RNA–Protein interactions for RNA: ENST00000581711.1

SMCHD1-207, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 546 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-207ENST00000581711 HS3ST2Q9Y278 367 aa0.34□□□□□ -2.36
SMCHD1-207ENST00000581711 UTP11Q9Y3A2 253 aaKnown RBP0.34□□□□□ -2.36
SMCHD1-207ENST00000581711 PRELID3BQ9Y3B1 194 aa0.34□□□□□ -2.36
SMCHD1-207ENST00000581711 V9GYY5 206 aaPredicted RBP0.34□□□□□ -2.36
SMCHD1-207ENST00000581711 MYO3BQ8WXR4 1341 aa0.34□□□□□ -2.36
SMCHD1-207ENST00000581711 HEATR1Q9H583 2144 aaKnown RBP0.34□□□□□ -2.36
SMCHD1-207ENST00000581711 COL12A1Q99715 3063 aa0.34□□□□□ -2.36
SMCHD1-207ENST00000581711 IGSF10Q6WRI0 2623 aa0.34□□□□□ -2.36
SMCHD1-207ENST00000581711 CNTRLQ7Z7A1 2325 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 RTL1A6NKG5 1358 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 MED1Q15648 1581 aaPredicted RBP0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 A0A0C4DFX4 3053 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 EP300Q09472 2414 aaPredicted RBP0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 PIK3C2GO75747 1445 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 C1orf196B1AJZ1 125 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 TMEM114B3SHH9 223 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 CLDN25C9JDP6 229 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 CYB5BO43169 146 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 DNAL4O96015 105 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 SERPINE1P05121 402 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 ANP32AP39687 249 aaKnown RBP0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 RHOBP62745 196 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 CCL7P80098 99 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 TSNQ15631 228 aaKnown RBP0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 ESRGQ1W209 222 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 MPV17LQ2QL34 196 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 BRMS1LQ5PSV4 323 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 LYRM7Q5U5X0 104 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 Q6Q795 121 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 SPATA8Q6RVD6 105 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 SOSTDC1Q6X4U4 206 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 LCA10Q71F78 164 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 C3orf56Q8N813 242 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 LINC00301Q8NCQ3 95 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 OR52L1Q8NGH7 329 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 OR2T10Q8NGZ9 312 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 SLC25A40Q8TBP6 338 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 TEX47Q8TBZ9 253 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 WFDC5Q8TCV5 224 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 FAM172AQ8WUF8 416 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 C4orf3Q8WVX3 66 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 ITFG2Q969R8 447 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 BTF3L4Q96K17 158 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 SIGMAR1Q99720 223 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 HIST1H2BLQ99880 126 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 C6orf62Q9GZU0 229 aaPredicted RBP0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 C14orf132Q9NPU4 83 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 RASL12Q9NYN1 266 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 TVP23BQ9NYZ1 205 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 IDI2-AS1Q9NZ38 188 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 FBXO5Q9UKT4 447 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 SLC22A13Q9Y226 551 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 KIAA1549Q9HCM3 1950 aa0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 COL1A1P02452 1464 aaPredicted RBP0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 ARHGEF28Q8N1W1 1705 aaKnown RBP0.33□□□□□ -2.36
SMCHD1-207ENST00000581711 UBR2Q8IWV8 1755 aa0.32□□□□□ -2.36
SMCHD1-207ENST00000581711 ZFYVE9O95405 1425 aa0.32□□□□□ -2.36
SMCHD1-207ENST00000581711 SPG11Q96JI7 2443 aa0.32□□□□□ -2.36
SMCHD1-207ENST00000581711 BDP1A6H8Y1 2624 aa0.32□□□□□ -2.36
SMCHD1-207ENST00000581711 OR7C1O76099 320 aaPredicted RBP0.32□□□□□ -2.36
SMCHD1-207ENST00000581711 HAND1O96004 215 aa0.32□□□□□ -2.36
SMCHD1-207ENST00000581711 ERP29P30040 261 aaKnown RBP0.32□□□□□ -2.36
SMCHD1-207ENST00000581711 EFNA4P52798 201 aa0.32□□□□□ -2.36
SMCHD1-207ENST00000581711 DEFA3P59666 94 aa0.32□□□□□ -2.36
SMCHD1-207ENST00000581711 EIF5AP63241 154 aaKnown RBP0.32□□□□□ -2.36
SMCHD1-207ENST00000581711 AKIRIN2Q53H80 203 aa0.32□□□□□ -2.36
SMCHD1-207ENST00000581711 GNPDA2Q8TDQ7 276 aa0.32□□□□□ -2.36
SMCHD1-207ENST00000581711 SLAMF6Q96DU3 332 aa0.32□□□□□ -2.36
SMCHD1-207ENST00000581711 ADAT3Q96EY9 351 aaPredicted RBP0.32□□□□□ -2.36
SMCHD1-207ENST00000581711 PRAP1Q96NZ9 151 aa0.32□□□□□ -2.36
SMCHD1-207ENST00000581711 PRADC1Q9BSG0 188 aa0.32□□□□□ -2.36
SMCHD1-207ENST00000581711 TMEM70Q9BUB7 260 aa0.32□□□□□ -2.36
SMCHD1-207ENST00000581711 KIFC1Q9BW19 673 aa0.32□□□□□ -2.36
SMCHD1-207ENST00000581711 TLNRD1Q9H1K6 362 aa0.32□□□□□ -2.36
SMCHD1-207ENST00000581711 RNF122Q9H9V4 155 aa0.32□□□□□ -2.36
SMCHD1-207ENST00000581711 UCK1Q9HA47 277 aa0.32□□□□□ -2.36
SMCHD1-207ENST00000581711 NMNAT1Q9HAN9 279 aaPredicted RBP0.32□□□□□ -2.36
SMCHD1-207ENST00000581711 BCL2L10Q9HD36 194 aa0.32□□□□□ -2.36
SMCHD1-207ENST00000581711 PLXNA4Q9HCM2 1894 aa0.32□□□□□ -2.36
SMCHD1-207ENST00000581711 MYO18AQ92614 2054 aaKnown RBP0.32□□□□□ -2.36
SMCHD1-207ENST00000581711 GCN1Q92616 2671 aaKnown RBP0.32□□□□□ -2.36
SMCHD1-207ENST00000581711 TENM2Q9NT68 2774 aa0.32□□□□□ -2.36
SMCHD1-207ENST00000581711 RIMBP3CA6NJZ7 1639 aa0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 RIMBP3BA6NNM3 1639 aa0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 RIMBP3Q9UFD9 1639 aa0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 FLNCQ14315 2725 aa0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 CCDC144AA2RUR9 1427 aa0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 PTPRFP10586 1907 aa0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 ALPK3Q96L96 1907 aa0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 COL24A1Q17RW2 1714 aa0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 TRGV10A0A0A0MS01 117 aa0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 E2F6O75461 281 aa0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 GADD45GO95257 159 aa0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 DHFRP00374 187 aa0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 SRIP30626 198 aa0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 RNASE4P34096 147 aaKnown RBP0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 SRP14P37108 136 aaKnown RBP0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 PIGPP57054 158 aa0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 DYNLT1P63172 113 aa0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 KRR1Q13601 381 aaKnown RBP0.31□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 1076.2 ms