RNA–Protein interactions for RNA: YOR098C

NUP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP1, Length 3,231 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP1	YOR098C	TY1B-LR2	P0C2I5	1755 aa		5.82	□□□□□ -1.48
NUP1	YOR098C	TY1B-LR3	P0C2I6	1755 aa	Known RBP	5.82	□□□□□ -1.48
NUP1	YOR098C	TY1B-PR1	P0C2I9	1755 aa	Known RBP	5.82	□□□□□ -1.48
NUP1	YOR098C	TY1B-PR2	P0C2J0	1756 aa		5.82	□□□□□ -1.48
NUP1	YOR098C	TY1B-PR3	P0C2J1	1755 aa	Known RBP	5.82	□□□□□ -1.48
NUP1	YOR098C	TY1B-JR1	P47098	1755 aa		5.82	□□□□□ -1.48
NUP1	YOR098C	TY1B-ML2	Q03434	1755 aa	Known RBP	5.82	□□□□□ -1.48
NUP1	YOR098C	TY1B-ER1	Q03612	1755 aa		5.82	□□□□□ -1.48
NUP1	YOR098C	TY1B-ML1	Q04711	1755 aa	Known RBP	5.82	□□□□□ -1.48
NUP1	YOR098C	TY1B-GR2	Q12269	1755 aa		5.82	□□□□□ -1.48
NUP1	YOR098C	TY1B-OL	Q12273	1755 aa		5.82	□□□□□ -1.48
NUP1	YOR098C	TY1B-PL	Q12414	1755 aa	Known RBP	5.82	□□□□□ -1.48
NUP1	YOR098C	GEA2	P39993	1459 aa	Known RBP	5.82	□□□□□ -1.48
NUP1	YOR098C	YAR028W	P39548	234 aa		5.82	□□□□□ -1.48
NUP1	YOR098C	YEL025C	P39991	1188 aa		5.82	□□□□□ -1.48
NUP1	YOR098C	YER158C	P40095	573 aa		5.82	□□□□□ -1.48
NUP1	YOR098C	PCL7	P40186	285 aa		5.82	□□□□□ -1.48
NUP1	YOR098C	OCA1	P50946	238 aa	Predicted RBP	5.82	□□□□□ -1.48
NUP1	YOR098C	SGF73	P53165	657 aa		5.82	□□□□□ -1.48
NUP1	YOR098C	DUO1	P53168	247 aa	Known RBP	5.82	□□□□□ -1.48
NUP1	YOR098C	PIL1	P53252	339 aa	Known RBP	5.82	□□□□□ -1.48
NUP1	YOR098C	CIR2	Q08822	631 aa		5.82	□□□□□ -1.48
NUP1	YOR098C	GCN4	P03069	281 aa		5.81	□□□□□ -1.48
NUP1	YOR098C	SUI2	P20459	304 aa	Known RBP	5.81	□□□□□ -1.48
NUP1	YOR098C	MDL2	P33311	773 aa		5.81	□□□□□ -1.48
NUP1	YOR098C	CNS1	P33313	385 aa		5.81	□□□□□ -1.48
NUP1	YOR098C	AAD14	P42884	376 aa		5.81	□□□□□ -1.48
NUP1	YOR098C	VPS75	P53853	264 aa		5.81	□□□□□ -1.48
NUP1	YOR098C	VPS9	P54787	451 aa		5.81	□□□□□ -1.48
NUP1	YOR098C	ACM1	Q08981	209 aa		5.81	□□□□□ -1.48
NUP1	YOR098C	YLR149C	Q99296	730 aa		5.81	□□□□□ -1.48
NUP1	YOR098C	DIF1	O13577	133 aa		5.81	□□□□□ -1.48
NUP1	YOR098C	TUF1	P02992	437 aa	Known RBP	5.81	□□□□□ -1.48
NUP1	YOR098C	YEL076C-A	P0CX16	216 aa		5.81	□□□□□ -1.48
NUP1	YOR098C	YLR464W	P0CX17	216 aa		5.81	□□□□□ -1.48
NUP1	YOR098C	YCK2	P23292	546 aa	Known RBP	5.81	□□□□□ -1.48
NUP1	YOR098C	TFB1	P32776	642 aa		5.81	□□□□□ -1.48
NUP1	YOR098C	YKR078W	P36158	585 aa	Known RBP	5.81	□□□□□ -1.48
NUP1	YOR098C	NPR3	P38742	1146 aa		5.81	□□□□□ -1.48
NUP1	YOR098C	YEL076C	P39971	216 aa		5.81	□□□□□ -1.48
NUP1	YOR098C	NEO1	P40527	1151 aa		5.81	□□□□□ -1.48
NUP1	YOR098C	ARP4	P80428	489 aa		5.81	□□□□□ -1.48
NUP1	YOR098C	MEC3	Q02574	474 aa		5.81	□□□□□ -1.48
NUP1	YOR098C	YML119W	Q03208	357 aa		5.81	□□□□□ -1.48
NUP1	YOR098C	YKR018C	P36114	725 aa		5.8	□□□□□ -1.48
NUP1	YOR098C	TIF4631	P39935	952 aa	Known RBP	5.8	□□□□□ -1.48
NUP1	YOR098C	GDI1	P39958	451 aa	Known RBP	5.8	□□□□□ -1.48
NUP1	YOR098C	RTT105	P40063	208 aa		5.8	□□□□□ -1.48
NUP1	YOR098C	SPO22	P40511	975 aa		5.8	□□□□□ -1.48
NUP1	YOR098C	BSC5	P53755	489 aa		5.8	□□□□□ -1.48
NUP1	YOR098C	NOP15	P53927	220 aa	Predicted RBP	5.8	□□□□□ -1.48
NUP1	YOR098C	CIK1	Q01649	594 aa		5.8	□□□□□ -1.48
NUP1	YOR098C	AIM32	Q04689	311 aa		5.8	□□□□□ -1.48
NUP1	YOR098C	NSI1	Q12457	570 aa		5.8	□□□□□ -1.48
NUP1	YOR098C	FRE6	Q12473	712 aa		5.8	□□□□□ -1.48
NUP1	YOR098C	SAC6	P32599	642 aa	Known RBP	5.8	□□□□□ -1.48
NUP1	YOR098C	RIB7	P33312	244 aa		5.8	□□□□□ -1.48
NUP1	YOR098C	SLN1	P39928	1220 aa	Predicted RBP	5.8	□□□□□ -1.48
NUP1	YOR098C	MAD2	P40958	196 aa		5.8	□□□□□ -1.48
NUP1	YOR098C	SKP2	P42843	763 aa		5.8	□□□□□ -1.48
NUP1	YOR098C	PDH1	Q12428	516 aa	Known RBP	5.8	□□□□□ -1.48
NUP1	YOR098C	PCD1	Q12524	340 aa		5.8	□□□□□ -1.48
NUP1	YOR098C	GDB1	Q06625	1536 aa		5.8	□□□□□ -1.48
NUP1	YOR098C	STE50	P25344	346 aa		5.8	□□□□□ -1.48
NUP1	YOR098C	UGA3	P26370	528 aa		5.8	□□□□□ -1.48
NUP1	YOR098C	POT1	P27796	417 aa	Known RBP RIP-Chip data	5.8	□□□□□ -1.48	not detected
NUP1	YOR098C	QNS1	P38795	714 aa	Known RBP	5.8	□□□□□ -1.48
NUP1	YOR098C	RPT6	Q01939	405 aa	Known RBP	5.8	□□□□□ -1.48
NUP1	YOR098C	SWA2	Q06677	668 aa		5.8	□□□□□ -1.48
NUP1	YOR098C	IWR1	Q07532	353 aa	Predicted RBP	5.8	□□□□□ -1.48
NUP1	YOR098C	APL5	Q08951	932 aa	Known RBP	5.8	□□□□□ -1.48
NUP1	YOR098C	SUI3	P09064	285 aa	Known RBP	5.79	□□□□□ -1.48
NUP1	YOR098C	MIS1	P09440	975 aa	Known RBP	5.79	□□□□□ -1.48
NUP1	YOR098C	ACO1	P19414	778 aa	Known RBP RIP-Chip data	5.79	□□□□□ -1.48	not detected
NUP1	YOR098C	SIR1	P21691	654 aa		5.79	□□□□□ -1.48
NUP1	YOR098C	AMS1	P22855	1083 aa		5.79	□□□□□ -1.48
NUP1	YOR098C	ADK2	P26364	225 aa		5.79	□□□□□ -1.48
NUP1	YOR098C	DLD1	P32891	587 aa		5.79	□□□□□ -1.48
NUP1	YOR098C	REI1	P38344	393 aa	Predicted RBP	5.79	□□□□□ -1.48
NUP1	YOR098C	NOG2	P53742	486 aa	Known RBP	5.79	□□□□□ -1.48
NUP1	YOR098C	ELA1	P53861	379 aa	Predicted RBP	5.79	□□□□□ -1.48
NUP1	YOR098C	SFB2	P53953	876 aa		5.79	□□□□□ -1.48
NUP1	YOR098C	VTH1	P40438	1549 aa		5.79	□□□□□ -1.48
NUP1	YOR098C	VTH2	P40890	1549 aa		5.79	□□□□□ -1.48
NUP1	YOR098C	RPL19A	P0CX82	189 aa	Known RBP	5.79	□□□□□ -1.48
NUP1	YOR098C	RPL19B	P0CX83	189 aa	Predicted RBP	5.79	□□□□□ -1.48
NUP1	YOR098C	RPN2	P32565	945 aa	Known RBP	5.79	□□□□□ -1.48
NUP1	YOR098C	TEF4	P36008	412 aa	Known RBP	5.79	□□□□□ -1.48
NUP1	YOR098C	GIC1	P38785	314 aa		5.79	□□□□□ -1.48
NUP1	YOR098C	SSZ1	P38788	538 aa	Known RBP	5.79	□□□□□ -1.48
NUP1	YOR098C	SHR5	P41912	237 aa		5.79	□□□□□ -1.48
NUP1	YOR098C	YFL052W	P43551	465 aa		5.79	□□□□□ -1.48
NUP1	YOR098C	FYV8	P46949	817 aa	Known RBP	5.79	□□□□□ -1.48
NUP1	YOR098C	YJR039W	P47107	1121 aa		5.79	□□□□□ -1.48
NUP1	YOR098C	PSP1	P50896	841 aa	Known RBP	5.79	□□□□□ -1.48
NUP1	YOR098C	ALF1	P53904	254 aa		5.79	□□□□□ -1.48
NUP1	YOR098C	ALG6	Q12001	544 aa	Known RBP	5.79	□□□□□ -1.48
NUP1	YOR098C	SNT2	P53127	1403 aa		5.79	□□□□□ -1.48
NUP1	YOR098C	MRPL16	P38064	232 aa		5.78	□□□□□ -1.48
NUP1	YOR098C	UGA2	P38067	497 aa		5.78	□□□□□ -1.48

Retrieved 100 of 5,963 RNA–protein pairs in 83.4 ms