RNA–Protein interactions for RNA: YKL173W

SNU114, Transcript of GTPase component of U5 snRNP involved in mRNA splicing via spliceosome, yeast

Gene SNU114, Length 3,027 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNU114	YKL173W	EAF5	P39995	279 aa		2.73	□□□□□ -1.97
SNU114	YKL173W	NDE1	P40215	560 aa		2.73	□□□□□ -1.97
SNU114	YKL173W	YIL108W	P40483	696 aa	Known RBP	2.73	□□□□□ -1.97
SNU114	YKL173W	RLP7	P40693	322 aa	Known RBP	2.73	□□□□□ -1.97
SNU114	YKL173W	UPF3	P48412	387 aa	Known RBP	2.73	□□□□□ -1.97
SNU114	YKL173W	UBA2	P52488	636 aa		2.73	□□□□□ -1.97
SNU114	YKL173W	TY1B-BR	Q12193	1756 aa		2.73	□□□□□ -1.97
SNU114	YKL173W	TY1B-GR3	Q12316	1755 aa		2.73	□□□□□ -1.97
SNU114	YKL173W	TY1B-OR	Q92393	1755 aa		2.73	□□□□□ -1.97
SNU114	YKL173W	PDR15	Q04182	1529 aa	Known RBP	2.73	□□□□□ -1.97
SNU114	YKL173W	EFT1	P32324	842 aa	Known RBP	2.73	□□□□□ -1.97
SNU114	YKL173W	YKR018C	P36114	725 aa		2.73	□□□□□ -1.97
SNU114	YKL173W	HSL7	P38274	827 aa		2.73	□□□□□ -1.97
SNU114	YKL173W	TDA3	P38758	523 aa		2.73	□□□□□ -1.97
SNU114	YKL173W	SSZ1	P38788	538 aa	Known RBP	2.73	□□□□□ -1.97
SNU114	YKL173W	MNT3	P40549	630 aa		2.73	□□□□□ -1.97
SNU114	YKL173W	NOG2	P53742	486 aa	Known RBP	2.73	□□□□□ -1.97
SNU114	YKL173W	DUS1	P53759	423 aa	Known RBP	2.73	□□□□□ -1.97
SNU114	YKL173W	HLR1	Q04429	423 aa		2.73	□□□□□ -1.97
SNU114	YKL173W	SDH5	Q08230	162 aa		2.73	□□□□□ -1.97
SNU114	YKL173W	TRM11	Q12463	433 aa		2.73	□□□□□ -1.97
SNU114	YKL173W	RTP1	Q12751	981 aa		2.73	□□□□□ -1.97
SNU114	YKL173W	BPT1	P14772	1559 aa		2.73	□□□□□ -1.97
SNU114	YKL173W	RPO31	P04051	1460 aa		2.73	□□□□□ -1.97
SNU114	YKL173W	GLN4	P13188	809 aa	Known RBP	2.72	□□□□□ -1.97
SNU114	YKL173W	CYS3	P31373	394 aa	Known RBP	2.72	□□□□□ -1.97
SNU114	YKL173W	RIM4	P38741	713 aa		2.72	□□□□□ -1.97
SNU114	YKL173W	CEP3	P40969	608 aa		2.72	□□□□□ -1.97
SNU114	YKL173W	SLD3	P53135	668 aa		2.72	□□□□□ -1.97
SNU114	YKL173W	ARC35	P53731	342 aa	Known RBP	2.72	□□□□□ -1.97
SNU114	YKL173W	BRE5	P53741	515 aa	Known RBP	2.72	□□□□□ -1.97
SNU114	YKL173W	ESF2	P53743	316 aa	Known RBP	2.72	□□□□□ -1.97
SNU114	YKL173W	VPS30	Q02948	557 aa		2.72	□□□□□ -1.97
SNU114	YKL173W	PSR2	Q07949	397 aa		2.72	□□□□□ -1.97
SNU114	YKL173W	YPR027C	Q12079	277 aa		2.72	□□□□□ -1.97
SNU114	YKL173W	MSM1	P22438	575 aa		2.72	□□□□□ -1.97
SNU114	YKL173W	IMP2'	P32351	346 aa		2.72	□□□□□ -1.97
SNU114	YKL173W	PET309	P32522	965 aa	Predicted RBP	2.72	□□□□□ -1.97
SNU114	YKL173W	YHR078W	P38799	552 aa		2.72	□□□□□ -1.97
SNU114	YKL173W	SPC72	P39723	622 aa		2.72	□□□□□ -1.97
SNU114	YKL173W	IRC5	P43610	853 aa		2.72	□□□□□ -1.97
SNU114	YKL173W	MUS81	Q04149	632 aa	Predicted RBP	2.72	□□□□□ -1.97
SNU114	YKL173W	SWI6	P09959	803 aa		2.71	□□□□□ -1.97
SNU114	YKL173W	HRR25	P29295	494 aa	Known RBP	2.71	□□□□□ -1.97
SNU114	YKL173W	YBR053C	P38235	358 aa		2.71	□□□□□ -1.97
SNU114	YKL173W	DUN1	P39009	513 aa		2.71	□□□□□ -1.97
SNU114	YKL173W	ESL1	P40456	1118 aa		2.71	□□□□□ -1.97
SNU114	YKL173W	ALY2	P47029	1046 aa		2.71	□□□□□ -1.97
SNU114	YKL173W	GTR1	Q00582	310 aa		2.71	□□□□□ -1.97
SNU114	YKL173W	EIS1	Q05050	843 aa	Known RBP	2.71	□□□□□ -1.97
SNU114	YKL173W	PNS1	Q12412	539 aa		2.71	□□□□□ -1.97
SNU114	YKL173W	SNU66	Q12420	587 aa	Predicted RBP	2.71	□□□□□ -1.97
SNU114	YKL173W	ERP4	Q12450	207 aa		2.71	□□□□□ -1.97
SNU114	YKL173W	FOB1	O13329	566 aa		2.71	□□□□□ -1.98
SNU114	YKL173W	NCP1	P16603	691 aa	Known RBP	2.71	□□□□□ -1.98
SNU114	YKL173W	PTH2	P34222	208 aa		2.71	□□□□□ -1.98
SNU114	YKL173W	RRT6	P53117	311 aa	Predicted RBP	2.71	□□□□□ -1.98
SNU114	YKL173W	IMH1	Q06704	911 aa	Known RBP	2.71	□□□□□ -1.98
SNU114	YKL173W	PEX19	Q07418	342 aa		2.71	□□□□□ -1.98
SNU114	YKL173W	YOL073C	Q08232	322 aa		2.71	□□□□□ -1.98
SNU114	YKL173W	NEW1	Q08972	1196 aa	Known RBP	2.71	□□□□□ -1.98
SNU114	YKL173W	RFA1	P22336	621 aa	Known RBP	2.71	□□□□□ -1.98
SNU114	YKL173W	ERG4	P25340	473 aa		2.71	□□□□□ -1.98
SNU114	YKL173W	SEC65	P29478	273 aa		2.71	□□□□□ -1.98
SNU114	YKL173W	MFT1	P33441	392 aa	Known RBP	2.71	□□□□□ -1.98
SNU114	YKL173W	YJR039W	P47107	1121 aa		2.71	□□□□□ -1.98
SNU114	YKL173W	BNA2	P47125	453 aa		2.71	□□□□□ -1.98
SNU114	YKL173W	NIT3	P49954	291 aa		2.71	□□□□□ -1.98
SNU114	YKL173W	CPR6	P53691	371 aa	Known RBP	2.71	□□□□□ -1.98
SNU114	YKL173W	YHM2	Q04013	314 aa		2.71	□□□□□ -1.98
SNU114	YKL173W	CLF1	Q12309	687 aa	Predicted RBP	2.71	□□□□□ -1.98
SNU114	YKL173W	HIF1	Q12373	385 aa		2.71	□□□□□ -1.98
SNU114	YKL173W	MF(ALPHA)2	P32435	120 aa		2.7	□□□□□ -1.98
SNU114	YKL173W	MOH1	P38191	138 aa		2.7	□□□□□ -1.98
SNU114	YKL173W	SIC1	P38634	284 aa		2.7	□□□□□ -1.98
SNU114	YKL173W	RPP1	P38786	293 aa		2.7	□□□□□ -1.98
SNU114	YKL173W	BEM4	P39011	633 aa		2.7	□□□□□ -1.98
SNU114	YKL173W	EMP65	P40085	556 aa		2.7	□□□□□ -1.98
SNU114	YKL173W	VHR1	P40522	640 aa		2.7	□□□□□ -1.98
SNU114	YKL173W	BAP3	P41815	604 aa		2.7	□□□□□ -1.98
SNU114	YKL173W	IES1	P43579	692 aa		2.7	□□□□□ -1.98
SNU114	YKL173W	RCR2	Q03446	210 aa	Known RBP	2.7	□□□□□ -1.98
SNU114	YKL173W	RTK1	Q12100	620 aa	Predicted RBP	2.7	□□□□□ -1.98
SNU114	YKL173W	ADH4	P10127	382 aa		2.7	□□□□□ -1.98
SNU114	YKL173W	HXT4	P32467	576 aa		2.7	□□□□□ -1.98
SNU114	YKL173W	RPN10	P38886	268 aa	Known RBP	2.7	□□□□□ -1.98
SNU114	YKL173W	YHR202W	P38887	602 aa		2.7	□□□□□ -1.98
SNU114	YKL173W	VPS8	P39702	1274 aa		2.7	□□□□□ -1.98
SNU114	YKL173W	MAD2	P40958	196 aa		2.7	□□□□□ -1.98
SNU114	YKL173W	PAP2	P53632	584 aa	Known RBP	2.7	□□□□□ -1.98
SNU114	YKL173W	TEP1	P53916	434 aa		2.7	□□□□□ -1.98
SNU114	YKL173W	NOP15	P53927	220 aa	Predicted RBP	2.7	□□□□□ -1.98
SNU114	YKL173W	ASM4	Q05166	528 aa		2.7	□□□□□ -1.98
SNU114	YKL173W	RPN7	Q06103	429 aa	Known RBP	2.7	□□□□□ -1.98
SNU114	YKL173W	TRM8	Q12009	286 aa		2.7	□□□□□ -1.98
SNU114	YKL173W	CWC2	Q12046	339 aa	Predicted RBP	2.7	□□□□□ -1.98
SNU114	YKL173W	YOR022C	Q12204	715 aa		2.7	□□□□□ -1.98
SNU114	YKL173W	SNF1	P06782	633 aa	Known RBP	2.69	□□□□□ -1.98
SNU114	YKL173W	IME1	P21190	360 aa		2.69	□□□□□ -1.98
SNU114	YKL173W	GID8	P40208	455 aa		2.69	□□□□□ -1.98

Retrieved 100 of 5,963 RNA–protein pairs in 43.9 ms