RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 GRNP28799 593 aaKnown RBP10.03□□□□□ -0.8
VIM-207ENST00000495528 EDEM1Q92611 657 aa10.03□□□□□ -0.8
VIM-207ENST00000495528 MIA2Q96PC5 1412 aa10.03□□□□□ -0.8
VIM-207ENST00000495528 MBIPQ9NS73 344 aa10.03□□□□□ -0.8
VIM-207ENST00000495528 CCDC141Q6ZP82 1450 aa10.03□□□□□ -0.8
VIM-207ENST00000495528 C2CD2LO14523 706 aa10.02□□□□□ -0.81
VIM-207ENST00000495528 NPR3P17342 541 aa10.02□□□□□ -0.81
VIM-207ENST00000495528 LAMC2Q13753 1193 aa10.02□□□□□ -0.81
VIM-207ENST00000495528 PIK3R5Q8WYR1 880 aa10.02□□□□□ -0.81
VIM-207ENST00000495528 SLC30A3Q99726 388 aa10.02□□□□□ -0.81
VIM-207ENST00000495528 PRR12Q9ULL5 1215 aa10.02□□□□□ -0.81
VIM-207ENST00000495528 PZPP20742 1482 aa10.02□□□□□ -0.81
VIM-207ENST00000495528 SHANK2Q9UPX8 1470 aa10.02□□□□□ -0.81
VIM-207ENST00000495528 SPEM2Q0P670 501 aa10.01□□□□□ -0.81
VIM-207ENST00000495528 ECM1Q16610 540 aa10.01□□□□□ -0.81
VIM-207ENST00000495528 ALKBH2Q6NS38 261 aa10.01□□□□□ -0.81
VIM-207ENST00000495528 KRT25Q7Z3Z0 450 aa10.01□□□□□ -0.81
VIM-207ENST00000495528 CCDC87Q9NVE4 849 aa10.01□□□□□ -0.81
VIM-207ENST00000495528 NCOA2Q15596 1464 aa10.01□□□□□ -0.81
VIM-207ENST00000495528 CAMSAP2Q08AD1 1489 aa10□□□□□ -0.81
VIM-207ENST00000495528 KCNQ4P56696 695 aa10□□□□□ -0.81
VIM-207ENST00000495528 NUDT16Q96DE0 195 aaKnown RBP10□□□□□ -0.81
VIM-207ENST00000495528 GZF1Q9H116 711 aaPredicted RBP10□□□□□ -0.81
VIM-207ENST00000495528 FAM13BQ9NYF5 915 aa10□□□□□ -0.81
VIM-207ENST00000495528 POLIQ9UNA4 740 aa10□□□□□ -0.81
VIM-207ENST00000495528 NSFL1CQ9UNZ2 370 aaKnown RBP10□□□□□ -0.81
VIM-207ENST00000495528 CPS1P31327 1500 aa10□□□□□ -0.81
VIM-207ENST00000495528 KDM5DQ9BY66 1539 aa10□□□□□ -0.81
VIM-207ENST00000495528 NEURL4Q96JN8 1562 aa10□□□□□ -0.81
VIM-207ENST00000495528 ZBTB7CA1YPR0 619 aa9.99□□□□□ -0.81
VIM-207ENST00000495528 ARHGAP4P98171 946 aa9.99□□□□□ -0.81
VIM-207ENST00000495528 BHMTQ93088 406 aa9.99□□□□□ -0.81
VIM-207ENST00000495528 NPHP4O75161 1426 aaPredicted RBP9.99□□□□□ -0.81
VIM-207ENST00000495528 NLRP1Q9C000 1473 aa9.98□□□□□ -0.81
VIM-207ENST00000495528 FZD6O60353 706 aa9.98□□□□□ -0.81
VIM-207ENST00000495528 XYLBO75191 536 aa9.98□□□□□ -0.81
VIM-207ENST00000495528 ADAMTS2O95450 1211 aa9.98□□□□□ -0.81
VIM-207ENST00000495528 PDGFAP04085 211 aa9.98□□□□□ -0.81
VIM-207ENST00000495528 FAM182BQ5T319 152 aa9.98□□□□□ -0.81
VIM-207ENST00000495528 PNMA5Q96PV4 448 aa9.98□□□□□ -0.81
VIM-207ENST00000495528 KCNMB2Q9Y691 235 aa9.98□□□□□ -0.81
VIM-207ENST00000495528 MED14O60244 1454 aa9.98□□□□□ -0.81
VIM-207ENST00000495528 VWDEQ8N2E2 1590 aa9.97□□□□□ -0.81
VIM-207ENST00000495528 UGGT1Q9NYU2 1555 aa9.97□□□□□ -0.81
VIM-207ENST00000495528 A6NHS1 94 aa9.97□□□□□ -0.81
VIM-207ENST00000495528 SASH3O75995 380 aa9.97□□□□□ -0.81
VIM-207ENST00000495528 MAP2K3P46734 347 aa9.97□□□□□ -0.81
VIM-207ENST00000495528 PCBP4P57723 403 aaKnown RBP9.97□□□□□ -0.81
VIM-207ENST00000495528 SRSF11Q05519 484 aaKnown RBP9.97□□□□□ -0.81
VIM-207ENST00000495528 CCINQ13939 588 aa9.97□□□□□ -0.81
VIM-207ENST00000495528 TRIP4Q15650 581 aaPredicted RBP9.97□□□□□ -0.81
