RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	YKL222C	P35995	705 aa		5.68	□□□□□ -1.5
CAF16	YFL028C	KTR4	P38131	464 aa		5.68	□□□□□ -1.5
CAF16	YFL028C	BEM4	P39011	633 aa		5.68	□□□□□ -1.5
CAF16	YFL028C	VHR1	P40522	640 aa		5.68	□□□□□ -1.5
CAF16	YFL028C	MET12	P46151	657 aa		5.68	□□□□□ -1.5
CAF16	YFL028C	YBP2	P53169	641 aa		5.68	□□□□□ -1.5
CAF16	YFL028C	YMR210W	Q03649	449 aa		5.68	□□□□□ -1.5
CAF16	YFL028C	STE14	P32584	239 aa		5.67	□□□□□ -1.5
CAF16	YFL028C	MRS6	P32864	603 aa	Known RBP	5.67	□□□□□ -1.5
CAF16	YFL028C	AKL1	P38080	1108 aa	Known RBP	5.67	□□□□□ -1.5
CAF16	YFL028C	APN2	P38207	520 aa		5.67	□□□□□ -1.5
CAF16	YFL028C	YHL041W	P38730	149 aa		5.67	□□□□□ -1.5
CAF16	YFL028C	RRP8	P38961	392 aa	Known RBP	5.67	□□□□□ -1.5
CAF16	YFL028C	MSS4	P38994	779 aa		5.67	□□□□□ -1.5
CAF16	YFL028C	URM1	P40554	99 aa	Predicted RBP	5.67	□□□□□ -1.5
CAF16	YFL028C	SET2	P46995	733 aa	Known RBP	5.67	□□□□□ -1.5
CAF16	YFL028C	SNO2	P53823	222 aa		5.67	□□□□□ -1.5
CAF16	YFL028C	RIA1	P53893	1110 aa		5.67	□□□□□ -1.5
CAF16	YFL028C	OMS1	Q06668	471 aa		5.67	□□□□□ -1.5
CAF16	YFL028C	YDL121C	Q07541	149 aa		5.67	□□□□□ -1.5
CAF16	YFL028C	GPR1	Q12361	961 aa		5.67	□□□□□ -1.5
CAF16	YFL028C	RPS17A	P02407	136 aa	Known RBP	5.66	□□□□□ -1.5
CAF16	YFL028C	RPP2A	P05319	106 aa	Known RBP	5.66	□□□□□ -1.5
CAF16	YFL028C	HIS5	P07172	385 aa		5.66	□□□□□ -1.5
CAF16	YFL028C	RPS17B	P14127	136 aa	Known RBP	5.66	□□□□□ -1.5
CAF16	YFL028C	APA1	P16550	321 aa	Known RBP	5.66	□□□□□ -1.5
CAF16	YFL028C	IMG2	P25642	146 aa	Predicted RBP	5.66	□□□□□ -1.5
CAF16	YFL028C	PTH2	P34222	208 aa		5.66	□□□□□ -1.5
CAF16	YFL028C	LAM1	P38851	1228 aa		5.66	□□□□□ -1.5
CAF16	YFL028C	DUN1	P39009	513 aa		5.66	□□□□□ -1.5
CAF16	YFL028C	HOL1	P53389	586 aa		5.66	□□□□□ -1.5
CAF16	YFL028C	CNM67	P53865	581 aa	Known RBP	5.66	□□□□□ -1.5
CAF16	YFL028C	ASI2	P53895	289 aa		5.66	□□□□□ -1.5
CAF16	YFL028C	PKH1	Q03407	766 aa		5.66	□□□□□ -1.5
CAF16	YFL028C	CWC2	Q12046	339 aa	Predicted RBP	5.66	□□□□□ -1.5
CAF16	YFL028C	SWM1	Q12379	170 aa		5.66	□□□□□ -1.5
CAF16	YFL028C	EMC1	P25574	760 aa		5.65	□□□□□ -1.5
CAF16	YFL028C	HXT4	P32467	576 aa		5.65	□□□□□ -1.5
CAF16	YFL028C	NAB3	P38996	802 aa	Known RBP RIP-Chip data	5.65	□□□□□ -1.5	not detected
CAF16	YFL028C	EAF5	P39995	279 aa		5.65	□□□□□ -1.5
CAF16	YFL028C	ISA1	Q07821	250 aa	Predicted RBP	5.65	□□□□□ -1.5
CAF16	YFL028C	NGL1	Q08213	363 aa	Known RBP	5.65	□□□□□ -1.5
CAF16	YFL028C	GPB1	Q08886	897 aa		5.65	□□□□□ -1.5
CAF16	YFL028C	NUR1	Q12066	484 aa		5.65	□□□□□ -1.5
CAF16	YFL028C	CDC26	P14724	124 aa		5.64	□□□□□ -1.51
CAF16	YFL028C	SEC21	P32074	935 aa	Known RBP	5.64	□□□□□ -1.51
CAF16	YFL028C	LIP5	P32875	414 aa		5.64	□□□□□ -1.51
CAF16	YFL028C	YIL092W	P40497	633 aa		5.64	□□□□□ -1.51
CAF16	YFL028C	CCT8	P47079	568 aa	Known RBP	5.64	□□□□□ -1.51
CAF16	YFL028C	CTH1	P47976	325 aa		5.64	□□□□□ -1.51
CAF16	YFL028C	PRP31	P49704	494 aa	Predicted RBP	5.64	□□□□□ -1.51
CAF16	YFL028C	YPS7	Q06325	596 aa		5.64	□□□□□ -1.51
CAF16	YFL028C	BRE4	Q07660	1125 aa		5.64	□□□□□ -1.51
CAF16	YFL028C	HMI1	Q12039	706 aa		5.64	□□□□□ -1.51
CAF16	YFL028C	YOL114C	Q12322	202 aa		5.64	□□□□□ -1.51
CAF16	YFL028C	TUB3	P09734	445 aa	Known RBP	5.63	□□□□□ -1.51
CAF16	YFL028C	PYC1	P11154	1178 aa	Known RBP	5.63	□□□□□ -1.51
CAF16	YFL028C	PHO81	P17442	1178 aa		5.63	□□□□□ -1.51
CAF16	YFL028C	PRP4	P20053	465 aa	Known RBP	5.63	□□□□□ -1.51
CAF16	YFL028C	DGR2	P32330	852 aa		5.63	□□□□□ -1.51
CAF16	YFL028C	NGG1	P32494	702 aa		5.63	□□□□□ -1.51
CAF16	YFL028C	TAF5	P38129	798 aa		5.63	□□□□□ -1.51
CAF16	YFL028C	QRI7	P43122	407 aa		5.63	□□□□□ -1.51
CAF16	YFL028C	EXG2	P52911	562 aa		5.63	□□□□□ -1.51
CAF16	YFL028C	NCS6	P53088	359 aa		5.63	□□□□□ -1.51
CAF16	YFL028C	PAP2	P53632	584 aa	Known RBP	5.63	□□□□□ -1.51
CAF16	YFL028C	HIM1	Q06674	414 aa		5.63	□□□□□ -1.51
CAF16	YFL028C	NPC2	Q12408	173 aa		5.63	□□□□□ -1.51
CAF16	YFL028C	YLR415C	O13578	112 aa		5.62	□□□□□ -1.51
CAF16	YFL028C	MSS18	P08593	268 aa		5.62	□□□□□ -1.51
CAF16	YFL028C	ADE2	P21264	571 aa	Known RBP	5.62	□□□□□ -1.51
CAF16	YFL028C	PHO3	P24031	467 aa		5.62	□□□□□ -1.51
CAF16	YFL028C	DBF20	P32328	564 aa		5.62	□□□□□ -1.51
CAF16	YFL028C	PUB1	P32588	453 aa	Known RBP RIP-Chip data	5.62	□□□□□ -1.51	not detected
CAF16	YFL028C	POL12	P38121	705 aa	Predicted RBP	5.62	□□□□□ -1.51
CAF16	YFL028C	MEF2	P39677	819 aa		5.62	□□□□□ -1.51
CAF16	YFL028C	SAW1	P39735	261 aa		5.62	□□□□□ -1.51
CAF16	YFL028C	IES1	P43579	692 aa		5.62	□□□□□ -1.51
CAF16	YFL028C	ASK10	P48361	1146 aa		5.62	□□□□□ -1.51
CAF16	YFL028C	CEG1	Q01159	459 aa	Predicted RBP	5.62	□□□□□ -1.51
CAF16	YFL028C	YAP6	Q03935	383 aa		5.62	□□□□□ -1.51
CAF16	YFL028C	RXT3	Q07458	294 aa		5.62	□□□□□ -1.51
CAF16	YFL028C	VHS3	Q08438	674 aa		5.62	□□□□□ -1.51
CAF16	YFL028C	SGO1	Q08490	590 aa		5.62	□□□□□ -1.51
CAF16	YFL028C	CDC6	P09119	513 aa		5.61	□□□□□ -1.51
CAF16	YFL028C	ESL2	P36168	1195 aa		5.61	□□□□□ -1.51
CAF16	YFL028C	SRP68	P38687	599 aa	Known RBP	5.61	□□□□□ -1.51
CAF16	YFL028C	ACA1	P39970	489 aa		5.61	□□□□□ -1.51
CAF16	YFL028C	CHA4	P43634	648 aa		5.61	□□□□□ -1.51
CAF16	YFL028C	COX18	P53239	316 aa		5.61	□□□□□ -1.51
CAF16	YFL028C	VPS62	P53285	467 aa		5.61	□□□□□ -1.51
CAF16	YFL028C	MRPL22	P53881	309 aa		5.61	□□□□□ -1.51
CAF16	YFL028C	DUS4	Q06063	367 aa		5.61	□□□□□ -1.51
CAF16	YFL028C	PEX19	Q07418	342 aa		5.61	□□□□□ -1.51
CAF16	YFL028C	TY3B-I	Q7LHG5	1498 aa	Known RBP	5.61	□□□□□ -1.51
CAF16	YFL028C	YEL076C-A	P0CX16	216 aa		5.6	□□□□□ -1.51
CAF16	YFL028C	YLR464W	P0CX17	216 aa		5.6	□□□□□ -1.51
CAF16	YFL028C	APT2	P36973	181 aa		5.6	□□□□□ -1.51
CAF16	YFL028C	EXO84	P38261	753 aa		5.6	□□□□□ -1.51
CAF16	YFL028C	SIC1	P38634	284 aa		5.6	□□□□□ -1.51

Retrieved 100 of 5,963 RNA–protein pairs in 15.3 ms