RNA–Protein interactions for RNA: YML029W

USA1, Transcript of Scaffold subunit of the Hrd1p ubiquitin ligase, yeast

Gene USA1, Length 2,517 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
USA1	YML029W	MRP4	P32902	394 aa		4.11	□□□□□ -1.75
USA1	YML029W	JNM1	P36224	373 aa		4.11	□□□□□ -1.75
USA1	YML029W	PTC4	P38089	393 aa		4.11	□□□□□ -1.75
USA1	YML029W	MCX1	P38323	520 aa	Predicted RBP	4.11	□□□□□ -1.75
USA1	YML029W	CAJ1	P39101	391 aa		4.11	□□□□□ -1.75
USA1	YML029W	XDJ1	P39102	459 aa		4.11	□□□□□ -1.75
USA1	YML029W	SEC9	P40357	651 aa		4.11	□□□□□ -1.75
USA1	YML029W	EFM4	P40516	257 aa		4.11	□□□□□ -1.75
USA1	YML029W	APT1	P49435	187 aa	Known RBP	4.11	□□□□□ -1.75
USA1	YML029W	SPC98	P53540	846 aa		4.11	□□□□□ -1.75
USA1	YML029W	ATG16	Q03818	150 aa		4.11	□□□□□ -1.75
USA1	YML029W	YML082W	Q04533	649 aa	Known RBP	4.11	□□□□□ -1.75
USA1	YML029W	YDR344C	Q05510	147 aa		4.11	□□□□□ -1.75
USA1	YML029W	GPM2	Q12008	311 aa		4.11	□□□□□ -1.75
USA1	YML029W	REC8	Q12188	680 aa		4.11	□□□□□ -1.75
USA1	YML029W	APM4	Q99186	491 aa		4.11	□□□□□ -1.75
USA1	YML029W	YLR422W	Q06409	1932 aa		4.1	□□□□□ -1.75
USA1	YML029W	ADE4	P04046	510 aa	Known RBP	4.1	□□□□□ -1.75
USA1	YML029W	PET123	P17558	318 aa		4.1	□□□□□ -1.75
USA1	YML029W	IME1	P21190	360 aa		4.1	□□□□□ -1.75
USA1	YML029W	CDC11	P32458	415 aa		4.1	□□□□□ -1.75
USA1	YML029W	TBS1	P38114	1094 aa		4.1	□□□□□ -1.75
USA1	YML029W	FMP10	P40098	244 aa		4.1	□□□□□ -1.75
USA1	YML029W	MVP1	P40959	511 aa	Known RBP	4.1	□□□□□ -1.75
USA1	YML029W	SBE2	P42223	864 aa	Known RBP	4.1	□□□□□ -1.75
USA1	YML029W	RPL22B	P56628	122 aa	Known RBP	4.1	□□□□□ -1.75
USA1	YML029W	YPL062W	Q02781	134 aa		4.1	□□□□□ -1.75
USA1	YML029W	AIM32	Q04689	311 aa		4.1	□□□□□ -1.75
USA1	YML029W	RPL4A	P10664	362 aa	Known RBP	4.1	□□□□□ -1.75
USA1	YML029W	MTF1	P14908	341 aa	Known RBP	4.1	□□□□□ -1.75
USA1	YML029W	VBA3	P25594	458 aa		4.1	□□□□□ -1.75
USA1	YML029W	YEL043W	P32618	956 aa		4.1	□□□□□ -1.75
USA1	YML029W	TRZ1	P36159	838 aa	Predicted RBP	4.1	□□□□□ -1.75
USA1	YML029W	VBA5	P36172	582 aa		4.1	□□□□□ -1.75
USA1	YML029W	FUI1	P38196	639 aa		4.1	□□□□□ -1.75
USA1	YML029W	GGA2	P38817	585 aa	Known RBP	4.1	□□□□□ -1.75
USA1	YML029W	GEM1	P39722	662 aa		4.1	□□□□□ -1.75
USA1	YML029W	MDJ2	P42834	146 aa		4.1	□□□□□ -1.75
USA1	YML029W	RPL4B	P49626	362 aa	Known RBP	4.1	□□□□□ -1.75
USA1	YML029W	YGR111W	P53265	400 aa		4.1	□□□□□ -1.75
USA1	YML029W	CEG1	Q01159	459 aa	Predicted RBP	4.1	□□□□□ -1.75
USA1	YML029W	EMI2	Q04409	500 aa	Known RBP	4.1	□□□□□ -1.75
USA1	YML029W	PIG1	Q06216	648 aa		4.1	□□□□□ -1.75
USA1	YML029W	LEA1	Q08963	238 aa	Predicted RBP	4.1	□□□□□ -1.75
USA1	YML029W	MMP1	Q12372	583 aa		4.1	□□□□□ -1.75
USA1	YML029W	STB3	Q12427	513 aa		4.1	□□□□□ -1.75
USA1	YML029W	RRT12	P25381	491 aa		4.09	□□□□□ -1.75
USA1	YML029W	URK1	P27515	501 aa		4.09	□□□□□ -1.75
USA1	YML029W	GUT1	P32190	709 aa		4.09	□□□□□ -1.75
USA1	YML029W	DSS4	P32601	143 aa		4.09	□□□□□ -1.75
USA1	YML029W	SET5	P38890	526 aa	Known RBP	4.09	□□□□□ -1.75
USA1	YML029W	YMR124W	P39523	943 aa	Known RBP	4.09	□□□□□ -1.75
USA1	YML029W	PEX31	P53203	462 aa		4.09	□□□□□ -1.75
USA1	YML029W	BTN2	P53286	410 aa		4.09	□□□□□ -1.75
USA1	YML029W	BOP3	P53958	396 aa		4.09	□□□□□ -1.75
USA1	YML029W	YVH1	Q02256	364 aa	Known RBP	4.09	□□□□□ -1.75
USA1	YML029W	CEF1	Q03654	590 aa	Predicted RBP	4.09	□□□□□ -1.75
USA1	YML029W	VAC14	Q06708	880 aa		4.09	□□□□□ -1.75
USA1	YML029W	SAT4	P25333	603 aa	Known RBP	4.09	□□□□□ -1.76
USA1	YML029W	HSP78	P33416	811 aa		4.09	□□□□□ -1.76
USA1	YML029W	RCK2	P38623	610 aa		4.09	□□□□□ -1.76
USA1	YML029W	PCM1	P38628	557 aa	Known RBP	4.09	□□□□□ -1.76
USA1	YML029W	TCD1	P38756	429 aa		4.09	□□□□□ -1.76
USA1	YML029W	LYS9	P38999	446 aa		4.09	□□□□□ -1.76
USA1	YML029W	FHL1	P39521	936 aa		4.09	□□□□□ -1.76
USA1	YML029W	BTT1	P40314	149 aa	Predicted RBP	4.09	□□□□□ -1.76
USA1	YML029W	SNZ3	P43545	298 aa		4.09	□□□□□ -1.76
USA1	YML029W	COP1	P53622	1201 aa	Known RBP	4.09	□□□□□ -1.76
USA1	YML029W	YNR014W	P53719	212 aa		4.09	□□□□□ -1.76
USA1	YML029W	SNZ2	P53824	298 aa		4.09	□□□□□ -1.76
USA1	YML029W	JJJ1	P53863	590 aa		4.09	□□□□□ -1.76
USA1	YML029W	ARO80	Q04052	950 aa		4.09	□□□□□ -1.76
USA1	YML029W	SOV1	Q04748	898 aa		4.09	□□□□□ -1.76
USA1	YML029W	SML1	Q04964	104 aa		4.09	□□□□□ -1.76
USA1	YML029W	GRX8	Q05926	109 aa		4.09	□□□□□ -1.76
USA1	YML029W	SIL1	Q08199	421 aa		4.09	□□□□□ -1.76
USA1	YML029W	PET111	P08468	800 aa		4.08	□□□□□ -1.76
USA1	YML029W	PMS1	P14242	873 aa		4.08	□□□□□ -1.76
USA1	YML029W	DAL2	P25335	343 aa		4.08	□□□□□ -1.76
USA1	YML029W	ISF1	P32488	338 aa		4.08	□□□□□ -1.76
USA1	YML029W	CBF2	P32504	956 aa		4.08	□□□□□ -1.76
USA1	YML029W	EXO5	P38289	585 aa		4.08	□□□□□ -1.76
USA1	YML029W	ATG12	P38316	186 aa		4.08	□□□□□ -1.76
USA1	YML029W	YHR219W	P38900	624 aa		4.08	□□□□□ -1.76
USA1	YML029W	ERP2	P39704	215 aa		4.08	□□□□□ -1.76
USA1	YML029W	MOB1	P40484	314 aa		4.08	□□□□□ -1.76
USA1	YML029W	MAL13	P53338	473 aa		4.08	□□□□□ -1.76
USA1	YML029W	NGL3	Q03210	505 aa		4.08	□□□□□ -1.76
USA1	YML029W	SNU56	Q03782	492 aa	Known RBP	4.08	□□□□□ -1.76
USA1	YML029W	TAF9	Q05027	157 aa		4.08	□□□□□ -1.76
USA1	YML029W	CDD1	Q06549	142 aa		4.08	□□□□□ -1.76
USA1	YML029W	YLR001C	Q07895	862 aa		4.08	□□□□□ -1.76
USA1	YML029W	FMP25	Q08023	583 aa		4.08	□□□□□ -1.76
USA1	YML029W	AIM39	Q08223	395 aa		4.08	□□□□□ -1.76
USA1	YML029W	MCM16	Q12262	181 aa		4.08	□□□□□ -1.76
USA1	YML029W	YEL077C	Q3E7X8	1277 aa		4.08	□□□□□ -1.76
USA1	YML029W	VPS5	Q92331	675 aa		4.08	□□□□□ -1.76
USA1	YML029W	STE11	P23561	717 aa		4.07	□□□□□ -1.76
USA1	YML029W	CAD1	P24813	409 aa	Known RBP	4.07	□□□□□ -1.76
USA1	YML029W	YKL050C	P35736	922 aa		4.07	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 13.4 ms