VIM-207ENST00000495528 C8orf34Q49A92 452 aa9.97□□□□□ -0.81
VIM-207ENST00000495528 GSX2Q9BZM3 304 aa9.97□□□□□ -0.81
VIM-207ENST00000495528 BRPF3Q9ULD4 1205 aa9.97□□□□□ -0.81
VIM-207ENST00000495528 FAM135AQ9P2D6 1515 aa9.97□□□□□ -0.81
VIM-207ENST00000495528 PCSK2P16519 638 aa9.96□□□□□ -0.82
VIM-207ENST00000495528 TARSP26639 723 aaKnown RBP9.96□□□□□ -0.82
VIM-207ENST00000495528 MZF1P28698 734 aaPredicted RBP9.96□□□□□ -0.82
VIM-207ENST00000495528 TRIM26Q12899 539 aaPredicted RBP9.96□□□□□ -0.82
VIM-207ENST00000495528 TTC16Q8NEE8 873 aa9.96□□□□□ -0.82
VIM-207ENST00000495528 NFKB1P19838 968 aa9.95□□□□□ -0.82
VIM-207ENST00000495528 SYT9Q86SS6 491 aa9.95□□□□□ -0.82
VIM-207ENST00000495528 GGNBP2Q9H3C7 697 aa9.95□□□□□ -0.82
VIM-207ENST00000495528 IGFLR1Q9H665 355 aa9.95□□□□□ -0.82
VIM-207ENST00000495528 POLR1AO95602 1720 aaPredicted RBP9.94□□□□□ -0.82
VIM-207ENST00000495528 ALKQ9UM73 1620 aa9.94□□□□□ -0.82
VIM-207ENST00000495528 ARHGEF5Q12774 1597 aa9.94□□□□□ -0.82
VIM-207ENST00000495528 MED1Q15648 1581 aaPredicted RBP9.94□□□□□ -0.82
VIM-207ENST00000495528 LOC105371045A0A1W2PR82 267 aa9.94□□□□□ -0.82
VIM-207ENST00000495528 NDUFB5O43674 189 aa9.94□□□□□ -0.82
VIM-207ENST00000495528 LTKP29376 864 aa9.94□□□□□ -0.82
VIM-207ENST00000495528 TBC1D8BQ0IIM8 1120 aa9.94□□□□□ -0.82
VIM-207ENST00000495528 NEUROD1Q13562 356 aa9.94□□□□□ -0.82
VIM-207ENST00000495528 ZNF468Q5VIY5 522 aaPredicted RBP9.94□□□□□ -0.82
VIM-207ENST00000495528 TMC1Q8TDI8 760 aa9.94□□□□□ -0.82
VIM-207ENST00000495528 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.94□□□□□ -0.82
VIM-207ENST00000495528 ABCC3O15438 1527 aa9.93□□□□□ -0.82
VIM-207ENST00000495528 LRRC9Q6ZRR7 1453 aa9.93□□□□□ -0.82
VIM-207ENST00000495528 NEURL1BA8MQ27 555 aa9.93□□□□□ -0.82
VIM-207ENST00000495528 RARAP10276 462 aa9.93□□□□□ -0.82
VIM-207ENST00000495528 SND1Q7KZF4 910 aaKnown RBP eCLIP9.93□□□□□ -0.823e-10■■□□□ 14.5
VIM-207ENST00000495528 ACDQ96AP0 544 aa9.93□□□□□ -0.82
VIM-207ENST00000495528 OXCT2Q9BYC2 517 aaPredicted RBP9.93□□□□□ -0.82
VIM-207ENST00000495528 ZFATQ9P243 1243 aa9.93□□□□□ -0.82
VIM-207ENST00000495528 KLF15Q9UIH9 416 aa9.93□□□□□ -0.82
VIM-207ENST00000495528 GGA1Q9UJY5 639 aa9.93□□□□□ -0.82
VIM-207ENST00000495528 FNDC3AQ9Y2H6 1198 aaKnown RBP9.93□□□□□ -0.82
VIM-207ENST00000495528 DEPDC5O75140 1603 aa9.93□□□□□ -0.82
VIM-207ENST00000495528 LRRC7Q96NW7 1537 aa9.92□□□□□ -0.82
VIM-207ENST00000495528 ERVK-7P63135 1459 aa9.92□□□□□ -0.82
VIM-207ENST00000495528 MAPK1P28482 360 aa9.92□□□□□ -0.82
VIM-207ENST00000495528 EGFRP00533 1210 aa9.91□□□□□ -0.82
VIM-207ENST00000495528 ARAFP10398 606 aa9.91□□□□□ -0.82
VIM-207ENST00000495528 ZNF438Q7Z4V0 828 aa9.91□□□□□ -0.82
VIM-207ENST00000495528 WHAMMQ8TF30 809 aa9.91□□□□□ -0.82
VIM-207ENST00000495528 VPS8Q8N3P4 1428 aa9.9□□□□□ -0.82
VIM-207ENST00000495528 MAST1Q9Y2H9 1570 aa9.9□□□□□ -0.82
VIM-207ENST00000495528 SLURP2P0DP57 97 aa9.9□□□□□ -0.82
VIM-207ENST00000495528 ADH6P28332 368 aa9.9□□□□□ -0.82
VIM-207ENST00000495528 LYPD4Q6UWN0 246 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms