RNA–Protein interactions for RNA: ENST00000335725.8

TDP1-201, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 3,702 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-201ENST00000335725 Q4G0T1 1027 aa9.8□□□□□ -0.84
TDP1-201ENST00000335725 ELOA2Q8IYF1 753 aaPredicted RBP9.8□□□□□ -0.84
TDP1-201ENST00000335725 AFAP1Q8N556 730 aa9.8□□□□□ -0.84
TDP1-201ENST00000335725 LSM14AQ8ND56 463 aaKnown RBP9.8□□□□□ -0.84
TDP1-201ENST00000335725 VCPKMTQ9H867 229 aa9.8□□□□□ -0.84
TDP1-201ENST00000335725 TRPC6Q9Y210 931 aa9.8□□□□□ -0.84
TDP1-201ENST00000335725 TMEM98Q9Y2Y6 226 aa9.8□□□□□ -0.84
TDP1-201ENST00000335725 SYT1P21579 422 aa9.8□□□□□ -0.84
TDP1-201ENST00000335725 ANO6Q4KMQ2 910 aa9.8□□□□□ -0.84
TDP1-201ENST00000335725 CLIC6Q96NY7 704 aa9.8□□□□□ -0.84
TDP1-201ENST00000335725 VIPAS39Q9H9C1 493 aa9.8□□□□□ -0.84
TDP1-201ENST00000335725 TOP2BQ02880 1626 aa9.79□□□□□ -0.84
TDP1-201ENST00000335725 ERCC6Q03468 1493 aa9.79□□□□□ -0.84
TDP1-201ENST00000335725 RNF40O75150 1001 aa9.79□□□□□ -0.84
TDP1-201ENST00000335725 SMNDC1O75940 238 aaKnown RBP eCLIP9.79□□□□□ -0.84
TDP1-201ENST00000335725 ZNF165P49910 485 aa9.79□□□□□ -0.84
TDP1-201ENST00000335725 GALNT15Q8N3T1 639 aa9.79□□□□□ -0.84
TDP1-201ENST00000335725 ACTR5Q9H9F9 607 aaPredicted RBP9.79□□□□□ -0.84
TDP1-201ENST00000335725 SLC39A2Q9NP94 309 aa9.79□□□□□ -0.84
TDP1-201ENST00000335725 ANKIB1Q9P2G1 1089 aa9.79□□□□□ -0.84
TDP1-201ENST00000335725 L1RE1Q9UN81 338 aa9.79□□□□□ -0.84
TDP1-201ENST00000335725 VIL1P09327 827 aaKnown RBP9.79□□□□□ -0.84
TDP1-201ENST00000335725 KIAA0753Q2KHM9 967 aa9.79□□□□□ -0.84
TDP1-201ENST00000335725 BHMTQ93088 406 aa9.79□□□□□ -0.84
TDP1-201ENST00000335725 NACA2Q9H009 215 aa9.79□□□□□ -0.84
TDP1-201ENST00000335725 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.79□□□□□ -0.84
TDP1-201ENST00000335725 FHOD3Q2V2M9 1422 aa9.79□□□□□ -0.84
TDP1-201ENST00000335725 KRT38O76015 456 aa9.79□□□□□ -0.84
TDP1-201ENST00000335725 LUC7L3O95232 432 aaKnown RBP9.79□□□□□ -0.84
TDP1-201ENST00000335725 E4F1Q66K89 784 aaPredicted RBP9.79□□□□□ -0.84
TDP1-201ENST00000335725 SYNE3Q6ZMZ3 975 aa9.79□□□□□ -0.84
TDP1-201ENST00000335725 FAM76AQ8TAV0 307 aa9.79□□□□□ -0.84
TDP1-201ENST00000335725 BECN2A8MW95 431 aa9.78□□□□□ -0.84
TDP1-201ENST00000335725 HARSP12081 509 aaKnown RBP9.78□□□□□ -0.84
TDP1-201ENST00000335725 EIF4BP23588 611 aaKnown RBP9.78□□□□□ -0.84
TDP1-201ENST00000335725 PPFIA1Q13136 1202 aa9.78□□□□□ -0.84
TDP1-201ENST00000335725 KIRREL3Q8IZU9 778 aa9.78□□□□□ -0.84
TDP1-201ENST00000335725 MPHOSPH6Q99547 160 aaKnown RBP9.78□□□□□ -0.84
TDP1-201ENST00000335725 ITGB1BP2Q9UKP3 347 aa9.78□□□□□ -0.84
TDP1-201ENST00000335725 CNPY2Q9Y2B0 182 aa9.78□□□□□ -0.84
TDP1-201ENST00000335725 UHRF1BP1Q6BDS2 1440 aa9.78□□□□□ -0.84
TDP1-201ENST00000335725 CCDC141Q6ZP82 1450 aa9.78□□□□□ -0.84
TDP1-201ENST00000335725 TRPC1P48995 793 aa9.78□□□□□ -0.84
TDP1-201ENST00000335725 CASP8Q14790 479 aa9.78□□□□□ -0.84
TDP1-201ENST00000335725 BZW1Q7L1Q6 419 aaKnown RBP9.78□□□□□ -0.84
TDP1-201ENST00000335725 TMC6Q7Z403 805 aa9.78□□□□□ -0.84
TDP1-201ENST00000335725 FAM163AQ96GL9 167 aaPredicted RBP9.78□□□□□ -0.84
TDP1-201ENST00000335725 RRP7BPQ9NSQ0 103 aa9.78□□□□□ -0.84
TDP1-201ENST00000335725 TPCN1Q9ULQ1 816 aa9.78□□□□□ -0.84
