Protein–RNA interactions for Protein: A0A075B5Z7

Trav5-1, T cell receptor alpha variable 5-1 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5-1A0A075B5Z7 Gm25239-201ENSMUST00000174915 86 ntBASIC32.74■■■□□ 2.83
Trav5-1A0A075B5Z7 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
Trav5-1A0A075B5Z7 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
Trav5-1A0A075B5Z7 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
Trav5-1A0A075B5Z7 Gm15042-201ENSMUST00000120212 883 ntBASIC28.86■■■□□ 2.21
Trav5-1A0A075B5Z7 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Trav5-1A0A075B5Z7 Gm24109-201ENSMUST00000175489 103 ntBASIC28.23■■■□□ 2.11
Trav5-1A0A075B5Z7 Gm15045-201ENSMUST00000117359 883 ntBASIC28.19■■■□□ 2.1
Trav5-1A0A075B5Z7 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC28.03■■■□□ 2.08
Trav5-1A0A075B5Z7 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
Trav5-1A0A075B5Z7 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC27.64■■■□□ 2.02
Trav5-1A0A075B5Z7 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
Trav5-1A0A075B5Z7 Gm23366-201ENSMUST00000175022 89 ntBASIC27.46■■□□□ 1.99
Trav5-1A0A075B5Z7 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Trav5-1A0A075B5Z7 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Trav5-1A0A075B5Z7 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC27.01■■□□□ 1.91
Trav5-1A0A075B5Z7 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Trav5-1A0A075B5Z7 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC26.8■■□□□ 1.88
Trav5-1A0A075B5Z7 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Trav5-1A0A075B5Z7 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Trav5-1A0A075B5Z7 Psd-208ENSMUST00000224556 2034 ntBASIC26.65■■□□□ 1.86
Trav5-1A0A075B5Z7 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC26.63■■□□□ 1.85
Trav5-1A0A075B5Z7 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
Trav5-1A0A075B5Z7 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Trav5-1A0A075B5Z7 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC26.49■■□□□ 1.83
Trav5-1A0A075B5Z7 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC26.47■■□□□ 1.83
Trav5-1A0A075B5Z7 AC153911.1-202ENSMUST00000218534 1034 ntBASIC26.44■■□□□ 1.82
Trav5-1A0A075B5Z7 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC26.41■■□□□ 1.82
Trav5-1A0A075B5Z7 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.8
Trav5-1A0A075B5Z7 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC26.11■■□□□ 1.77
Trav5-1A0A075B5Z7 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Trav5-1A0A075B5Z7 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC26.03■■□□□ 1.76
Trav5-1A0A075B5Z7 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC26.02■■□□□ 1.76
Trav5-1A0A075B5Z7 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Trav5-1A0A075B5Z7 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Trav5-1A0A075B5Z7 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Trav5-1A0A075B5Z7 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC25.84■■□□□ 1.73
Trav5-1A0A075B5Z7 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Trav5-1A0A075B5Z7 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC25.75■■□□□ 1.71
Trav5-1A0A075B5Z7 Gm25238-201ENSMUST00000174914 89 ntBASIC25.74■■□□□ 1.71
Trav5-1A0A075B5Z7 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC25.62■■□□□ 1.69
Trav5-1A0A075B5Z7 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Trav5-1A0A075B5Z7 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Trav5-1A0A075B5Z7 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Trav5-1A0A075B5Z7 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Trav5-1A0A075B5Z7 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC25.39■■□□□ 1.66
Trav5-1A0A075B5Z7 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
Trav5-1A0A075B5Z7 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC25.34■■□□□ 1.65
Trav5-1A0A075B5Z7 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Trav5-1A0A075B5Z7 Gm27325-201ENSMUST00000175467 74 ntBASIC25.31■■□□□ 1.64
Trav5-1A0A075B5Z7 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC25.21■■□□□ 1.63
Trav5-1A0A075B5Z7 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Trav5-1A0A075B5Z7 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC25.13■■□□□ 1.61
Trav5-1A0A075B5Z7 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
Trav5-1A0A075B5Z7 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Trav5-1A0A075B5Z7 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC25.09■■□□□ 1.61
Trav5-1A0A075B5Z7 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Trav5-1A0A075B5Z7 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC25.03■■□□□ 1.6
Trav5-1A0A075B5Z7 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Trav5-1A0A075B5Z7 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC24.99■■□□□ 1.59
Trav5-1A0A075B5Z7 Gm10524-201ENSMUST00000181931 1893 ntBASIC24.99■■□□□ 1.59
Trav5-1A0A075B5Z7 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Trav5-1A0A075B5Z7 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Trav5-1A0A075B5Z7 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC24.91■■□□□ 1.58
Trav5-1A0A075B5Z7 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.57
Trav5-1A0A075B5Z7 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
Trav5-1A0A075B5Z7 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC24.86■■□□□ 1.57
Trav5-1A0A075B5Z7 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
Trav5-1A0A075B5Z7 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Trav5-1A0A075B5Z7 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Trav5-1A0A075B5Z7 Rab21-202ENSMUST00000218831 843 ntBASIC24.76■■□□□ 1.55
Trav5-1A0A075B5Z7 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC24.74■■□□□ 1.55
Trav5-1A0A075B5Z7 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Trav5-1A0A075B5Z7 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Trav5-1A0A075B5Z7 Gm25262-201ENSMUST00000174934 133 ntBASIC24.66■■□□□ 1.54
Trav5-1A0A075B5Z7 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC24.66■■□□□ 1.54
Trav5-1A0A075B5Z7 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC24.64■■□□□ 1.54
Trav5-1A0A075B5Z7 CT025624.2-201ENSMUST00000223609 1909 ntBASIC24.64■■□□□ 1.53
Trav5-1A0A075B5Z7 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Trav5-1A0A075B5Z7 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Trav5-1A0A075B5Z7 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Trav5-1A0A075B5Z7 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
Trav5-1A0A075B5Z7 Gm42596-201ENSMUST00000196305 1958 ntBASIC24.5■■□□□ 1.51
Trav5-1A0A075B5Z7 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
Trav5-1A0A075B5Z7 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.5
Trav5-1A0A075B5Z7 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC24.39■■□□□ 1.49
Trav5-1A0A075B5Z7 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Trav5-1A0A075B5Z7 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC24.32■■□□□ 1.48
Trav5-1A0A075B5Z7 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Trav5-1A0A075B5Z7 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC24.29■■□□□ 1.48
Trav5-1A0A075B5Z7 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Trav5-1A0A075B5Z7 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC24.26■■□□□ 1.47
Trav5-1A0A075B5Z7 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Trav5-1A0A075B5Z7 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Trav5-1A0A075B5Z7 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC24.19■■□□□ 1.46
Trav5-1A0A075B5Z7 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC24.18■■□□□ 1.46
Trav5-1A0A075B5Z7 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Trav5-1A0A075B5Z7 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Trav5-1A0A075B5Z7 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
Trav5-1A0A075B5Z7 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC24.14■■□□□ 1.45
Retrieved 100 of 76,532 protein–RNA pairs in 82.7 ms