RNA–Protein interactions for RNA: YNR060W

FRE4, Transcript of Ferric reductase, yeast

Gene FRE4, Length 2,160 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
FRE4	YNR060W	NSG2	P53898	299 aa		3.87	□□□□□ -1.79
FRE4	YNR060W	LEE1	Q02799	301 aa	Known RBP	3.87	□□□□□ -1.79
FRE4	YNR060W	XYL2	Q07993	356 aa		3.87	□□□□□ -1.79
FRE4	YNR060W	TRM8	Q12009	286 aa		3.87	□□□□□ -1.79
FRE4	YNR060W	KCS1	Q12494	1050 aa		3.87	□□□□□ -1.79
FRE4	YNR060W	CLC1	P17891	233 aa		3.86	□□□□□ -1.79
FRE4	YNR060W	NAM7	P30771	971 aa	Known RBP	3.86	□□□□□ -1.79
FRE4	YNR060W	MF(ALPHA)2	P32435	120 aa		3.86	□□□□□ -1.79
FRE4	YNR060W	XRS2	P33301	854 aa		3.86	□□□□□ -1.79
FRE4	YNR060W	CCZ1	P38273	704 aa		3.86	□□□□□ -1.79
FRE4	YNR060W	SRP68	P38687	599 aa	Known RBP	3.86	□□□□□ -1.79
FRE4	YNR060W	RIX1	P38883	763 aa	Predicted RBP	3.86	□□□□□ -1.79
FRE4	YNR060W	PUG1	P40100	303 aa		3.86	□□□□□ -1.79
FRE4	YNR060W	VID28	P40547	921 aa		3.86	□□□□□ -1.79
FRE4	YNR060W	IMA5	P40884	581 aa		3.86	□□□□□ -1.79
FRE4	YNR060W	NOP15	P53927	220 aa	Predicted RBP	3.86	□□□□□ -1.79
FRE4	YNR060W	MTD1	Q02046	320 aa	Known RBP	3.86	□□□□□ -1.79
FRE4	YNR060W	YMR018W	Q04364	514 aa		3.86	□□□□□ -1.79
FRE4	YNR060W	TDA9	Q04545	1251 aa		3.86	□□□□□ -1.79
FRE4	YNR060W	NGL1	Q08213	363 aa	Known RBP	3.86	□□□□□ -1.79
FRE4	YNR060W	VHS3	Q08438	674 aa		3.86	□□□□□ -1.79
FRE4	YNR060W	PUS7	Q08647	676 aa	Known RBP	3.86	□□□□□ -1.79
FRE4	YNR060W	ADP1	P25371	1049 aa		3.86	□□□□□ -1.79
FRE4	YNR060W	NGG1	P32494	702 aa		3.86	□□□□□ -1.79
FRE4	YNR060W	ECM32	P32644	1121 aa	Known RBP	3.86	□□□□□ -1.79
FRE4	YNR060W	TFC3	P34111	1160 aa		3.86	□□□□□ -1.79
FRE4	YNR060W	NOP4	P37838	685 aa	Known RBP	3.86	□□□□□ -1.79
FRE4	YNR060W	SET5	P38890	526 aa	Known RBP	3.86	□□□□□ -1.79
FRE4	YNR060W	STL1	P39932	569 aa		3.86	□□□□□ -1.79
FRE4	YNR060W	MAD2	P40958	196 aa		3.86	□□□□□ -1.79
FRE4	YNR060W	HFM1	P51979	1187 aa		3.86	□□□□□ -1.79
FRE4	YNR060W	PCL10	P53124	433 aa		3.86	□□□□□ -1.79
FRE4	YNR060W	TNA1	P53322	534 aa		3.86	□□□□□ -1.79
FRE4	YNR060W	HOL1	P53389	586 aa		3.86	□□□□□ -1.79
FRE4	YNR060W	YKU80	Q04437	629 aa		3.86	□□□□□ -1.79
FRE4	YNR060W	YSH1	Q06224	779 aa	Predicted RBP	3.86	□□□□□ -1.79
FRE4	YNR060W	SPN1	Q06505	410 aa	Predicted RBP	3.86	□□□□□ -1.79
FRE4	YNR060W	HRK1	Q08732	759 aa	Known RBP	3.86	□□□□□ -1.79
FRE4	YNR060W	RTK1	Q12100	620 aa	Predicted RBP	3.86	□□□□□ -1.79
FRE4	YNR060W	HAL9	Q12180	1030 aa		3.86	□□□□□ -1.79
FRE4	YNR060W	SCM3	Q12334	223 aa		3.86	□□□□□ -1.79
FRE4	YNR060W	TY1B-A	O13527	1196 aa	Known RBP	3.85	□□□□□ -1.79
FRE4	YNR060W	RPS4A	P0CX35	261 aa	Known RBP	3.85	□□□□□ -1.79
FRE4	YNR060W	RPS4B	P0CX36	261 aa	Known RBP	3.85	□□□□□ -1.79
FRE4	YNR060W	GUK1	P15454	187 aa	Known RBP	3.85	□□□□□ -1.79
FRE4	YNR060W	SPO16	P17122	198 aa		3.85	□□□□□ -1.79
FRE4	YNR060W	CBF2	P32504	956 aa		3.85	□□□□□ -1.79
FRE4	YNR060W	FLR1	P38124	548 aa		3.85	□□□□□ -1.79
FRE4	YNR060W	ECM21	P38167	1117 aa	Known RBP	3.85	□□□□□ -1.79
FRE4	YNR060W	SWD1	P39706	426 aa		3.85	□□□□□ -1.79
FRE4	YNR060W	TPA1	P40032	644 aa	Known RBP	3.85	□□□□□ -1.79
FRE4	YNR060W	SCS2	P40075	244 aa	Known RBP	3.85	□□□□□ -1.79
FRE4	YNR060W	VHR1	P40522	640 aa		3.85	□□□□□ -1.79
FRE4	YNR060W	SMK1	P41808	388 aa		3.85	□□□□□ -1.79
FRE4	YNR060W	IRC6	P43615	237 aa		3.85	□□□□□ -1.79
FRE4	YNR060W	ZIP2	P53061	704 aa		3.85	□□□□□ -1.79
FRE4	YNR060W	SPC19	Q03954	165 aa		3.85	□□□□□ -1.79
FRE4	YNR060W	SXM1	Q04175	944 aa	Known RBP	3.85	□□□□□ -1.79
FRE4	YNR060W	CRR1	Q05790	422 aa		3.85	□□□□□ -1.79
FRE4	YNR060W	VID22	Q05934	901 aa		3.85	□□□□□ -1.79
FRE4	YNR060W	YLR407W	Q06070	228 aa		3.85	□□□□□ -1.79
FRE4	YNR060W	MCA1	Q08601	432 aa		3.85	□□□□□ -1.79
FRE4	YNR060W	YVC1	Q12324	675 aa		3.85	□□□□□ -1.79
FRE4	YNR060W	MRP7	P12687	371 aa		3.85	□□□□□ -1.79
FRE4	YNR060W	UBC1	P21734	215 aa	Known RBP	3.85	□□□□□ -1.79
FRE4	YNR060W	RSC6	P25632	483 aa		3.85	□□□□□ -1.79
FRE4	YNR060W	RPC82	P32349	654 aa		3.85	□□□□□ -1.79
FRE4	YNR060W	TGL1	P34163	548 aa		3.85	□□□□□ -1.79
FRE4	YNR060W	AKL1	P38080	1108 aa	Known RBP	3.85	□□□□□ -1.79
FRE4	YNR060W	IFA38	P38286	347 aa		3.85	□□□□□ -1.79
FRE4	YNR060W	SEC9	P40357	651 aa		3.85	□□□□□ -1.79
FRE4	YNR060W	TIM10	P87108	93 aa		3.85	□□□□□ -1.79
FRE4	YNR060W	YKR011C	Q02209	353 aa		3.85	□□□□□ -1.79
FRE4	YNR060W	DIN7	Q12086	430 aa		3.85	□□□□□ -1.79
FRE4	YNR060W	YOR022C	Q12204	715 aa		3.85	□□□□□ -1.79
FRE4	YNR060W	GPR1	Q12361	961 aa		3.85	□□□□□ -1.79
FRE4	YNR060W	RVB2	Q12464	471 aa	Known RBP	3.85	□□□□□ -1.79
FRE4	YNR060W	NOT3	P06102	836 aa	Known RBP	3.84	□□□□□ -1.79
FRE4	YNR060W	FBP1	P09201	348 aa		3.84	□□□□□ -1.79
FRE4	YNR060W	MCM3	P24279	971 aa	Known RBP	3.84	□□□□□ -1.79
FRE4	YNR060W	RPD3	P32561	433 aa		3.84	□□□□□ -1.79
FRE4	YNR060W	SEG2	P34250	1132 aa		3.84	□□□□□ -1.79
FRE4	YNR060W	STT3	P39007	718 aa	Known RBP	3.84	□□□□□ -1.79
FRE4	YNR060W	PIK1	P39104	1066 aa		3.84	□□□□□ -1.79
FRE4	YNR060W	SAW1	P39735	261 aa		3.84	□□□□□ -1.79
FRE4	YNR060W	YER010C	P40011	234 aa		3.84	□□□□□ -1.79
FRE4	YNR060W	KAP123	P40069	1113 aa	Known RBP	3.84	□□□□□ -1.79
FRE4	YNR060W	CEP3	P40969	608 aa		3.84	□□□□□ -1.79
FRE4	YNR060W	NNF2	P53253	936 aa		3.84	□□□□□ -1.79
FRE4	YNR060W	MRPL13	Q02204	264 aa		3.84	□□□□□ -1.79
FRE4	YNR060W	MEH1	Q02205	184 aa		3.84	□□□□□ -1.79
FRE4	YNR060W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	3.84	□□□□□ -1.79	not detected
FRE4	YNR060W	PSF3	Q12146	194 aa		3.84	□□□□□ -1.79
FRE4	YNR060W	NSI1	Q12457	570 aa		3.84	□□□□□ -1.79
FRE4	YNR060W	PGA3	Q12746	312 aa	Known RBP	3.84	□□□□□ -1.79
FRE4	YNR060W	APE4	P38821	490 aa		3.83	□□□□□ -1.8
FRE4	YNR060W	OYE3	P41816	400 aa	Predicted RBP	3.83	□□□□□ -1.8
FRE4	YNR060W	SHR5	P41912	237 aa		3.83	□□□□□ -1.8
FRE4	YNR060W	RMD8	P43620	662 aa		3.83	□□□□□ -1.8
FRE4	YNR060W	YGR250C	P53316	781 aa	Known RBP	3.83	□□□□□ -1.8

Retrieved 100 of 5,963 RNA–protein pairs in 22.1 ms