RNA–Protein interactions for RNA: ENST00000581711.1

SMCHD1-207, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 546 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-207ENST00000581711 WRNQ14191 1432 aaPredicted RBP eCLIP0.38□□□□□ -2.351e-10■■■■■ 128
SMCHD1-207ENST00000581711 PTBP1P26599 531 aaKnown RBP eCLIP3.06□□□□□ -1.923e-54■■■■■ 82.8
SMCHD1-207ENST00000581711 TBRG4Q969Z0 631 aaKnown RBP eCLIP2.42□□□□□ -2.023e-8■■■■■ 70.6
SMCHD1-207ENST00000581711 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.04□□□□□ -2.46e-15■■■■■ 66.7
SMCHD1-207ENST00000581711 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.94□□□□□ -0.822e-11■■■■■ 55.9
SMCHD1-207ENST00000581711 EFTUD2Q15029 972 aaKnown RBP eCLIP3.68□□□□□ -1.824e-8■■■■■ 45
SMCHD1-207ENST00000581711 SF3B4Q15427 424 aaKnown RBP eCLIP4.72□□□□□ -1.657e-7■■■■□ 26.5
SMCHD1-207ENST00000581711 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.18■□□□□ 0.181e-10■■■■□ 24.6
SMCHD1-207ENST00000581711 HNRNPMP52272 730 aaKnown RBP eCLIP5.79□□□□□ -1.486e-7■■■■□ 24.4
SMCHD1-207ENST00000581711 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.97□□□□□ -1.775e-7■■■■□ 23.2
SMCHD1-207ENST00000581711 MATR3P43243 847 aaKnown RBP eCLIP3.95□□□□□ -1.786e-7■■■■□ 22.9
SMCHD1-207ENST00000581711 PPIGQ13427 754 aaKnown RBP eCLIP4.07□□□□□ -1.761e-6■■■■□ 19.8
SMCHD1-207ENST00000581711 QKIQ96PU8 341 aaKnown RBP eCLIP1.5□□□□□ -2.172e-8■■■□□ 19
SMCHD1-207ENST00000581711 FXR2P51116 673 aaKnown RBP eCLIP19.13■□□□□ 0.655e-6■■■□□ 14.9
SMCHD1-207ENST00000581711 U2AF2P26368 475 aaKnown RBP eCLIP2.04□□□□□ -2.081e-8■■□□□ 13.7
SMCHD1-207ENST00000581711 GPKOWQ92917 476 aaPredicted RBP eCLIP11.81□□□□□ -0.524e-6■■□□□ 13
SMCHD1-207ENST00000581711 KHSRPQ92945 711 aaKnown RBP eCLIP15.31■□□□□ 0.041e-8■■□□□ 12.7
SMCHD1-207ENST00000581711 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.05□□□□□ -1.285e-7■■□□□ 12.6
SMCHD1-207ENST00000581711 AQRO60306 1485 aaKnown RBP eCLIP1.37□□□□□ -2.193e-6■□□□□ 11
SMCHD1-207ENST00000581711 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.97■■□□□ 1.116e-6■□□□□ 8.3
Retrieved 20 of 20 RNA–protein pairs in 10.8 ms