TDP1-201ENST00000335725 RPAP1Q9BWH6 1393 aaPredicted RBP9.78□□□□□ -0.84
TDP1-201ENST00000335725 B4DLN1 442 aa9.78□□□□□ -0.84
TDP1-201ENST00000335725 N4BP1O75113 896 aaKnown RBP9.78□□□□□ -0.84
TDP1-201ENST00000335725 PHACTR2O75167 634 aa9.78□□□□□ -0.84
TDP1-201ENST00000335725 SMIM24O75264 130 aa9.78□□□□□ -0.84
TDP1-201ENST00000335725 XBP1P17861 261 aa9.78□□□□□ -0.84
TDP1-201ENST00000335725 ATP5JP18859 108 aa9.78□□□□□ -0.84
TDP1-201ENST00000335725 PSME1Q06323 249 aa9.78□□□□□ -0.84
TDP1-201ENST00000335725 LZICQ8WZA0 190 aa9.78□□□□□ -0.84
TDP1-201ENST00000335725 TNMDQ9H2S6 317 aa9.78□□□□□ -0.84
TDP1-201ENST00000335725 SLC40A1Q9NP59 571 aa9.78□□□□□ -0.84
TDP1-201ENST00000335725 RAB21Q9UL25 225 aa9.78□□□□□ -0.84
TDP1-201ENST00000335725 MAGEA10P43363 369 aaPredicted RBP9.77□□□□□ -0.85
TDP1-201ENST00000335725 IRAK1P51617 712 aa9.77□□□□□ -0.85
TDP1-201ENST00000335725 POSTNQ15063 836 aa9.77□□□□□ -0.85
TDP1-201ENST00000335725 WDR78Q5VTH9 848 aa9.77□□□□□ -0.85
TDP1-201ENST00000335725 CCDC65Q8IXS2 484 aa9.77□□□□□ -0.85
TDP1-201ENST00000335725 OSBPL5Q9H0X9 879 aaPredicted RBP9.77□□□□□ -0.85
TDP1-201ENST00000335725 HDAC6Q9UBN7 1215 aa9.77□□□□□ -0.85
TDP1-201ENST00000335725 PPP1R12BO60237 982 aaPredicted RBP9.77□□□□□ -0.85
TDP1-201ENST00000335725 VDRP11473 427 aa9.77□□□□□ -0.85
TDP1-201ENST00000335725 GNAT1P11488 350 aa9.77□□□□□ -0.85
TDP1-201ENST00000335725 ZFXP17010 805 aaPredicted RBP9.77□□□□□ -0.85
TDP1-201ENST00000335725 AARSP49588 968 aaKnown RBP eCLIP9.77□□□□□ -0.85
TDP1-201ENST00000335725 FOXD4Q12950 439 aaPredicted RBP9.77□□□□□ -0.85
TDP1-201ENST00000335725 ATP11CQ8NB49 1132 aa9.77□□□□□ -0.85
TDP1-201ENST00000335725 DHRS1Q96LJ7 313 aa9.77□□□□□ -0.85
TDP1-201ENST00000335725 MTRQ99707 1265 aa9.77□□□□□ -0.85
TDP1-201ENST00000335725 PARP3Q9Y6F1 533 aa9.77□□□□□ -0.85
TDP1-201ENST00000335725 M0R2C6 588 aa9.77□□□□□ -0.85
TDP1-201ENST00000335725 FAM200BP0CF97 657 aa9.77□□□□□ -0.85
TDP1-201ENST00000335725 SFPQP23246 707 aaKnown RBP eCLIP9.77□□□□□ -0.85
TDP1-201ENST00000335725 FLT3P36888 993 aa9.77□□□□□ -0.85
TDP1-201ENST00000335725 PSMD7P51665 324 aa9.77□□□□□ -0.85
TDP1-201ENST00000335725 CCHCR1Q8TD31 782 aa9.77□□□□□ -0.85
TDP1-201ENST00000335725 SRCIN1Q9C0H9 1055 aa9.77□□□□□ -0.85
TDP1-201ENST00000335725 DDX19AQ9NUU7 478 aaKnown RBP9.77□□□□□ -0.85
TDP1-201ENST00000335725 KIF4AO95239 1232 aa9.76□□□□□ -0.85
TDP1-201ENST00000335725 PPP2R1AP30153 589 aa9.76□□□□□ -0.85
TDP1-201ENST00000335725 PABPC4Q13310 644 aaKnown RBP eCLIP9.76□□□□□ -0.85
TDP1-201ENST00000335725 E2F5Q15329 346 aa9.76□□□□□ -0.85
TDP1-201ENST00000335725 APBB1IPQ7Z5R6 666 aaPredicted RBP9.76□□□□□ -0.85
TDP1-201ENST00000335725 TBC1D31Q96DN5 1066 aa9.76□□□□□ -0.85
TDP1-201ENST00000335725 BARX2Q9UMQ3 279 aaPredicted RBP9.76□□□□□ -0.85
TDP1-201ENST00000335725 EIF3HO15372 352 aaKnown RBP eCLIP9.76□□□□□ -0.85
TDP1-201ENST00000335725 FIBPO43427 364 aa9.76□□□□□ -0.85
TDP1-201ENST00000335725 ZSCAN22P10073 491 aaPredicted RBP9.76□□□□□ -0.85
TDP1-201ENST00000335725 RPL13P26373 211 aaKnown RBP9.76□□□□□ -0.85
TDP1-201ENST00000335725 NEK4P51957 841 aa9.76□□□□□ -0.85
TDP1-201ENST00000335725 CUL4BQ13620 913 aa9.76□□□□□ -0.85
TDP1-201ENST00000335725 CAPS2Q9BXY5 557 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms