RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 MAP3K15Q6ZN16 1313 aa9.06□□□□□ -0.96
DEPDC4-208ENST00000549341 PSMD14O00487 310 aa9.06□□□□□ -0.96
DEPDC4-208ENST00000549341 GFRA3O60609 400 aa9.06□□□□□ -0.96
DEPDC4-208ENST00000549341 CT47B1P0C2W7 299 aaPredicted RBP9.06□□□□□ -0.96
DEPDC4-208ENST00000549341 DCTN1Q14203 1278 aa9.06□□□□□ -0.96
DEPDC4-208ENST00000549341 PKN2Q16513 984 aaKnown RBP9.06□□□□□ -0.96
DEPDC4-208ENST00000549341 KIF4BQ2VIQ3 1234 aa9.06□□□□□ -0.96
DEPDC4-208ENST00000549341 DUSP27Q5VZP5 1158 aa9.06□□□□□ -0.96
DEPDC4-208ENST00000549341 SULF1Q8IWU6 871 aa9.06□□□□□ -0.96
DEPDC4-208ENST00000549341 CDCA5Q96FF9 252 aa9.06□□□□□ -0.96
DEPDC4-208ENST00000549341 CDCA7LQ96GN5 454 aa9.06□□□□□ -0.96
DEPDC4-208ENST00000549341 PHACTR3Q96KR7 559 aa9.06□□□□□ -0.96
DEPDC4-208ENST00000549341 RTFDC1Q9BY42 306 aaPredicted RBP9.06□□□□□ -0.96
DEPDC4-208ENST00000549341 RRP7AQ9Y3A4 280 aaKnown RBP9.06□□□□□ -0.96
DEPDC4-208ENST00000549341 ASTN2O75129 1339 aaPredicted RBP9.05□□□□□ -0.96
DEPDC4-208ENST00000549341 FXR1P51114 621 aaKnown RBP eCLIP9.05□□□□□ -0.96
DEPDC4-208ENST00000549341 MFSD10Q14728 455 aa9.05□□□□□ -0.96
DEPDC4-208ENST00000549341 TRMT2AQ8IZ69 625 aaKnown RBP9.05□□□□□ -0.96
DEPDC4-208ENST00000549341 NLRP3Q96P20 1036 aa9.05□□□□□ -0.96
DEPDC4-208ENST00000549341 VPS33BQ9H267 617 aa9.05□□□□□ -0.96
DEPDC4-208ENST00000549341 DBNDD1Q9H9R9 158 aa9.05□□□□□ -0.96
DEPDC4-208ENST00000549341 MIS18AQ9NYP9 233 aa9.05□□□□□ -0.96
DEPDC4-208ENST00000549341 ERVV-1B6SEH8 477 aa9.04□□□□□ -0.96
DEPDC4-208ENST00000549341 RRP1P56182 461 aaKnown RBP9.04□□□□□ -0.96
DEPDC4-208ENST00000549341 FBXO46Q6PJ61 603 aaPredicted RBP9.04□□□□□ -0.96
DEPDC4-208ENST00000549341 ZNF428Q96B54 188 aa9.04□□□□□ -0.96
DEPDC4-208ENST00000549341 LRCH3Q96II8 777 aa9.04□□□□□ -0.96
DEPDC4-208ENST00000549341 EPAS1Q99814 870 aa9.04□□□□□ -0.96
DEPDC4-208ENST00000549341 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.04□□□□□ -0.96
DEPDC4-208ENST00000549341 TRIOBPQ9H2D6 2365 aa9.04□□□□□ -0.96
DEPDC4-208ENST00000549341 A0A0C4DFX4 3053 aa9.03□□□□□ -0.96
DEPDC4-208ENST00000549341 HCLS1P14317 486 aaPredicted RBP9.03□□□□□ -0.96
DEPDC4-208ENST00000549341 GNAI1P63096 354 aa9.03□□□□□ -0.96
DEPDC4-208ENST00000549341 C6orf132Q5T0Z8 1188 aa9.03□□□□□ -0.96
DEPDC4-208ENST00000549341 MOB2Q70IA6 237 aa9.03□□□□□ -0.96
DEPDC4-208ENST00000549341 PPP1R42Q7Z4L9 355 aa9.03□□□□□ -0.96
DEPDC4-208ENST00000549341 UTP14AQ9BVJ6 771 aaKnown RBP9.03□□□□□ -0.96
DEPDC4-208ENST00000549341 PPP4R2Q9NY27 417 aa9.03□□□□□ -0.96
DEPDC4-208ENST00000549341 SIPA1L3O60292 1781 aaPredicted RBP9.03□□□□□ -0.96
DEPDC4-208ENST00000549341 SZT2Q5T011 3432 aa9.03□□□□□ -0.96
DEPDC4-208ENST00000549341 CEP290O15078 2479 aa9.03□□□□□ -0.96
DEPDC4-208ENST00000549341 RANBP2P49792 3224 aaKnown RBP9.02□□□□□ -0.97
DEPDC4-208ENST00000549341 TRIM6-TRIM34B2RNG4 842 aa9.02□□□□□ -0.97
DEPDC4-208ENST00000549341 GPR25O00155 361 aa9.02□□□□□ -0.97
DEPDC4-208ENST00000549341 HTATSF1O43719 755 aaKnown RBP9.02□□□□□ -0.97
DEPDC4-208ENST00000549341 ECE2O60344 883 aa9.02□□□□□ -0.97
DEPDC4-208ENST00000549341 MS4A1P11836 297 aa9.02□□□□□ -0.97
DEPDC4-208ENST00000549341 GRAPQ13588 217 aa9.02□□□□□ -0.97
DEPDC4-208ENST00000549341 TTLL12Q14166 644 aaPredicted RBP9.02□□□□□ -0.97
DEPDC4-208ENST00000549341 WASHC4Q2M389 1173 aa9.02□□□□□ -0.97
DEPDC4-208ENST00000549341 PARP10Q53GL7 1025 aa9.02□□□□□ -0.97
DEPDC4-208ENST00000549341 ANGEL2Q5VTE6 544 aaKnown RBP9.02□□□□□ -0.97
DEPDC4-208ENST00000549341 DDX46Q7L014 1031 aaKnown RBP9.02□□□□□ -0.97
DEPDC4-208ENST00000549341 SP8Q8IXZ3 490 aa9.02□□□□□ -0.97
DEPDC4-208ENST00000549341 GRAPLQ8TC17 118 aaPredicted RBP9.02□□□□□ -0.97
DEPDC4-208ENST00000549341 DPF2Q92785 391 aa9.02□□□□□ -0.97
DEPDC4-208ENST00000549341 EMILIN3Q9NT22 766 aa9.02□□□□□ -0.97
DEPDC4-208ENST00000549341 SEPT9Q9UHD8 586 aaPredicted RBP9.02□□□□□ -0.97
DEPDC4-208ENST00000549341 SCAF8Q9UPN6 1271 aaKnown RBP9.02□□□□□ -0.97
DEPDC4-208ENST00000549341 BRCA2P51587 3418 aa9.02□□□□□ -0.97
DEPDC4-208ENST00000549341 RTL9Q8NET4 1388 aa9.01□□□□□ -0.97
DEPDC4-208ENST00000549341 C6orf229H3BNL8 230 aa9.01□□□□□ -0.97
DEPDC4-208ENST00000549341 BBOX1O75936 387 aa9.01□□□□□ -0.97
DEPDC4-208ENST00000549341 RPS12P25398 132 aaKnown RBP9.01□□□□□ -0.97
DEPDC4-208ENST00000549341 ZNF34Q8IZ26 560 aa9.01□□□□□ -0.97
DEPDC4-208ENST00000549341 KCNQ5Q9NR82 932 aa9.01□□□□□ -0.97
DEPDC4-208ENST00000549341 DUOX1Q9NRD9 1551 aa9.01□□□□□ -0.97
DEPDC4-208ENST00000549341 IFT57Q9NWB7 429 aa9.01□□□□□ -0.97
DEPDC4-208ENST00000549341 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.01□□□□□ -0.97
DEPDC4-208ENST00000549341 CENPFP49454 3210 aa9□□□□□ -0.97
DEPDC4-208ENST00000549341 UBE2Q2LH0YL09 131 aa9□□□□□ -0.97
DEPDC4-208ENST00000549341 FKTNO75072 461 aa9□□□□□ -0.97
DEPDC4-208ENST00000549341 GIGYF2Q6Y7W6 1299 aaKnown RBP9□□□□□ -0.97
DEPDC4-208ENST00000549341 NSFL1CQ9UNZ2 370 aaKnown RBP9□□□□□ -0.97
DEPDC4-208ENST00000549341 TRIM17Q9Y577 477 aa9□□□□□ -0.97
DEPDC4-208ENST00000549341 NRG2O14511 850 aaPredicted RBP8.99□□□□□ -0.97
DEPDC4-208ENST00000549341 FKBP1BP68106 108 aa8.99□□□□□ -0.97
DEPDC4-208ENST00000549341 SREBF2Q12772 1141 aa8.99□□□□□ -0.97
DEPDC4-208ENST00000549341 SCARF1Q14162 830 aa8.99□□□□□ -0.97
DEPDC4-208ENST00000549341 TAF7Q15545 349 aaPredicted RBP8.99□□□□□ -0.97
DEPDC4-208ENST00000549341 PRAMEF18Q5VWM3 479 aa8.99□□□□□ -0.97
DEPDC4-208ENST00000549341 THUMPD2Q9BTF0 503 aaKnown RBP8.99□□□□□ -0.97
DEPDC4-208ENST00000549341 CHMP4AQ9BY43 222 aa8.99□□□□□ -0.97
DEPDC4-208ENST00000549341 R3HDMLQ9H3Y0 253 aa8.99□□□□□ -0.97
DEPDC4-208ENST00000549341 LAS1LQ9Y4W2 734 aaKnown RBP8.99□□□□□ -0.97
DEPDC4-208ENST00000549341 DLL1O00548 723 aa8.98□□□□□ -0.97
DEPDC4-208ENST00000549341 ANXA1P04083 346 aa8.98□□□□□ -0.97
DEPDC4-208ENST00000549341 IRX6P78412 446 aaPredicted RBP8.98□□□□□ -0.97
DEPDC4-208ENST00000549341 GPSM2P81274 684 aa8.98□□□□□ -0.97
DEPDC4-208ENST00000549341 PRKG1Q13976 671 aa8.98□□□□□ -0.97
DEPDC4-208ENST00000549341 TRMT112Q9UI30 125 aaKnown RBP8.98□□□□□ -0.97
DEPDC4-208ENST00000549341 FANCIQ9NVI1 1328 aa8.98□□□□□ -0.97
DEPDC4-208ENST00000549341 PAPPA2Q9BXP8 1791 aa8.97□□□□□ -0.97
DEPDC4-208ENST00000549341 IPO8O15397 1037 aaKnown RBP8.97□□□□□ -0.97
DEPDC4-208ENST00000549341 EN2P19622 333 aaPredicted RBP8.97□□□□□ -0.97
DEPDC4-208ENST00000549341 PPP4CP60510 307 aa8.97□□□□□ -0.97
DEPDC4-208ENST00000549341 AAMPQ13685 434 aa8.97□□□□□ -0.97
DEPDC4-208ENST00000549341 SLC10A5Q5PT55 438 aa8.97□□□□□ -0.97
DEPDC4-208ENST00000549341 EYA3Q99504 573 aa8.97□□□□□ -0.97
DEPDC4-208ENST00000549341 BABAM1Q9NWV8 329 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms