RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 CEP120Q8N960 986 aa6.18□□□□□ -1.42
HMGB1-204ENST00000399489 ADAM19Q9H013 955 aa6.18□□□□□ -1.42
HMGB1-204ENST00000399489 H3BRJ5 948 aa6.17□□□□□ -1.42
HMGB1-204ENST00000399489 CYP2E1P05181 493 aaPredicted RBP6.17□□□□□ -1.42
HMGB1-204ENST00000399489 PIP4K2BP78356 416 aa6.17□□□□□ -1.42
HMGB1-204ENST00000399489 GALNT11Q8NCW6 608 aa6.17□□□□□ -1.42
HMGB1-204ENST00000399489 UTP4Q969X6 686 aaKnown RBP6.17□□□□□ -1.42
HMGB1-204ENST00000399489 CARD10Q9BWT7 1032 aa6.17□□□□□ -1.42
HMGB1-204ENST00000399489 OSGEPQ9NPF4 335 aa6.17□□□□□ -1.42
HMGB1-204ENST00000399489 TMEM63CQ9P1W3 806 aa6.17□□□□□ -1.42
HMGB1-204ENST00000399489 KANSL3Q9P2N6 904 aa6.17□□□□□ -1.42
HMGB1-204ENST00000399489 IGLV1-40P01703 118 aa6.16□□□□□ -1.42
HMGB1-204ENST00000399489 EHHADHQ08426 723 aa6.16□□□□□ -1.42
HMGB1-204ENST00000399489 ATCAYQ86WG3 371 aa6.16□□□□□ -1.42
HMGB1-204ENST00000399489 SH2B1Q9NRF2 756 aaPredicted RBP6.16□□□□□ -1.42
HMGB1-204ENST00000399489 PDGFAP04085 211 aa6.16□□□□□ -1.42
HMGB1-204ENST00000399489 POP1Q99575 1024 aaKnown RBP6.16□□□□□ -1.42
HMGB1-204ENST00000399489 SALL4Q9UJQ4 1053 aa6.16□□□□□ -1.42
HMGB1-204ENST00000399489 RBM47A0AV96 593 aaKnown RBP6.15□□□□□ -1.42
HMGB1-204ENST00000399489 PDE2AO00408 941 aaPredicted RBP6.15□□□□□ -1.42
HMGB1-204ENST00000399489 EPHA1P21709 976 aa6.15□□□□□ -1.42
HMGB1-204ENST00000399489 USP5P45974 858 aa6.15□□□□□ -1.42
HMGB1-204ENST00000399489 GTF3C2Q8WUA4 911 aaPredicted RBP6.15□□□□□ -1.42
HMGB1-204ENST00000399489 CNTN3Q9P232 1028 aa6.15□□□□□ -1.42
HMGB1-204ENST00000399489 EIF4EBP3O60516 100 aaPredicted RBP6.14□□□□□ -1.43
HMGB1-204ENST00000399489 PHACTR2O75167 634 aa6.14□□□□□ -1.43
HMGB1-204ENST00000399489 FAM13AO94988 1023 aa6.14□□□□□ -1.43
HMGB1-204ENST00000399489 MPSTP25325 297 aa6.14□□□□□ -1.43
HMGB1-204ENST00000399489 GRIK1P39086 918 aa6.14□□□□□ -1.43
HMGB1-204ENST00000399489 EIF1AXP47813 144 aaKnown RBP6.14□□□□□ -1.43
HMGB1-204ENST00000399489 ANKRD34AQ69YU3 496 aa6.14□□□□□ -1.43
HMGB1-204ENST00000399489 C1orf127Q8N9H9 656 aa6.14□□□□□ -1.43
HMGB1-204ENST00000399489 UBL7Q96S82 380 aaPredicted RBP6.14□□□□□ -1.43
HMGB1-204ENST00000399489 SLAIN2Q9P270 581 aa6.14□□□□□ -1.43
HMGB1-204ENST00000399489 WISP1O95388 367 aa6.13□□□□□ -1.43
HMGB1-204ENST00000399489 EDN3P14138 238 aa6.13□□□□□ -1.43
HMGB1-204ENST00000399489 SSTR4P31391 388 aa6.13□□□□□ -1.43
HMGB1-204ENST00000399489 FDX2Q6P4F2 183 aa6.13□□□□□ -1.43
HMGB1-204ENST00000399489 SLC7A3Q8WY07 619 aa6.13□□□□□ -1.43
HMGB1-204ENST00000399489 KLHDC7BQ96G42 594 aa6.13□□□□□ -1.43
HMGB1-204ENST00000399489 RNF208Q9H0X6 261 aa6.13□□□□□ -1.43
HMGB1-204ENST00000399489 KCNK4Q9NYG8 393 aa6.13□□□□□ -1.43
HMGB1-204ENST00000399489 CARNS1A5YM72 827 aa6.13□□□□□ -1.43
HMGB1-204ENST00000399489 GAS2O43903 313 aaKnown RBP6.13□□□□□ -1.43
HMGB1-204ENST00000399489 KIAA1211Q6ZU35 1233 aa6.13□□□□□ -1.43
HMGB1-204ENST00000399489 SNX29Q8TEQ0 813 aa6.13□□□□□ -1.43
HMGB1-204ENST00000399489 RUSC1Q9BVN2 902 aa6.13□□□□□ -1.43
HMGB1-204ENST00000399489 GGNBP2Q9H3C7 697 aa6.13□□□□□ -1.43
HMGB1-204ENST00000399489 DZANK1Q9NVP4 752 aa6.13□□□□□ -1.43
HMGB1-204ENST00000399489 PPM1GO15355 546 aaPredicted RBP6.12□□□□□ -1.43
HMGB1-204ENST00000399489 SSFA2P28290 1259 aa6.12□□□□□ -1.43
HMGB1-204ENST00000399489 C19orf57Q0VDD7 668 aa6.12□□□□□ -1.43
HMGB1-204ENST00000399489 SF3B2Q13435 895 aaKnown RBP6.12□□□□□ -1.43
HMGB1-204ENST00000399489 INTS5Q6P9B9 1019 aaKnown RBP6.12□□□□□ -1.43
HMGB1-204ENST00000399489 CLEC10AQ8IUN9 316 aa6.12□□□□□ -1.43
HMGB1-204ENST00000399489 TMEM102Q8N9M5 508 aaPredicted RBP6.12□□□□□ -1.43
HMGB1-204ENST00000399489 GIMAP7Q8NHV1 300 aa6.12□□□□□ -1.43
HMGB1-204ENST00000399489 UBASH3BQ8TF42 649 aa6.12□□□□□ -1.43
HMGB1-204ENST00000399489 FAM46AQ96IP4 442 aaKnown RBP6.12□□□□□ -1.43
HMGB1-204ENST00000399489 KCNF1Q9H3M0 494 aa6.12□□□□□ -1.43
HMGB1-204ENST00000399489 KIAA1522Q9P206 1035 aaPredicted RBP6.12□□□□□ -1.43
HMGB1-204ENST00000399489 POLIQ9UNA4 740 aa6.12□□□□□ -1.43
HMGB1-204ENST00000399489 HIF3AQ9Y2N7 669 aa6.12□□□□□ -1.43
HMGB1-204ENST00000399489 NLRP12P59046 1061 aa6.11□□□□□ -1.43
HMGB1-204ENST00000399489 B4GALNT3Q6L9W6 998 aa6.11□□□□□ -1.43
HMGB1-204ENST00000399489 BSNDQ8WZ55 320 aa6.11□□□□□ -1.43
HMGB1-204ENST00000399489 MYRFLQ96LU7 910 aa6.11□□□□□ -1.43
HMGB1-204ENST00000399489 OSMRQ99650 979 aa6.11□□□□□ -1.43
HMGB1-204ENST00000399489 DBNDD2Q9BQY9 259 aa6.11□□□□□ -1.43
HMGB1-204ENST00000399489 DDX3YO15523 660 aaKnown RBP6.11□□□□□ -1.43
HMGB1-204ENST00000399489 NFIAQ12857 509 aa6.11□□□□□ -1.43
HMGB1-204ENST00000399489 IKBKEQ14164 716 aa6.11□□□□□ -1.43
HMGB1-204ENST00000399489 RNF43Q68DV7 783 aa6.11□□□□□ -1.43
HMGB1-204ENST00000399489 DHX37Q8IY37 1157 aaKnown RBP6.11□□□□□ -1.43
HMGB1-204ENST00000399489 ARMC10Q8N2F6 343 aa6.11□□□□□ -1.43
HMGB1-204ENST00000399489 C7orf69Q9H7B7 122 aa6.11□□□□□ -1.43
HMGB1-204ENST00000399489 A6NHS1 94 aa6.1□□□□□ -1.43
HMGB1-204ENST00000399489 CANXP27824 592 aaKnown RBP6.1□□□□□ -1.43
HMGB1-204ENST00000399489 FKBP4Q02790 459 aaKnown RBP eCLIP6.1□□□□□ -1.43
HMGB1-204ENST00000399489 FAM20CQ8IXL6 584 aa6.1□□□□□ -1.43
HMGB1-204ENST00000399489 FAM83CQ9BQN1 747 aa6.1□□□□□ -1.43
HMGB1-204ENST00000399489 SOX13Q9UN79 622 aa6.1□□□□□ -1.43
HMGB1-204ENST00000399489 ADAM11O75078 769 aa6.09□□□□□ -1.43
HMGB1-204ENST00000399489 ABL1P00519 1130 aa6.09□□□□□ -1.43
HMGB1-204ENST00000399489 BMP3P12645 472 aa6.09□□□□□ -1.43
HMGB1-204ENST00000399489 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.09□□□□□ -1.43
HMGB1-204ENST00000399489 TXNDC2Q86VQ3 553 aa6.09□□□□□ -1.43
HMGB1-204ENST00000399489 TRIM42Q8IWZ5 723 aa6.09□□□□□ -1.43
HMGB1-204ENST00000399489 ASAP3Q8TDY4 903 aa6.09□□□□□ -1.43
HMGB1-204ENST00000399489 NXPE3Q969Y0 559 aa6.09□□□□□ -1.43
HMGB1-204ENST00000399489 CHRDQ9H2X0 955 aa6.09□□□□□ -1.43
HMGB1-204ENST00000399489 CYP4F12Q9HCS2 524 aa6.09□□□□□ -1.43
HMGB1-204ENST00000399489 TMEM88BA6NKF7 163 aa6.08□□□□□ -1.44
HMGB1-204ENST00000399489 NFKBIEO00221 500 aa6.08□□□□□ -1.44
HMGB1-204ENST00000399489 TNFRSF21O75509 655 aa6.08□□□□□ -1.44
HMGB1-204ENST00000399489 NEFLP07196 543 aa6.08□□□□□ -1.44
HMGB1-204ENST00000399489 ACPPP15309 386 aa6.08□□□□□ -1.44
HMGB1-204ENST00000399489 NPR3P17342 541 aa6.08□□□□□ -1.44
HMGB1-204ENST00000399489 CD97P48960 835 aa6.08□□□□□ -1.44
HMGB1-204ENST00000399489 NUTM2GQ5VZR2 741 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms