RNA–Protein interactions for RNA: ENST00000293748.9

SYNGAP1-201, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 4,556 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-201ENST00000293748 LRSAM1Q6UWE0 723 aa13.63□□□□□ -0.23
SYNGAP1-201ENST00000293748 KRT222Q8N1A0 295 aa13.63□□□□□ -0.23
SYNGAP1-201ENST00000293748 TIGD1Q96MW7 591 aa13.63□□□□□ -0.23
SYNGAP1-201ENST00000293748 FBXO3Q9UK99 471 aa13.63□□□□□ -0.23
SYNGAP1-201ENST00000293748 PLA2G12BQ9BX93 195 aa13.63□□□□□ -0.23
SYNGAP1-201ENST00000293748 ZNF165P49910 485 aa13.63□□□□□ -0.23
SYNGAP1-201ENST00000293748 MAPK8IP2Q13387 824 aaPredicted RBP13.63□□□□□ -0.23
SYNGAP1-201ENST00000293748 SLC5A1P13866 664 aa13.62□□□□□ -0.23
SYNGAP1-201ENST00000293748 LMNB1P20700 586 aa13.62□□□□□ -0.23
SYNGAP1-201ENST00000293748 HOXA10P31260 410 aaPredicted RBP13.62□□□□□ -0.23
SYNGAP1-201ENST00000293748 HS1BP3Q53T59 392 aa13.62□□□□□ -0.23
SYNGAP1-201ENST00000293748 LRP10Q7Z4F1 713 aa13.62□□□□□ -0.23
SYNGAP1-201ENST00000293748 XDHP47989 1333 aa13.62□□□□□ -0.23
SYNGAP1-201ENST00000293748 CCDC171Q6TFL3 1326 aa13.62□□□□□ -0.23
SYNGAP1-201ENST00000293748 PAFAH1B1P43034 410 aa13.62□□□□□ -0.23
SYNGAP1-201ENST00000293748 STX1AQ16623 288 aa13.62□□□□□ -0.23
SYNGAP1-201ENST00000293748 CKAP2LQ8IYA6 745 aa13.62□□□□□ -0.23
SYNGAP1-201ENST00000293748 ATP6V0A2Q9Y487 856 aa13.62□□□□□ -0.23
SYNGAP1-201ENST00000293748 SNW1Q13573 536 aaKnown RBP13.62□□□□□ -0.23
SYNGAP1-201ENST00000293748 ZNF804AQ7Z570 1209 aa13.62□□□□□ -0.23
SYNGAP1-201ENST00000293748 TRMT1Q9NXH9 659 aaKnown RBP13.62□□□□□ -0.23
SYNGAP1-201ENST00000293748 KDM2BQ8NHM5 1336 aa13.62□□□□□ -0.23
SYNGAP1-201ENST00000293748 ZSCAN23Q3MJ62 389 aa13.61□□□□□ -0.23
SYNGAP1-201ENST00000293748 TBC1D9Q6ZT07 1266 aa13.61□□□□□ -0.23
SYNGAP1-201ENST00000293748 STX6O43752 255 aa13.61□□□□□ -0.23
SYNGAP1-201ENST00000293748 DYDC1Q8WWB3 177 aa13.61□□□□□ -0.23
SYNGAP1-201ENST00000293748 FKBP4Q02790 459 aaKnown RBP eCLIP13.61□□□□□ -0.23
SYNGAP1-201ENST00000293748 BICC1Q9H694 974 aaKnown RBP13.61□□□□□ -0.23
SYNGAP1-201ENST00000293748 ZKSCAN5Q9Y2L8 839 aa13.61□□□□□ -0.23
SYNGAP1-201ENST00000293748 ABCC4O15439 1325 aa13.61□□□□□ -0.23
SYNGAP1-201ENST00000293748 PXDNLA1KZ92 1463 aa13.61□□□□□ -0.23
SYNGAP1-201ENST00000293748 TAF1LQ8IZX4 1826 aa13.61□□□□□ -0.23
