RNA–Protein interactions for RNA: YDR078C

SHU2, Transcript of Component of Shu complex (aka PCSS complex), yeast

Gene SHU2, Length 672 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHU2	YDR078C	CBP3	P21560	335 aa		4.7	□□□□□ -1.66
SHU2	YDR078C	CWH43	P25618	953 aa		4.7	□□□□□ -1.66
SHU2	YDR078C	SSH4	P32343	579 aa		4.7	□□□□□ -1.66
SHU2	YDR078C	TRM2	P33753	639 aa		4.7	□□□□□ -1.66
SHU2	YDR078C	APM3	P38153	483 aa		4.7	□□□□□ -1.66
SHU2	YDR078C	BAP3	P41815	604 aa		4.7	□□□□□ -1.66
SHU2	YDR078C	MTL1	P53214	551 aa		4.7	□□□□□ -1.66
SHU2	YDR078C	YNR071C	P53757	342 aa		4.7	□□□□□ -1.66
SHU2	YDR078C	TRI1	Q05024	226 aa		4.7	□□□□□ -1.66
SHU2	YDR078C	TMA10	Q06177	86 aa		4.7	□□□□□ -1.66
SHU2	YDR078C	DIA2	Q08496	732 aa	Predicted RBP	4.7	□□□□□ -1.66
SHU2	YDR078C	DBP10	Q12389	995 aa	Known RBP	4.7	□□□□□ -1.66
SHU2	YDR078C	RPS9B	P05755	195 aa	Known RBP	4.69	□□□□□ -1.66
SHU2	YDR078C	TRP4	P07285	380 aa	Predicted RBP	4.69	□□□□□ -1.66
SHU2	YDR078C	HMG2	P12684	1045 aa		4.69	□□□□□ -1.66
SHU2	YDR078C	PEX1	P24004	1043 aa		4.69	□□□□□ -1.66
SHU2	YDR078C	RMA1	P36001	430 aa	Known RBP	4.69	□□□□□ -1.66
SHU2	YDR078C	YLF2	P38746	405 aa		4.69	□□□□□ -1.66
SHU2	YDR078C	SPC72	P39723	622 aa		4.69	□□□□□ -1.66
SHU2	YDR078C	VID27	P40157	782 aa		4.69	□□□□□ -1.66
SHU2	YDR078C	YIR042C	P40586	236 aa		4.69	□□□□□ -1.66
SHU2	YDR078C	ERR3	P42222	437 aa		4.69	□□□□□ -1.66
SHU2	YDR078C	AMA1	P50082	593 aa		4.69	□□□□□ -1.66
SHU2	YDR078C	SQS1	P53866	767 aa	Known RBP	4.69	□□□□□ -1.66
SHU2	YDR078C	EIS1	Q05050	843 aa	Known RBP	4.69	□□□□□ -1.66
SHU2	YDR078C	THI22	Q06490	572 aa		4.69	□□□□□ -1.66
SHU2	YDR078C	MCH5	Q08777	521 aa		4.69	□□□□□ -1.66
SHU2	YDR078C	CDS1	P38221	457 aa		4.68	□□□□□ -1.66
SHU2	YDR078C	CCT3	P39077	534 aa	Known RBP	4.68	□□□□□ -1.66
SHU2	YDR078C	HOS4	P40480	1083 aa		4.68	□□□□□ -1.66
SHU2	YDR078C	MSE1	P48525	536 aa		4.68	□□□□□ -1.66
SHU2	YDR078C	GTR1	Q00582	310 aa		4.68	□□□□□ -1.66
SHU2	YDR078C	BLS1	Q06071	122 aa		4.68	□□□□□ -1.66
SHU2	YDR078C	URA3	P03962	267 aa		4.67	□□□□□ -1.66
SHU2	YDR078C	MET3	P08536	511 aa		4.67	□□□□□ -1.66
SHU2	YDR078C	SEC15	P22224	910 aa		4.67	□□□□□ -1.66
SHU2	YDR078C	YBR053C	P38235	358 aa		4.67	□□□□□ -1.66
SHU2	YDR078C	FMO1	P38866	432 aa		4.67	□□□□□ -1.66
SHU2	YDR078C	STT3	P39007	718 aa	Known RBP	4.67	□□□□□ -1.66
SHU2	YDR078C	NUP60	P39705	539 aa		4.67	□□□□□ -1.66
SHU2	YDR078C	IML2	P47031	731 aa		4.67	□□□□□ -1.66
SHU2	YDR078C	TAH11	P47112	604 aa		4.67	□□□□□ -1.66
SHU2	YDR078C	BUL1	P48524	976 aa		4.67	□□□□□ -1.66
SHU2	YDR078C	YDL183C	P48569	320 aa		4.67	□□□□□ -1.66
SHU2	YDR078C	MUP1	P50276	574 aa		4.67	□□□□□ -1.66
SHU2	YDR078C	CPR6	P53691	371 aa	Known RBP	4.67	□□□□□ -1.66
SHU2	YDR078C	TRS130	Q03660	1102 aa		4.67	□□□□□ -1.66
SHU2	YDR078C	DLT1	Q04216	342 aa		4.67	□□□□□ -1.66
SHU2	YDR078C	SSP2	Q08646	371 aa		4.67	□□□□□ -1.66
SHU2	YDR078C	HOS1	Q12214	470 aa		4.67	□□□□□ -1.66
SHU2	YDR078C	PHO5	P00635	467 aa		4.66	□□□□□ -1.66
SHU2	YDR078C	CAF20	P12962	161 aa	Known RBP	4.66	□□□□□ -1.66
SHU2	YDR078C	ARG1	P22768	420 aa		4.66	□□□□□ -1.66
SHU2	YDR078C	DCG1	P32460	244 aa		4.66	□□□□□ -1.66
SHU2	YDR078C	BEM3	P32873	1128 aa		4.66	□□□□□ -1.66
SHU2	YDR078C	CRG1	P38892	291 aa	RIP-Chip data	4.66	□□□□□ -1.66	not detected
SHU2	YDR078C	FTR1	P40088	404 aa		4.66	□□□□□ -1.66
SHU2	YDR078C	ELO3	P40319	345 aa		4.66	□□□□□ -1.66
SHU2	YDR078C	MNN10	P50108	393 aa	Known RBP	4.66	□□□□□ -1.66
SHU2	YDR078C	MDR1	P53258	950 aa		4.66	□□□□□ -1.66
SHU2	YDR078C	SUN4	P53616	420 aa		4.66	□□□□□ -1.66
SHU2	YDR078C	RGC1	Q06108	1083 aa	Known RBP	4.66	□□□□□ -1.66
SHU2	YDR078C	YCG1	Q06680	1035 aa		4.66	□□□□□ -1.66
SHU2	YDR078C	AIM41	Q12032	185 aa		4.66	□□□□□ -1.66
SHU2	YDR078C	TUF1	P02992	437 aa	Known RBP	4.65	□□□□□ -1.67
SHU2	YDR078C	GFA1	P14742	717 aa	Known RBP	4.65	□□□□□ -1.67
SHU2	YDR078C	TUP1	P16649	713 aa		4.65	□□□□□ -1.67
SHU2	YDR078C	SIR1	P21691	654 aa		4.65	□□□□□ -1.67
SHU2	YDR078C	MCM3	P24279	971 aa	Known RBP	4.65	□□□□□ -1.67
SHU2	YDR078C	FEN2	P25621	512 aa	Known RBP	4.65	□□□□□ -1.67
SHU2	YDR078C	PSY4	P38193	441 aa		4.65	□□□□□ -1.67
SHU2	YDR078C	PPE1	P38796	400 aa		4.65	□□□□□ -1.67
SHU2	YDR078C	PIG2	P40187	538 aa		4.65	□□□□□ -1.67
SHU2	YDR078C	YIL077C	P40508	320 aa		4.65	□□□□□ -1.67
SHU2	YDR078C	MCM6	P53091	1017 aa	Known RBP	4.65	□□□□□ -1.67
SHU2	YDR078C	FDC1	Q03034	503 aa		4.65	□□□□□ -1.67
SHU2	YDR078C	YFT2	Q06676	274 aa		4.65	□□□□□ -1.67
SHU2	YDR078C	CRD1	Q07560	283 aa		4.65	□□□□□ -1.67
SHU2	YDR078C	AAD4	Q07747	329 aa		4.65	□□□□□ -1.67
SHU2	YDR078C	SSM4	P40318	1319 aa		4.65	□□□□□ -1.67
SHU2	YDR078C	MTF2	P10849	440 aa		4.64	□□□□□ -1.67
SHU2	YDR078C	YCL049C	P25577	312 aa		4.64	□□□□□ -1.67
SHU2	YDR078C	MVD1	P32377	396 aa	Known RBP	4.64	□□□□□ -1.67
SHU2	YDR078C	FRD1	P32614	470 aa	Known RBP	4.64	□□□□□ -1.67
SHU2	YDR078C	BCS1	P32839	456 aa		4.64	□□□□□ -1.67
SHU2	YDR078C	XRS2	P33301	854 aa		4.64	□□□□□ -1.67
SHU2	YDR078C	COS111	P38308	924 aa		4.64	□□□□□ -1.67
SHU2	YDR078C	BCD1	P38772	366 aa		4.64	□□□□□ -1.67
SHU2	YDR078C	PUG1	P40100	303 aa		4.64	□□□□□ -1.67
SHU2	YDR078C	GSM1	P42950	618 aa		4.64	□□□□□ -1.67
SHU2	YDR078C	ARC35	P53731	342 aa	Known RBP	4.64	□□□□□ -1.67
SHU2	YDR078C	YML122C	Q03207	126 aa		4.64	□□□□□ -1.67
SHU2	YDR078C	IWR1	Q07532	353 aa	Predicted RBP	4.64	□□□□□ -1.67
SHU2	YDR078C	PMA1	P05030	918 aa	Known RBP	4.63	□□□□□ -1.67
SHU2	YDR078C	MIS1	P09440	975 aa	Known RBP	4.63	□□□□□ -1.67
SHU2	YDR078C	PRP28	P23394	588 aa		4.63	□□□□□ -1.67
SHU2	YDR078C	SFB3	P38810	929 aa		4.63	□□□□□ -1.67
SHU2	YDR078C	RFX1	P48743	811 aa		4.63	□□□□□ -1.67
SHU2	YDR078C	UBA2	P52488	636 aa		4.63	□□□□□ -1.67
SHU2	YDR078C	UBC11	P52492	156 aa		4.63	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 86.7 ms