RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Vmn1r117L7N2C9 307 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Ccl7Q03366 97 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 BckdhbQ6P3A8 390 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Neil2Q6R2P8 329 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Zfp87Q8K2A4 540 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Ear10Q923L6 156 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Kif26aQ52KG5 1881 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Klri1B2KG20 248 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Hoxa1P09022 331 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Foxa3P35584 353 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Spatc1Q148B6 480 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Klre1Q8CJC7 226 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Zfp958Q99LG7 467 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Zfand6Q9DCH6 223 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Gm15440D3Z3P4 90 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 P01806 116 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Efnb1P52795 345 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Dlx4P70436 240 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Smim12Q78RX3 92 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Dmrta1Q8CFG4 490 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Vmn1r47Q9EQ51 310 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Ighv5-2A0A0A6YVX8 117 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Trbv26A0A0B4J1P5 115 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Olfr418A0A140T8J6 310 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Rdh16O54909 317 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 RnasekQ8K3C0 98 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Chac2Q9CQG1 178 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Hdhd3Q9CYW4 251 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Fbxo24Q9D417 589 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Tmem9bQ9JJR8 199 aa13.42□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Ralgapa1Q6GYP7 2035 aa13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Olfr1053L7MU59 313 aa13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Gm20767O70517 169 aa13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Alox12bO70582 701 aa13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Mc5rP41149 325 aa13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Foxr2Q3UM89 302 aa13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Ceacam10Q61400 265 aa13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Lpar6Q8BMC0 344 aa13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Neurl3Q8CJC5 254 aa13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Tbx19Q99ME7 446 aa13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Rcl1Q9JJT0 373 aaKnown RBP13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Plxna4Q80UG2 1893 aa13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Mmp9P41245 730 aa13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Vmn1r194J3JS27 296 aa13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Gm3512L7N206 146 aa13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Mettl4Q3U034 471 aa13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Sf3a2Q62203 475 aaKnown RBP13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Oxgr1Q6IYF8 337 aa13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Ly6g6eQ8K1T6 166 aa13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Olfr786Q8VFH8 312 aa13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Cox20Q9D7J4 117 aa13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Olfr959Q9EQ86 311 aa13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Pitx3O35160 302 aa13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Cd46O88174 365 aa13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Cdx1P18111 268 aa13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 SergefQ80YD6 464 aa13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Rnd1Q8BLR7 232 aa13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Olfr1002Q8VFK2 318 aa13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Olfr124Q8VGW6 315 aa13.41□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Olfr1220F7BL62 311 aa13.4□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Slc17a3G3UWD9 498 aa13.4□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Cst7O89098 144 aa13.4□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Rom1P32958 351 aa13.4□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Sap30lQ5SQF8 182 aa13.4□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Olfr490Q8VFD2 314 aa13.4□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 VhlP40338 181 aa13.4□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Olfr275Q7TS18 319 aa13.4□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Aqp11Q8BHH1 271 aa13.4□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Tmem212Q8C6V3 187 aa13.4□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Tmem107Q9CPV0 140 aa13.4□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 BlnkQ9QUN3 457 aa13.4□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Trav5-1A0A075B5Z7 114 aa13.4□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Gm20422E9PUR3 255 aa13.4□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 CebpbP28033 296 aa13.4□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Npy4rQ61041 375 aa13.4□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Gm10277Q6R5C6 214 aa13.4□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Urm1Q9D2P4 101 aa13.4□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Dcbld1Q9D4J3 503 aa13.4□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 SelenofQ9ERR7 162 aa13.4□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Ntn3Q9R1A3 580 aa13.4□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Atoh7Q9Z2E5 149 aa13.4□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Gm44596A0A0N4SVA0 210 aa13.4□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Gm4884E9PVP9 694 aa13.4□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Tcrg-V1P06325 135 aa13.4□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Hist1h2baP70696 127 aa13.4□□□□□ -0.26
Ccdc88b-201ENSMUST00000113440 Gm765B2RVL9 189 aa13.39□□□□□ -0.27
Ccdc88b-201ENSMUST00000113440 Tcf21O35437 179 aa13.39□□□□□ -0.27
Ccdc88b-201ENSMUST00000113440 Rab24P35290 203 aa13.39□□□□□ -0.27
Ccdc88b-201ENSMUST00000113440 HhexP43120 271 aa13.39□□□□□ -0.27
Ccdc88b-201ENSMUST00000113440 Gcm1P70348 436 aa13.39□□□□□ -0.27
Ccdc88b-201ENSMUST00000113440 Bex6Q3TZW7 114 aa13.39□□□□□ -0.27
Ccdc88b-201ENSMUST00000113440 Znf48Q3US17 591 aa13.39□□□□□ -0.27
Ccdc88b-201ENSMUST00000113440 Abhd14aQ922Q6 247 aa13.39□□□□□ -0.27
Ccdc88b-201ENSMUST00000113440 PtprdQ64487 1912 aa13.39□□□□□ -0.27
Ccdc88b-201ENSMUST00000113440 Gtf3c1Q8K284 2101 aa13.39□□□□□ -0.27
Ccdc88b-201ENSMUST00000113440 Scgb1b3J3QJY4 93 aa13.39□□□□□ -0.27
Ccdc88b-201ENSMUST00000113440 C1ql1O88992 258 aa13.39□□□□□ -0.27
Ccdc88b-201ENSMUST00000113440 ElobP62869 118 aa13.39□□□□□ -0.27
Ccdc88b-201ENSMUST00000113440 Lrfn3Q8BLY3 626 aa13.39□□□□□ -0.27
Ccdc88b-201ENSMUST00000113440 Vmn1r61W4VSP5 300 aa13.39□□□□□ -0.27
Retrieved 100 of 22,080 RNA–protein pairs in 56.1 ms