SYNGAP1-201ENST00000293748 ANKRD62A6NC57 917 aa13.61□□□□□ -0.23
SYNGAP1-201ENST00000293748 TTLL11Q8NHH1 800 aa13.61□□□□□ -0.23
SYNGAP1-201ENST00000293748 SUCLG2Q96I99 432 aa13.61□□□□□ -0.23
SYNGAP1-201ENST00000293748 C8orf76Q96K31 380 aa13.61□□□□□ -0.23
SYNGAP1-201ENST00000293748 ZHX3Q9H4I2 956 aa13.61□□□□□ -0.23
SYNGAP1-201ENST00000293748 LEMD3Q9Y2U8 911 aa13.61□□□□□ -0.23
SYNGAP1-201ENST00000293748 COL5A3P25940 1745 aaPredicted RBP13.6□□□□□ -0.23
SYNGAP1-201ENST00000293748 STK11IPQ8N1F8 1099 aa13.6□□□□□ -0.23
SYNGAP1-201ENST00000293748 SYNE4Q8N205 404 aa13.6□□□□□ -0.23
SYNGAP1-201ENST00000293748 CCDC150Q8NCX0 1101 aa13.6□□□□□ -0.23
SYNGAP1-201ENST00000293748 ABCC12Q96J65 1359 aa13.6□□□□□ -0.23
SYNGAP1-201ENST00000293748 YY1P25490 414 aa13.6□□□□□ -0.23
SYNGAP1-201ENST00000293748 CEP135Q66GS9 1140 aa13.6□□□□□ -0.23
SYNGAP1-201ENST00000293748 UBR3Q6ZT12 1888 aa13.6□□□□□ -0.23
SYNGAP1-201ENST00000293748 IL15P40933 162 aaPredicted RBP13.6□□□□□ -0.23
SYNGAP1-201ENST00000293748 TNIP1Q15025 636 aa13.6□□□□□ -0.23
SYNGAP1-201ENST00000293748 GREM2Q9H772 168 aa13.6□□□□□ -0.23
SYNGAP1-201ENST00000293748 BSDC1Q9NW68 430 aaPredicted RBP13.6□□□□□ -0.23
SYNGAP1-201ENST00000293748 MEIS3Q99687 375 aa13.59□□□□□ -0.23
SYNGAP1-201ENST00000293748 MROH5Q6ZUA9 1318 aa13.59□□□□□ -0.23
SYNGAP1-201ENST00000293748 C4AP0C0L4 1744 aa13.59□□□□□ -0.23
SYNGAP1-201ENST00000293748 USO1O60763 962 aaKnown RBP13.59□□□□□ -0.23
SYNGAP1-201ENST00000293748 NOLC1Q14978 699 aaKnown RBP eCLIP13.59□□□□□ -0.23
SYNGAP1-201ENST00000293748 FKBP15Q5T1M5 1219 aa13.59□□□□□ -0.23
SYNGAP1-201ENST00000293748 RIC1Q4ADV7 1423 aa13.59□□□□□ -0.23
SYNGAP1-201ENST00000293748 SMARCA5O60264 1052 aaPredicted RBP13.59□□□□□ -0.23
SYNGAP1-201ENST00000293748 TDO2P48775 406 aa13.59□□□□□ -0.23
SYNGAP1-201ENST00000293748 SAMD1Q6SPF0 538 aaPredicted RBP13.59□□□□□ -0.23
SYNGAP1-201ENST00000293748 FSIP1Q8NA03 581 aa13.59□□□□□ -0.23
SYNGAP1-201ENST00000293748 VPS33BQ9H267 617 aa13.59□□□□□ -0.23
SYNGAP1-201ENST00000293748 CCDC196A0A1B0GTZ2 297 aa13.59□□□□□ -0.23
SYNGAP1-201ENST00000293748 NBPF7P0C2Y1 421 aaPredicted RBP13.59□□□□□ -0.23
SYNGAP1-201ENST00000293748 MAP2K1Q02750 393 aaPredicted RBP13.59□□□□□ -0.23
SYNGAP1-201ENST00000293748 CRY2Q49AN0 593 aa13.59□□□□□ -0.23
SYNGAP1-201ENST00000293748 VIRMAQ69YN4 1812 aaKnown RBP13.58□□□□□ -0.23
SYNGAP1-201ENST00000293748 GBP2P32456 591 aaPredicted RBP13.58□□□□□ -0.23
SYNGAP1-201ENST00000293748 TRERF1Q96PN7 1200 aa13.58□□□□□ -0.23
SYNGAP1-201ENST00000293748 SPDYE4A6NLX3 237 aa13.58□□□□□ -0.24
SYNGAP1-201ENST00000293748 RIMBP2O15034 1052 aa13.58□□□□□ -0.24
SYNGAP1-201ENST00000293748 TUBB4AP04350 444 aa13.58□□□□□ -0.24
SYNGAP1-201ENST00000293748 C9orf131Q5VYM1 1079 aa13.58□□□□□ -0.24
SYNGAP1-201ENST00000293748 LUZP1Q86V48 1076 aa13.58□□□□□ -0.24
SYNGAP1-201ENST00000293748 GDPD2Q9HCC8 539 aa13.58□□□□□ -0.24
SYNGAP1-201ENST00000293748 HDAC9Q9UKV0 1011 aa13.58□□□□□ -0.24
SYNGAP1-201ENST00000293748 YEATS4O95619 227 aa13.58□□□□□ -0.24
SYNGAP1-201ENST00000293748 IARSP41252 1262 aaKnown RBP13.58□□□□□ -0.24
SYNGAP1-201ENST00000293748 TMC6Q7Z403 805 aa13.58□□□□□ -0.24
SYNGAP1-201ENST00000293748 USP44Q9H0E7 712 aa13.58□□□□□ -0.24
SYNGAP1-201ENST00000293748 GJA3Q9Y6H8 435 aa13.58□□□□□ -0.24
SYNGAP1-201ENST00000293748 SEC31BQ9NQW1 1179 aa13.57□□□□□ -0.24
SYNGAP1-201ENST00000293748 SNX21Q969T3 373 aa13.57□□□□□ -0.24
SYNGAP1-201ENST00000293748 LMAN1P49257 510 aa13.57□□□□□ -0.24
SYNGAP1-201ENST00000293748 HDAC1Q13547 482 aaPredicted RBP13.57□□□□□ -0.24
SYNGAP1-201ENST00000293748 NAA15Q9BXJ9 866 aaKnown RBP13.57□□□□□ -0.24
SYNGAP1-201ENST00000293748 GTPBP4Q9BZE4 634 aaKnown RBP13.57□□□□□ -0.24
SYNGAP1-201ENST00000293748 MYH14Q7Z406 1995 aaKnown RBP13.57□□□□□ -0.24
SYNGAP1-201ENST00000293748 EYA2O00167 538 aa13.57□□□□□ -0.24
SYNGAP1-201ENST00000293748 SSBP05455 408 aaKnown RBP eCLIP13.57□□□□□ -0.24
SYNGAP1-201ENST00000293748 KLHL10Q6JEL2 608 aa13.57□□□□□ -0.24
SYNGAP1-201ENST00000293748 RBM27Q9P2N5 1060 aaKnown RBP13.57□□□□□ -0.24
SYNGAP1-201ENST00000293748 QSER1Q2KHR3 1735 aa13.56□□□□□ -0.24
SYNGAP1-201ENST00000293748 CETN2P41208 172 aa13.56□□□□□ -0.24
SYNGAP1-201ENST00000293748 VPS36Q86VN1 386 aa13.56□□□□□ -0.24
SYNGAP1-201ENST00000293748 CELF1Q92879 486 aaKnown RBP13.56□□□□□ -0.24
SYNGAP1-201ENST00000293748 GPBP1L1Q9HC44 474 aaPredicted RBP13.56□□□□□ -0.24
SYNGAP1-201ENST00000293748 IGHDP01880 384 aa13.56□□□□□ -0.24
SYNGAP1-201ENST00000293748 SMC1AQ14683 1233 aaKnown RBP13.56□□□□□ -0.24
SYNGAP1-201ENST00000293748 OGFOD1Q8N543 542 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms