RNA–Protein interactions for RNA: YLR229C

CDC42, Transcript of Small rho-like GTPase, yeast

Gene CDC42, Length 576 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC42	YLR229C	YGR125W	P53273	1036 aa		4.74	□□□□□ -1.65
CDC42	YLR229C	SDA1	P53313	767 aa	Known RBP	4.74	□□□□□ -1.65
CDC42	YLR229C	BNI5	P53890	448 aa	Known RBP	4.74	□□□□□ -1.65
CDC42	YLR229C	VTC3	Q02725	835 aa		4.74	□□□□□ -1.65
CDC42	YLR229C	VPS72	Q03388	795 aa		4.74	□□□□□ -1.65
CDC42	YLR229C	EAF1	Q06337	982 aa		4.74	□□□□□ -1.65
CDC42	YLR229C	VIP1	Q06685	1146 aa	Known RBP	4.74	□□□□□ -1.65
CDC42	YLR229C	MDM38	Q08179	573 aa		4.74	□□□□□ -1.65
CDC42	YLR229C	TUS1	Q06412	1307 aa		4.73	□□□□□ -1.65
CDC42	YLR229C	FOB1	O13329	566 aa		4.73	□□□□□ -1.65
CDC42	YLR229C	CDC8	P00572	216 aa		4.73	□□□□□ -1.65
CDC42	YLR229C	PMA1	P05030	918 aa	Known RBP	4.73	□□□□□ -1.65
CDC42	YLR229C	CDC37	P06101	506 aa	Known RBP	4.73	□□□□□ -1.65
CDC42	YLR229C	SBP1	P10080	294 aa	Known RBP	4.73	□□□□□ -1.65
CDC42	YLR229C	RPL8A	P17076	256 aa	Known RBP	4.73	□□□□□ -1.65
CDC42	YLR229C	SAM2	P19358	384 aa	Known RBP	4.73	□□□□□ -1.65
CDC42	YLR229C	NAM7	P30771	971 aa	Known RBP	4.73	□□□□□ -1.65
CDC42	YLR229C	STO1	P34160	861 aa	Known RBP	4.73	□□□□□ -1.65
CDC42	YLR229C	YET1	P35723	206 aa		4.73	□□□□□ -1.65
CDC42	YLR229C	YHL012W	P38709	493 aa		4.73	□□□□□ -1.65
CDC42	YLR229C	CTM1	P38818	585 aa		4.73	□□□□□ -1.65
CDC42	YLR229C	CTK3	P46963	296 aa	Predicted RBP	4.73	□□□□□ -1.65
CDC42	YLR229C	HUL5	P53119	910 aa		4.73	□□□□□ -1.65
CDC42	YLR229C	ENV11	P53246	860 aa		4.73	□□□□□ -1.65
CDC42	YLR229C	CAF130	P53280	1122 aa	Predicted RBP	4.73	□□□□□ -1.65
CDC42	YLR229C	LSB1	P53281	241 aa		4.73	□□□□□ -1.65
CDC42	YLR229C	TRM44	Q02648	567 aa	Known RBP	4.73	□□□□□ -1.65
CDC42	YLR229C	GYL1	Q04322	720 aa		4.73	□□□□□ -1.65
CDC42	YLR229C	VAC14	Q06708	880 aa		4.73	□□□□□ -1.65
CDC42	YLR229C	YPL225W	Q08971	146 aa	Known RBP	4.73	□□□□□ -1.65
CDC42	YLR229C	APL4	Q12028	832 aa		4.73	□□□□□ -1.65
CDC42	YLR229C	NUR1	Q12066	484 aa		4.73	□□□□□ -1.65
CDC42	YLR229C	SMC6	Q12749	1114 aa		4.73	□□□□□ -1.65
CDC42	YLR229C	THS1	P04801	734 aa	Known RBP	4.72	□□□□□ -1.65
CDC42	YLR229C	RAD3	P06839	778 aa		4.72	□□□□□ -1.65
CDC42	YLR229C	GAL11	P19659	1081 aa		4.72	□□□□□ -1.65
CDC42	YLR229C	RAD53	P22216	821 aa		4.72	□□□□□ -1.65
CDC42	YLR229C	SRO9	P25567	434 aa	Known RBP	4.72	□□□□□ -1.65
CDC42	YLR229C	PWP2	P25635	923 aa	Known RBP	4.72	□□□□□ -1.65
CDC42	YLR229C	SWE1	P32944	819 aa		4.72	□□□□□ -1.65
CDC42	YLR229C	WHI3	P34761	661 aa	Known RBP	4.72	□□□□□ -1.65
CDC42	YLR229C	KAE1	P36132	386 aa		4.72	□□□□□ -1.65
CDC42	YLR229C	PXL1	P36166	706 aa		4.72	□□□□□ -1.65
CDC42	YLR229C	GGA2	P38817	585 aa	Known RBP	4.72	□□□□□ -1.65
CDC42	YLR229C	SKN7	P38889	622 aa		4.72	□□□□□ -1.65
CDC42	YLR229C	RPN3	P40016	523 aa	Known RBP	4.72	□□□□□ -1.65
CDC42	YLR229C	HOS4	P40480	1083 aa		4.72	□□□□□ -1.65
CDC42	YLR229C	TRS85	P46944	698 aa		4.72	□□□□□ -1.65
CDC42	YLR229C	ILM1	P47155	203 aa		4.72	□□□□□ -1.65
CDC42	YLR229C	TNA1	P53322	534 aa		4.72	□□□□□ -1.65
CDC42	YLR229C	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	4.72	□□□□□ -1.65	not detected
CDC42	YLR229C	RPN4	Q03465	531 aa		4.72	□□□□□ -1.65
CDC42	YLR229C	EBS1	Q03466	884 aa	Known RBP	4.72	□□□□□ -1.65
CDC42	YLR229C	STE23	Q06010	1027 aa		4.72	□□□□□ -1.65
CDC42	YLR229C	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	4.72	□□□□□ -1.65	not detected
CDC42	YLR229C	RSB1	Q08417	382 aa		4.72	□□□□□ -1.65
CDC42	YLR229C	FLC1	Q08967	793 aa		4.72	□□□□□ -1.65
CDC42	YLR229C	TUB2	P02557	457 aa	Known RBP	4.71	□□□□□ -1.66
CDC42	YLR229C	RPB2	P08518	1224 aa	Known RBP	4.71	□□□□□ -1.66
CDC42	YLR229C	YER152C	P10356	443 aa		4.71	□□□□□ -1.66
CDC42	YLR229C	CKA2	P19454	339 aa		4.71	□□□□□ -1.66
CDC42	YLR229C	YCK2	P23292	546 aa	Known RBP	4.71	□□□□□ -1.66
CDC42	YLR229C	GSY1	P23337	708 aa		4.71	□□□□□ -1.66
CDC42	YLR229C	CDC10	P25342	322 aa	Known RBP	4.71	□□□□□ -1.66
CDC42	YLR229C	RRP43	P25359	394 aa	Predicted RBP	4.71	□□□□□ -1.66
CDC42	YLR229C	SEC65	P29478	273 aa		4.71	□□□□□ -1.66
CDC42	YLR229C	PSO2	P30620	661 aa		4.71	□□□□□ -1.66
CDC42	YLR229C	YSC84	P32793	468 aa		4.71	□□□□□ -1.66
CDC42	YLR229C	RAD5	P32849	1169 aa	Predicted RBP	4.71	□□□□□ -1.66
CDC42	YLR229C	PET10	P36139	283 aa		4.71	□□□□□ -1.66
CDC42	YLR229C	STV1	P37296	890 aa		4.71	□□□□□ -1.66
CDC42	YLR229C	PCH2	P38126	564 aa		4.71	□□□□□ -1.66
CDC42	YLR229C	OLA1	P38219	394 aa	Known RBP	4.71	□□□□□ -1.66
CDC42	YLR229C	YSW1	P38280	609 aa		4.71	□□□□□ -1.66
CDC42	YLR229C	ERG7	P38604	731 aa		4.71	□□□□□ -1.66
CDC42	YLR229C	KEL1	P38853	1164 aa	Known RBP	4.71	□□□□□ -1.66
CDC42	YLR229C	ALR2	P43553	858 aa		4.71	□□□□□ -1.66
CDC42	YLR229C	AIP1	P46680	615 aa	Known RBP	4.71	□□□□□ -1.66
CDC42	YLR229C	SGM1	P47166	707 aa		4.71	□□□□□ -1.66
CDC42	YLR229C	VPS4	P52917	437 aa		4.71	□□□□□ -1.66
CDC42	YLR229C	CBK1	P53894	756 aa		4.71	□□□□□ -1.66
CDC42	YLR229C	SRP1	Q02821	542 aa	Known RBP	4.71	□□□□□ -1.66
CDC42	YLR229C	YPL034W	Q03083	165 aa		4.71	□□□□□ -1.66
CDC42	YLR229C	BUL2	Q03758	920 aa	Known RBP	4.71	□□□□□ -1.66
CDC42	YLR229C	ADY4	Q05955	493 aa		4.71	□□□□□ -1.66
CDC42	YLR229C	SUE1	Q06524	206 aa		4.71	□□□□□ -1.66
CDC42	YLR229C	OPY2	Q06810	360 aa		4.71	□□□□□ -1.66
CDC42	YLR229C	NOP6	Q07623	225 aa	Known RBP	4.71	□□□□□ -1.66
CDC42	YLR229C	MCA1	Q08601	432 aa		4.71	□□□□□ -1.66
CDC42	YLR229C	PLP2	Q12017	286 aa		4.71	□□□□□ -1.66
CDC42	YLR229C	JIP3	O13555	125 aa		4.7	□□□□□ -1.66
CDC42	YLR229C	CBP1	P07252	654 aa		4.7	□□□□□ -1.66
CDC42	YLR229C	HPR1	P17629	752 aa	Known RBP	4.7	□□□□□ -1.66
CDC42	YLR229C	CKI1	P20485	582 aa		4.7	□□□□□ -1.66
CDC42	YLR229C	MSB1	P21339	1137 aa	Known RBP	4.7	□□□□□ -1.66
CDC42	YLR229C	ISY1	P21374	235 aa	Predicted RBP	4.7	□□□□□ -1.66
CDC42	YLR229C	SPO11	P23179	398 aa		4.7	□□□□□ -1.66
CDC42	YLR229C	AAR2	P32357	355 aa	Predicted RBP	4.7	□□□□□ -1.66
CDC42	YLR229C	SIC1	P38634	284 aa		4.7	□□□□□ -1.66
CDC42	YLR229C	MIP6	P38760	659 aa	Known RBP	4.7	□□□□□ -1.66

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