 aa		4.14	□□□□□ -1.75
VAR1	Q0140	SDA1	P53313	767 aa	Known RBP	4.14	□□□□□ -1.75
VAR1	Q0140	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	4.14	□□□□□ -1.75	not detected
VAR1	Q0140	AIM44	Q99299	758 aa		4.14	□□□□□ -1.75
VAR1	Q0140	YJR096W	P47137	282 aa		4.13	□□□□□ -1.75
VAR1	Q0140	AHA1	Q12449	350 aa	Known RBP	4.13	□□□□□ -1.75
VAR1	Q0140	ACO1	P19414	778 aa	Known RBP RIP-Chip data	4.12	□□□□□ -1.75	RIP-Chip
VAR1	Q0140	HXT6	P39003	570 aa	Known RBP	4.12	□□□□□ -1.75
VAR1	Q0140	HXT7	P39004	570 aa		4.12	□□□□□ -1.75
VAR1	Q0140	YJL193W	P39542	402 aa		4.12	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 68.3 ms