RNA–Protein interactions for RNA: YPR135W

CTF4, Transcript of Chromatin-associated protein, yeastyeast

Gene CTF4, Length 2,784 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CTF4YPR135W PHR1P05066 565 aaKnown RBP RIP-Chip data2.06□□□□□ -2.08not detected
CTF4YPR135W RPP2AP05319 106 aaKnown RBP2.06□□□□□ -2.08
CTF4YPR135W GCR1P07261 785 aa2.06□□□□□ -2.08
CTF4YPR135W POL3P15436 1097 aa2.06□□□□□ -2.08
CTF4YPR135W CAD1P24813 409 aaKnown RBP2.06□□□□□ -2.08
CTF4YPR135W KAR4P25583 335 aa2.06□□□□□ -2.08
CTF4YPR135W RAD27P26793 382 aa2.06□□□□□ -2.08
CTF4YPR135W URK1P27515 501 aa2.06□□□□□ -2.08
CTF4YPR135W SRP40P32583 406 aaPredicted RBP2.06□□□□□ -2.08
CTF4YPR135W YKL091CP33324 310 aaKnown RBP2.06□□□□□ -2.08
CTF4YPR135W YJR142WP47173 342 aa2.06□□□□□ -2.08
CTF4YPR135W MUK1Q02866 612 aa2.06□□□□□ -2.08
CTF4YPR135W CDA1Q06702 301 aa2.06□□□□□ -2.08
CTF4YPR135W WRS1Q12109 432 aaKnown RBP2.06□□□□□ -2.08
CTF4YPR135W OSW2Q12202 724 aa2.06□□□□□ -2.08
CTF4YPR135W RAD2P07276 1031 aa2.05□□□□□ -2.08
CTF4YPR135W MCM3P24279 971 aaKnown RBP2.05□□□□□ -2.08
CTF4YPR135W EUG1P32474 517 aa2.05□□□□□ -2.08
CTF4YPR135W PEX2P32800 271 aa2.05□□□□□ -2.08
CTF4YPR135W RGT1P32862 1170 aa2.05□□□□□ -2.08
CTF4YPR135W YAP1801P38856 637 aa2.05□□□□□ -2.08
CTF4YPR135W GEM1P39722 662 aa2.05□□□□□ -2.08
CTF4YPR135W SPP382Q06411 708 aaPredicted RBP2.05□□□□□ -2.08
CTF4YPR135W OMS1Q06668 471 aa2.05□□□□□ -2.08
CTF4YPR135W WHI4Q07655 649 aaKnown RBP2.05□□□□□ -2.08
CTF4YPR135W YOL057WQ08225 711 aa2.05□□□□□ -2.08
CTF4YPR135W SSB1P11484 613 aaKnown RBP2.05□□□□□ -2.08
CTF4YPR135W PPZ1P26570 692 aa2.05□□□□□ -2.08
CTF4YPR135W POT1P27796 417 aaKnown RBP RIP-Chip data2.05□□□□□ -2.08not detected
CTF4YPR135W SYN8P31377 255 aa2.05□□□□□ -2.08
CTF4YPR135W MGM1P32266 881 aa2.05□□□□□ -2.08
CTF4YPR135W MTH1P35198 433 aa2.05□□□□□ -2.08
CTF4YPR135W RRP14P36080 434 aaKnown RBP2.05□□□□□ -2.08
CTF4YPR135W FPR3P38911 411 aaKnown RBP2.05□□□□□ -2.08
CTF4YPR135W CCC2P38995 1004 aa2.05□□□□□ -2.08
CTF4YPR135W SSB2P40150 613 aaKnown RBP2.05□□□□□ -2.08
CTF4YPR135W IRC4Q03036 179 aa2.05□□□□□ -2.08
CTF4YPR135W SWI1P09547 1314 aa2.05□□□□□ -2.08
CTF4YPR135W ERG4P25340 473 aa2.04□□□□□ -2.08
CTF4YPR135W RER2P35196 286 aa2.04□□□□□ -2.08
CTF4YPR135W SNF7P39929 240 aaKnown RBP2.04□□□□□ -2.08
CTF4YPR135W RPS26AP39938 119 aaKnown RBP2.04□□□□□ -2.08
CTF4YPR135W RPS26BP39939 119 aaKnown RBP2.04□□□□□ -2.08
CTF4YPR135W FMP10P40098 244 aa2.04□□□□□ -2.08
CTF4YPR135W SUB1P54000 292 aaKnown RBP2.04□□□□□ -2.08
CTF4YPR135W SEN1Q00416 2231 aaKnown RBP2.04□□□□□ -2.08
CTF4YPR135W CYC8P14922 966 aa2.04□□□□□ -2.08
CTF4YPR135W PER1P25625 357 aa2.04□□□□□ -2.08
CTF4YPR135W MNR2P35724 969 aa2.04□□□□□ -2.08
CTF4YPR135W ARP1P38696 384 aa2.04□□□□□ -2.08
CTF4YPR135W STB5P38699 743 aa2.04□□□□□ -2.08
CTF4YPR135W TPM2P40414 161 aa2.04□□□□□ -2.08
CTF4YPR135W SKP2P42843 763 aa2.04□□□□□ -2.08
CTF4YPR135W GND2P53319 492 aa2.04□□□□□ -2.08
CTF4YPR135W VPS72Q03388 795 aa2.04□□□□□ -2.08
CTF4YPR135W MFB1Q04922 465 aa2.04□□□□□ -2.08
CTF4YPR135W ACF2Q12168 779 aa2.04□□□□□ -2.08
CTF4YPR135W TRM13Q12383 476 aa2.04□□□□□ -2.08
CTF4YPR135W SSD1P24276 1250 aaKnown RBP RIP-Chip data2.04□□□□□ -2.08not detected
CTF4YPR135W PDR3P33200 976 aa2.04□□□□□ -2.08
CTF4YPR135W NOC2P39744 710 aaKnown RBP2.04□□□□□ -2.08
CTF4YPR135W PSP2P50109 593 aaKnown RBP2.04□□□□□ -2.08
CTF4YPR135W FCP1Q03254 732 aa2.04□□□□□ -2.08
CTF4YPR135W PSF3Q12146 194 aa2.04□□□□□ -2.08
CTF4YPR135W PET112P33893 541 aa2.03□□□□□ -2.08
CTF4YPR135W AKL1P38080 1108 aaKnown RBP2.03□□□□□ -2.08
CTF4YPR135W MNN1P39106 762 aa2.03□□□□□ -2.08
CTF4YPR135W UBP12P39538 1254 aa2.03□□□□□ -2.08
CTF4YPR135W HUL5P53119 910 aa2.03□□□□□ -2.08
CTF4YPR135W TIM44Q01852 431 aa2.03□□□□□ -2.08
CTF4YPR135W THI3Q07471 609 aa2.03□□□□□ -2.08
CTF4YPR135W CDC53Q12018 815 aaKnown RBP2.03□□□□□ -2.08
CTF4YPR135W MYO1P08964 1928 aa2.03□□□□□ -2.08
CTF4YPR135W IMG2P25642 146 aaPredicted RBP2.03□□□□□ -2.09
CTF4YPR135W YHR020WP38708 688 aaKnown RBP2.03□□□□□ -2.09
CTF4YPR135W YER158CP40095 573 aa2.03□□□□□ -2.09
CTF4YPR135W SVL3Q03088 825 aaKnown RBP2.03□□□□□ -2.09
CTF4YPR135W GCN1P33892 2672 aaKnown RBP2.03□□□□□ -2.09
CTF4YPR135W HSF1P10961 833 aa2.02□□□□□ -2.09
CTF4YPR135W STI1P15705 589 aaKnown RBP RIP-Chip data2.02□□□□□ -2.09not detected
CTF4YPR135W YUR1P26725 428 aa2.02□□□□□ -2.09
CTF4YPR135W TIM23P32897 222 aa2.02□□□□□ -2.09
CTF4YPR135W MET13P53128 600 aa2.02□□□□□ -2.09
CTF4YPR135W EMI2Q04409 500 aaKnown RBP2.02□□□□□ -2.09
CTF4YPR135W POB3Q04636 552 aaKnown RBP2.02□□□□□ -2.09
CTF4YPR135W HRQ1Q05549 1077 aa2.02□□□□□ -2.09
CTF4YPR135W TMA46Q12000 345 aaKnown RBP2.02□□□□□ -2.09
CTF4YPR135W SAC3P46674 1301 aa2.02□□□□□ -2.09
CTF4YPR135W TRP2P00899 507 aaKnown RBP2.02□□□□□ -2.09
CTF4YPR135W RPA135P22138 1203 aaKnown RBP2.02□□□□□ -2.09
CTF4YPR135W YKL151CP36059 337 aa2.02□□□□□ -2.09
CTF4YPR135W YKL069WP36088 180 aa2.02□□□□□ -2.09
CTF4YPR135W SFB3P38810 929 aa2.02□□□□□ -2.09
CTF4YPR135W URM1P40554 99 aaPredicted RBP2.02□□□□□ -2.09
CTF4YPR135W YJL049WP47048 450 aa2.02□□□□□ -2.09
CTF4YPR135W DAK1P54838 584 aaKnown RBP2.02□□□□□ -2.09
CTF4YPR135W EAF1Q06337 982 aa2.02□□□□□ -2.09
CTF4YPR135W SWI6P09959 803 aa2.01□□□□□ -2.09
CTF4YPR135W YKR018CP36114 725 aa2.01□□□□□ -2.09
CTF4YPR135W ECM21P38167 1117 aaKnown RBP2.01□□□□□ -2.09
Retrieved 100 of 5,963 RNA–protein pairs in 63.5 ms