RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 IGKV1D-42A0A075B6H8 117 aa0.75□□□□□ -2.29
CD44-215ENST00000525241 TRAV9-1A0A075B6T8 112 aa0.75□□□□□ -2.29
CD44-215ENST00000525241 PIRO00625 290 aa0.75□□□□□ -2.29
CD44-215ENST00000525241 GEMIN2O14893 280 aaKnown RBP0.75□□□□□ -2.29
CD44-215ENST00000525241 PDE6DO43924 150 aa0.75□□□□□ -2.29
CD44-215ENST00000525241 ATP5HO75947 161 aa0.75□□□□□ -2.29
CD44-215ENST00000525241 IFNA10P01566 189 aa0.75□□□□□ -2.29
CD44-215ENST00000525241 METTL15P1P0C7V9 234 aa0.75□□□□□ -2.29
CD44-215ENST00000525241 COX6A1P12074 109 aa0.75□□□□□ -2.29
CD44-215ENST00000525241 ZNF846Q147U1 533 aa0.75□□□□□ -2.29
CD44-215ENST00000525241 Q6Q795 121 aa0.75□□□□□ -2.29
CD44-215ENST00000525241 LCN15Q6UWW0 184 aa0.75□□□□□ -2.29
CD44-215ENST00000525241 LCA10Q71F78 164 aa0.75□□□□□ -2.29
CD44-215ENST00000525241 DEFB128Q7Z7B8 93 aa0.75□□□□□ -2.29
CD44-215ENST00000525241 SIGLECL1Q8N7X8 197 aa0.75□□□□□ -2.29
CD44-215ENST00000525241 PXT1Q8NFP0 134 aa0.75□□□□□ -2.29
CD44-215ENST00000525241 OR11H6Q8NGC7 330 aa0.75□□□□□ -2.29
CD44-215ENST00000525241 WFDC5Q8TCV5 224 aa0.75□□□□□ -2.29
CD44-215ENST00000525241 DGCR14Q96DF8 476 aaKnown RBP0.75□□□□□ -2.29
CD44-215ENST00000525241 SCGB3A1Q96QR1 104 aa0.75□□□□□ -2.29
CD44-215ENST00000525241 SIGMAR1Q99720 223 aa0.75□□□□□ -2.29
CD44-215ENST00000525241 CMSS1Q9BQ75 279 aaKnown RBP0.75□□□□□ -2.29
CD44-215ENST00000525241 ULBP3Q9BZM4 244 aa0.75□□□□□ -2.29
CD44-215ENST00000525241 ARMC1Q9NVT9 282 aa0.75□□□□□ -2.29
CD44-215ENST00000525241 MYO18AQ92614 2054 aaKnown RBP0.75□□□□□ -2.29
CD44-215ENST00000525241 CRYBG3Q68DQ2 2970 aa0.75□□□□□ -2.29
CD44-215ENST00000525241 OR2T1O43869 369 aa0.74□□□□□ -2.29
CD44-215ENST00000525241 CRYZL1O95825 349 aa0.74□□□□□ -2.29
CD44-215ENST00000525241 SERPINA1P01009 418 aa0.74□□□□□ -2.29
CD44-215ENST00000525241 C8GP07360 202 aa0.74□□□□□ -2.29
CD44-215ENST00000525241 HTR1AP08908 422 aa0.74□□□□□ -2.29
CD44-215ENST00000525241 PRB4P10163 310 aaPredicted RBP0.74□□□□□ -2.29
CD44-215ENST00000525241 CRYGAP11844 174 aa0.74□□□□□ -2.29
CD44-215ENST00000525241 TAF1AQ15573 450 aaPredicted RBP0.74□□□□□ -2.29
CD44-215ENST00000525241 LIN52Q52LA3 116 aa0.74□□□□□ -2.29
CD44-215ENST00000525241 LYG2Q86SG7 212 aa0.74□□□□□ -2.29
CD44-215ENST00000525241 CLVS1Q8IUQ0 354 aaPredicted RBP0.74□□□□□ -2.29
CD44-215ENST00000525241 FAM19A2Q8N3H0 131 aa0.74□□□□□ -2.29
CD44-215ENST00000525241 C3orf56Q8N813 242 aa0.74□□□□□ -2.29
CD44-215ENST00000525241 C12orf29Q8N999 325 aa0.74□□□□□ -2.29
CD44-215ENST00000525241 C2orf50Q96LR7 162 aa0.74□□□□□ -2.29
CD44-215ENST00000525241 SERPINI1Q99574 410 aa0.74□□□□□ -2.29
CD44-215ENST00000525241 CKLFQ9UBR5 152 aa0.74□□□□□ -2.29
CD44-215ENST00000525241 ERGIC3Q9Y282 383 aa0.74□□□□□ -2.29
CD44-215ENST00000525241 SNURFQ9Y675 71 aa0.74□□□□□ -2.29
CD44-215ENST00000525241 DCHS1Q96JQ0 3298 aa0.74□□□□□ -2.29
CD44-215ENST00000525241 HMCN2Q8NDA2 5059 aa0.74□□□□□ -2.29
CD44-215ENST00000525241 RAPGEF6Q8TEU7 1601 aa0.74□□□□□ -2.29
CD44-215ENST00000525241 ADGRB2O60241 1585 aa0.74□□□□□ -2.29
CD44-215ENST00000525241 WDR87Q6ZQQ6 2873 aa0.74□□□□□ -2.29
CD44-215ENST00000525241 CASP8AP2Q9UKL3 1982 aa0.74□□□□□ -2.29
CD44-215ENST00000525241 NIPBLQ6KC79 2804 aaeCLIP0.74□□□□□ -2.29
CD44-215ENST00000525241 FAM186AA6NE01 2351 aa0.74□□□□□ -2.29
CD44-215ENST00000525241 ANKRD31Q8N7Z5 1873 aa0.73□□□□□ -2.29
CD44-215ENST00000525241 FMN1Q68DA7 1419 aa0.73□□□□□ -2.29
CD44-215ENST00000525241 DSPP15924 2871 aaKnown RBP0.73□□□□□ -2.29
CD44-215ENST00000525241 CHD3Q12873 2000 aaKnown RBP0.73□□□□□ -2.29
CD44-215ENST00000525241 hCG_1818297A0A087WSY0 165 aa0.73□□□□□ -2.29
CD44-215ENST00000525241 A8MT66 165 aa0.73□□□□□ -2.29
CD44-215ENST00000525241 OR2B3O76000 313 aa0.73□□□□□ -2.29
CD44-215ENST00000525241 PPIBP23284 216 aaKnown RBP0.73□□□□□ -2.29
CD44-215ENST00000525241 FKBP2P26885 142 aaKnown RBP0.73□□□□□ -2.29
CD44-215ENST00000525241 EIF2B2P49770 351 aaKnown RBP0.73□□□□□ -2.29
CD44-215ENST00000525241 SERPINB9P50453 376 aa0.73□□□□□ -2.29
CD44-215ENST00000525241 HSPE1P61604 102 aaKnown RBP0.73□□□□□ -2.29
CD44-215ENST00000525241 KRT222Q8N1A0 295 aa0.73□□□□□ -2.29
CD44-215ENST00000525241 HIST3H2BBQ8N257 126 aa0.73□□□□□ -2.29
CD44-215ENST00000525241 CDC26Q8NHZ8 85 aa0.73□□□□□ -2.29
CD44-215ENST00000525241 AQP3Q92482 292 aa0.73□□□□□ -2.29
CD44-215ENST00000525241 MIXL1Q9H2W2 232 aa0.73□□□□□ -2.29
CD44-215ENST00000525241 TRABDQ9H4I3 376 aa0.73□□□□□ -2.29
CD44-215ENST00000525241 NMNAT1Q9HAN9 279 aaPredicted RBP0.73□□□□□ -2.29
CD44-215ENST00000525241 ARL5AQ9Y689 179 aa0.73□□□□□ -2.29
CD44-215ENST00000525241 ZCCHC11Q5TAX3 1644 aaKnown RBP0.73□□□□□ -2.29
CD44-215ENST00000525241 OTOGQ6ZRI0 2925 aa0.73□□□□□ -2.29
CD44-215ENST00000525241 TGP01266 2768 aa0.73□□□□□ -2.29
CD44-215ENST00000525241 SPTA1P02549 2419 aa0.73□□□□□ -2.29
CD44-215ENST00000525241 MIA2Q96PC5 1412 aa0.72□□□□□ -2.29
CD44-215ENST00000525241 NHSL1Q5SYE7 1610 aa0.72□□□□□ -2.29
CD44-215ENST00000525241 MYO5AQ9Y4I1 1855 aaKnown RBP0.72□□□□□ -2.29
CD44-215ENST00000525241 TRBV19A0A075B6N1 114 aa0.72□□□□□ -2.29
CD44-215ENST00000525241 MIFP14174 115 aa0.72□□□□□ -2.29
CD44-215ENST00000525241 ATP5G3P48201 142 aa0.72□□□□□ -2.29
CD44-215ENST00000525241 PDE6HQ13956 83 aa0.72□□□□□ -2.29
CD44-215ENST00000525241 GOLT1AQ6ZVE7 132 aa0.72□□□□□ -2.29
CD44-215ENST00000525241 OR4D11Q8NGI4 311 aa0.72□□□□□ -2.29
CD44-215ENST00000525241 MCFD2Q8NI22 146 aa0.72□□□□□ -2.29
CD44-215ENST00000525241 SLC25A40Q8TBP6 338 aa0.72□□□□□ -2.29
CD44-215ENST00000525241 TMEM106AQ96A25 262 aa0.72□□□□□ -2.29
CD44-215ENST00000525241 GPR146Q96CH1 333 aa0.72□□□□□ -2.29
CD44-215ENST00000525241 SLAMF6Q96DU3 332 aa0.72□□□□□ -2.29
CD44-215ENST00000525241 IL20Q9NYY1 176 aa0.72□□□□□ -2.29
CD44-215ENST00000525241 TVP23BQ9NYZ1 205 aa0.72□□□□□ -2.29
CD44-215ENST00000525241 OR5AC2Q9NZP5 309 aa0.72□□□□□ -2.29
CD44-215ENST00000525241 ARL2BPQ9Y2Y0 163 aa0.72□□□□□ -2.29
CD44-215ENST00000525241 LRBAP50851 2863 aa0.72□□□□□ -2.29
CD44-215ENST00000525241 COL12A1Q99715 3063 aa0.72□□□□□ -2.29
CD44-215ENST00000525241 PTPRFP10586 1907 aa0.72□□□□□ -2.29
CD44-215ENST00000525241 FREM3P0C091 2139 aa0.71□□□□□ -2.3
CD44-215ENST00000525241 TRAV14DV4A0A0A6YYC5 116 aa0.71□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms