RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC48	YDL126C	HST3	P53687	447 aa		4.87	□□□□□ -1.63
CDC48	YDL126C	NOP15	P53927	220 aa	Predicted RBP	4.87	□□□□□ -1.63
CDC48	YDL126C	YME2	P32843	850 aa		4.86	□□□□□ -1.63
CDC48	YDL126C	HNT2	P49775	206 aa		4.86	□□□□□ -1.63
CDC48	YDL126C	YGR283C	P53336	341 aa	Predicted RBP	4.86	□□□□□ -1.63
CDC48	YDL126C	CUZ1	P53899	274 aa		4.86	□□□□□ -1.63
CDC48	YDL126C	MOT3	P54785	490 aa	Known RBP	4.86	□□□□□ -1.63
CDC48	YDL126C	UBP16	Q02863	499 aa		4.86	□□□□□ -1.63
CDC48	YDL126C	DIB1	Q06819	143 aa	Predicted RBP	4.86	□□□□□ -1.63
CDC48	YDL126C	RSC58	Q07979	502 aa		4.86	□□□□□ -1.63
CDC48	YDL126C	SGT2	Q12118	346 aa	Known RBP	4.86	□□□□□ -1.63
CDC48	YDL126C	YPR071W	Q12346	211 aa		4.86	□□□□□ -1.63
CDC48	YDL126C	YDR461C-A	Q2V2P7	80 aa		4.86	□□□□□ -1.63
CDC48	YDL126C	CBP3	P21560	335 aa		4.86	□□□□□ -1.63
CDC48	YDL126C	RAD53	P22216	821 aa		4.86	□□□□□ -1.63
CDC48	YDL126C	MSM1	P22438	575 aa		4.86	□□□□□ -1.63
CDC48	YDL126C	RAD16	P31244	790 aa		4.86	□□□□□ -1.63
CDC48	YDL126C	MCD4	P36051	919 aa		4.86	□□□□□ -1.63
CDC48	YDL126C	AAP1	P37898	856 aa	Known RBP	4.86	□□□□□ -1.63
CDC48	YDL126C	BAP2	P38084	609 aa		4.86	□□□□□ -1.63
CDC48	YDL126C	OSH3	P38713	996 aa	Known RBP	4.86	□□□□□ -1.63
CDC48	YDL126C	MXR1	P40029	184 aa		4.86	□□□□□ -1.63
CDC48	YDL126C	LSM5	P40089	93 aa	Known RBP	4.86	□□□□□ -1.63
CDC48	YDL126C	CAF16	P43569	289 aa		4.86	□□□□□ -1.63
CDC48	YDL126C	MDE1	P47095	244 aa		4.86	□□□□□ -1.63
CDC48	YDL126C	LYS4	P49367	693 aa	Predicted RBP	4.86	□□□□□ -1.63
CDC48	YDL126C	PBP1	P53297	722 aa	Known RBP	4.86	□□□□□ -1.63
CDC48	YDL126C	JJJ1	P53863	590 aa		4.86	□□□□□ -1.63
CDC48	YDL126C	NFI1	Q12216	726 aa		4.86	□□□□□ -1.63
CDC48	YDL126C	POM152	P39685	1337 aa		4.85	□□□□□ -1.63
CDC48	YDL126C	TUF1	P02992	437 aa	Known RBP	4.85	□□□□□ -1.63
CDC48	YDL126C	RED1	P14291	827 aa		4.85	□□□□□ -1.63
CDC48	YDL126C	SEC18	P18759	758 aa	Known RBP	4.85	□□□□□ -1.63
CDC48	YDL126C	SAN1	P22470	610 aa		4.85	□□□□□ -1.63
CDC48	YDL126C	RPL5	P26321	297 aa	Known RBP	4.85	□□□□□ -1.63
CDC48	YDL126C	BEM3	P32873	1128 aa		4.85	□□□□□ -1.63
CDC48	YDL126C	YEL1	P34225	687 aa		4.85	□□□□□ -1.63
CDC48	YDL126C	ACA1	P39970	489 aa		4.85	□□□□□ -1.63
CDC48	YDL126C	TOK1	P40310	691 aa		4.85	□□□□□ -1.63
CDC48	YDL126C	HLJ1	P48353	224 aa		4.85	□□□□□ -1.63
CDC48	YDL126C	ALF1	P53904	254 aa		4.85	□□□□□ -1.63
CDC48	YDL126C	CEG1	Q01159	459 aa	Predicted RBP	4.85	□□□□□ -1.63
CDC48	YDL126C	HRQ1	Q05549	1077 aa		4.85	□□□□□ -1.63
CDC48	YDL126C	ABP140	Q08641	628 aa	Known RBP	4.85	□□□□□ -1.63
CDC48	YDL126C	FIG2	P25653	1609 aa		4.85	□□□□□ -1.63
CDC48	YDL126C	GFA1	P14742	717 aa	Known RBP	4.85	□□□□□ -1.63
CDC48	YDL126C	ERS1	P17261	260 aa		4.85	□□□□□ -1.63
CDC48	YDL126C	LTP1	P40347	161 aa		4.85	□□□□□ -1.63
CDC48	YDL126C	TIM10	P87108	93 aa		4.85	□□□□□ -1.63
CDC48	YDL126C	SNP1	Q00916	300 aa	Predicted RBP	4.85	□□□□□ -1.63
CDC48	YDL126C	LCD1	Q04377	747 aa		4.85	□□□□□ -1.63
CDC48	YDL126C	SGD1	Q06132	899 aa		4.85	□□□□□ -1.63
CDC48	YDL126C	SYT1	Q06836	1226 aa		4.85	□□□□□ -1.63
CDC48	YDL126C	SFL1	P20134	766 aa		4.84	□□□□□ -1.63
CDC48	YDL126C	SFP1	P32432	683 aa		4.84	□□□□□ -1.63
CDC48	YDL126C	ATG19	P35193	415 aa		4.84	□□□□□ -1.63
CDC48	YDL126C	RPC37	P36121	282 aa		4.84	□□□□□ -1.63
CDC48	YDL126C	ALG2	P43636	503 aa		4.84	□□□□□ -1.63
CDC48	YDL126C	SAE2	P46946	345 aa		4.84	□□□□□ -1.63
CDC48	YDL126C	YJR096W	P47137	282 aa		4.84	□□□□□ -1.63
CDC48	YDL126C	ATP25	Q03153	612 aa		4.84	□□□□□ -1.63
CDC48	YDL126C	TY1A-MR1	Q04215	440 aa		4.84	□□□□□ -1.63
CDC48	YDL126C	RNH1	Q04740	348 aa		4.84	□□□□□ -1.63
CDC48	YDL126C	YDR338C	Q05497	695 aa		4.84	□□□□□ -1.63
CDC48	YDL126C	APC5	Q08683	685 aa		4.84	□□□□□ -1.63
CDC48	YDL126C	CTI6	Q08923	506 aa		4.84	□□□□□ -1.63
CDC48	YDL126C	NAR1	P23503	491 aa	Known RBP	4.84	□□□□□ -1.64
CDC48	YDL126C	NIC96	P34077	839 aa		4.84	□□□□□ -1.64
CDC48	YDL126C	MDJ1	P35191	511 aa		4.84	□□□□□ -1.64
CDC48	YDL126C	MUD2	P36084	527 aa	Known RBP	4.84	□□□□□ -1.64
CDC48	YDL126C	MCM7	P38132	845 aa		4.84	□□□□□ -1.64
CDC48	YDL126C	TSL1	P38427	1098 aa	Known RBP	4.84	□□□□□ -1.64
CDC48	YDL126C	RMD8	P43620	662 aa		4.84	□□□□□ -1.64
CDC48	YDL126C	CTH1	P47976	325 aa		4.84	□□□□□ -1.64
CDC48	YDL126C	LSC1	P53598	329 aa	Known RBP	4.84	□□□□□ -1.64
CDC48	YDL126C	RRB1	Q04225	511 aa	Known RBP	4.84	□□□□□ -1.64
CDC48	YDL126C	NEW1	Q08972	1196 aa	Known RBP	4.84	□□□□□ -1.64
CDC48	YDL126C	YRM1	Q12340	786 aa		4.84	□□□□□ -1.64
CDC48	YDL126C	PMD1	P32634	1753 aa		4.83	□□□□□ -1.64
CDC48	YDL126C	TOM70	P07213	617 aa	Known RBP	4.83	□□□□□ -1.64
CDC48	YDL126C	SIS1	P25294	352 aa	Known RBP	4.83	□□□□□ -1.64
CDC48	YDL126C	GFD2	P25370	566 aa	Known RBP	4.83	□□□□□ -1.64
CDC48	YDL126C	PET309	P32522	965 aa	Predicted RBP	4.83	□□□□□ -1.64
CDC48	YDL126C	TFB1	P32776	642 aa		4.83	□□□□□ -1.64
CDC48	YDL126C	MRS6	P32864	603 aa	Known RBP	4.83	□□□□□ -1.64
CDC48	YDL126C	GLY1	P37303	387 aa	Known RBP	4.83	□□□□□ -1.64
CDC48	YDL126C	RTT107	P38850	1070 aa		4.83	□□□□□ -1.64
CDC48	YDL126C	QRI7	P43122	407 aa		4.83	□□□□□ -1.64
CDC48	YDL126C	YGR045C	P53229	120 aa		4.83	□□□□□ -1.64
CDC48	YDL126C	SDA1	P53313	767 aa	Known RBP	4.83	□□□□□ -1.64
CDC48	YDL126C	SRC1	Q03707	834 aa		4.83	□□□□□ -1.64
CDC48	YDL126C	YDR131C	Q03899	556 aa		4.83	□□□□□ -1.64
CDC48	YDL126C	YLR345W	Q06137	509 aa		4.83	□□□□□ -1.64
CDC48	YDL126C	MLC2	Q06580	163 aa		4.83	□□□□□ -1.64
CDC48	YDL126C	PSR2	Q07949	397 aa		4.83	□□□□□ -1.64
CDC48	YDL126C	ENV7	Q12003	364 aa		4.83	□□□□□ -1.64
CDC48	YDL126C	PTC5	Q12511	572 aa		4.83	□□□□□ -1.64
CDC48	YDL126C	MRPS28	P21771	286 aa		4.83	□□□□□ -1.64
CDC48	YDL126C	CHS3	P29465	1165 aa		4.83	□□□□□ -1.64
CDC48	YDL126C	UGA2	P38067	497 aa		4.83	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 10.8 ms