RNA–Protein interactions for RNA: YLR229C

CDC42, Transcript of Small rho-like GTPase, yeast

Gene CDC42, Length 576 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC42	YLR229C	DBP5	P20449	482 aa	Known RBP	4.81	□□□□□ -1.64
CDC42	YLR229C	VPS1	P21576	704 aa	Known RBP	4.81	□□□□□ -1.64
CDC42	YLR229C	MCM4	P30665	933 aa	Known RBP	4.81	□□□□□ -1.64
CDC42	YLR229C	SMY2	P32909	740 aa	Known RBP	4.81	□□□□□ -1.64
CDC42	YLR229C	MED8	P38304	223 aa		4.81	□□□□□ -1.64
CDC42	YLR229C	RGD1	P38339	666 aa		4.81	□□□□□ -1.64
CDC42	YLR229C	NDC80	P40460	691 aa		4.81	□□□□□ -1.64
CDC42	YLR229C	CSM2	P40465	213 aa		4.81	□□□□□ -1.64
CDC42	YLR229C	PCI8	P40512	444 aa		4.81	□□□□□ -1.64
CDC42	YLR229C	GNP1	P48813	663 aa		4.81	□□□□□ -1.64
CDC42	YLR229C	BUD9	P53226	547 aa		4.81	□□□□□ -1.64
CDC42	YLR229C	NCE103	P53615	221 aa		4.81	□□□□□ -1.64
CDC42	YLR229C	RPT6	Q01939	405 aa	Known RBP	4.81	□□□□□ -1.64
CDC42	YLR229C	EEB1	Q02891	456 aa		4.81	□□□□□ -1.64
CDC42	YLR229C	PRP3	Q03338	469 aa	Predicted RBP	4.81	□□□□□ -1.64
CDC42	YLR229C	SML1	Q04964	104 aa		4.81	□□□□□ -1.64
CDC42	YLR229C	ACK1	Q07622	623 aa	Predicted RBP	4.81	□□□□□ -1.64
CDC42	YLR229C	GAS5	Q08193	484 aa		4.81	□□□□□ -1.64
CDC42	YLR229C	KEL3	Q08979	651 aa	Predicted RBP	4.81	□□□□□ -1.64
CDC42	YLR229C	RRG1	Q12167	365 aa	Predicted RBP	4.81	□□□□□ -1.64
CDC42	YLR229C	PUS1	Q12211	544 aa	Known RBP	4.81	□□□□□ -1.64
CDC42	YLR229C	OSH2	Q12451	1283 aa		4.81	□□□□□ -1.64
CDC42	YLR229C	NSI1	Q12457	570 aa		4.81	□□□□□ -1.64
CDC42	YLR229C	NBL1	Q3E7Y6	73 aa		4.81	□□□□□ -1.64
CDC42	YLR229C	MET6	P05694	767 aa	Known RBP	4.8	□□□□□ -1.64
CDC42	YLR229C	MCM3	P24279	971 aa	Known RBP	4.8	□□□□□ -1.64
CDC42	YLR229C	MSH1	P25846	959 aa		4.8	□□□□□ -1.64
CDC42	YLR229C	RPS7A	P26786	190 aa	Known RBP	4.8	□□□□□ -1.64
CDC42	YLR229C	ICL1	P28240	557 aa	Predicted RBP	4.8	□□□□□ -1.64
CDC42	YLR229C	URA1	P28272	314 aa	Predicted RBP	4.8	□□□□□ -1.64
CDC42	YLR229C	SBA1	P28707	216 aa	Known RBP	4.8	□□□□□ -1.64
CDC42	YLR229C	PRO3	P32263	286 aa	Known RBP	4.8	□□□□□ -1.64
CDC42	YLR229C	COQ2	P32378	372 aa		4.8	□□□□□ -1.64
CDC42	YLR229C	SWI3	P32591	825 aa		4.8	□□□□□ -1.64
CDC42	YLR229C	YKL091C	P33324	310 aa	Known RBP	4.8	□□□□□ -1.64
CDC42	YLR229C	PIN4	P34217	668 aa	Known RBP RIP-Chip data	4.8	□□□□□ -1.64	not detected
CDC42	YLR229C	MRP8	P35719	219 aa		4.8	□□□□□ -1.64
CDC42	YLR229C	SAP190	P36123	1033 aa		4.8	□□□□□ -1.64
CDC42	YLR229C	GPT2	P36148	743 aa		4.8	□□□□□ -1.64
CDC42	YLR229C	VPS8	P39702	1274 aa		4.8	□□□□□ -1.64
CDC42	YLR229C	NOC2	P39744	710 aa	Known RBP	4.8	□□□□□ -1.64
CDC42	YLR229C	RIO2	P40160	425 aa	Known RBP	4.8	□□□□□ -1.64
CDC42	YLR229C	EAF6	P47128	113 aa		4.8	□□□□□ -1.64
CDC42	YLR229C	APT1	P49435	187 aa	Known RBP	4.8	□□□□□ -1.64
CDC42	YLR229C	CUE3	P53137	624 aa	Known RBP	4.8	□□□□□ -1.64
CDC42	YLR229C	TPO2	P53283	614 aa		4.8	□□□□□ -1.64
CDC42	YLR229C	VPS75	P53853	264 aa		4.8	□□□□□ -1.64
CDC42	YLR229C	HXT15	P54854	567 aa		4.8	□□□□□ -1.64
CDC42	YLR229C	TIF35	Q04067	274 aa	Known RBP	4.8	□□□□□ -1.64
CDC42	YLR229C	YDR341C	Q05506	607 aa	Known RBP	4.8	□□□□□ -1.64
CDC42	YLR229C	HCR1	Q05775	265 aa	Known RBP	4.8	□□□□□ -1.64
CDC42	YLR229C	RSA3	Q05942	220 aa	Known RBP	4.8	□□□□□ -1.64
CDC42	YLR229C	YLR225C	Q05948	407 aa	Known RBP	4.8	□□□□□ -1.64
CDC42	YLR229C	YLR257W	Q06146	321 aa	Known RBP	4.8	□□□□□ -1.64
CDC42	YLR229C	GIC2	Q06648	383 aa		4.8	□□□□□ -1.64
CDC42	YLR229C	TLG2	Q08144	397 aa		4.8	□□□□□ -1.64
CDC42	YLR229C	RUD3	Q12234	484 aa	Known RBP	4.8	□□□□□ -1.64
CDC42	YLR229C	CLF1	Q12309	687 aa	Predicted RBP	4.8	□□□□□ -1.64
CDC42	YLR229C	YKL068W-A	Q3E826	78 aa		4.8	□□□□□ -1.64
CDC42	YLR229C	FLO1	P32768	1537 aa		4.8	□□□□□ -1.64
CDC42	YLR229C	HKR1	P41809	1802 aa		4.79	□□□□□ -1.64
CDC42	YLR229C	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.79	□□□□□ -1.64	not detected
CDC42	YLR229C	SRP54	P20424	541 aa	Known RBP	4.79	□□□□□ -1.64
CDC42	YLR229C	AGP1	P25376	633 aa		4.79	□□□□□ -1.64
CDC42	YLR229C	BMH1	P29311	267 aa	Known RBP	4.79	□□□□□ -1.64
CDC42	YLR229C	RPL8B	P29453	256 aa	Known RBP	4.79	□□□□□ -1.64
CDC42	YLR229C	MLS1	P30952	554 aa		4.79	□□□□□ -1.64
CDC42	YLR229C	ABD1	P32783	436 aa	Predicted RBP	4.79	□□□□□ -1.64
CDC42	YLR229C	MOT2	P34909	587 aa	Known RBP	4.79	□□□□□ -1.64
CDC42	YLR229C	MDJ1	P35191	511 aa		4.79	□□□□□ -1.64
CDC42	YLR229C	QNS1	P38795	714 aa	Known RBP	4.79	□□□□□ -1.64
CDC42	YLR229C	TOM71	P38825	639 aa	Known RBP	4.79	□□□□□ -1.64
CDC42	YLR229C	CCT4	P39078	528 aa	Known RBP	4.79	□□□□□ -1.64
CDC42	YLR229C	SPF1	P39986	1215 aa	Known RBP	4.79	□□□□□ -1.64
CDC42	YLR229C	PRY1	P47032	299 aa		4.79	□□□□□ -1.64
CDC42	YLR229C	TIM54	P47045	478 aa		4.79	□□□□□ -1.64
CDC42	YLR229C	ARI1	P53111	347 aa	Known RBP	4.79	□□□□□ -1.64
CDC42	YLR229C	RTC4	P53850	401 aa		4.79	□□□□□ -1.64
CDC42	YLR229C	ALF1	P53904	254 aa		4.79	□□□□□ -1.64
CDC42	YLR229C	KIN4	Q01919	800 aa		4.79	□□□□□ -1.64
CDC42	YLR229C	WAR1	Q03631	944 aa		4.79	□□□□□ -1.64
CDC42	YLR229C	TPP1	Q03796	238 aa		4.79	□□□□□ -1.64
CDC42	YLR229C	SHE9	Q04172	456 aa		4.79	□□□□□ -1.64
CDC42	YLR229C	EIS1	Q05050	843 aa	Known RBP	4.79	□□□□□ -1.64
CDC42	YLR229C	MMR1	Q06324	491 aa		4.79	□□□□□ -1.64
CDC42	YLR229C	PCL8	Q08966	492 aa		4.79	□□□□□ -1.64
CDC42	YLR229C	TIP41	Q12199	356 aa		4.79	□□□□□ -1.64
CDC42	YLR229C	CIT1	P00890	479 aa		4.78	□□□□□ -1.64
CDC42	YLR229C	RPS4A	P0CX35	261 aa	Known RBP	4.78	□□□□□ -1.64
CDC42	YLR229C	RPS4B	P0CX36	261 aa	Known RBP	4.78	□□□□□ -1.64
CDC42	YLR229C	ALG1	P16661	449 aa		4.78	□□□□□ -1.64
CDC42	YLR229C	PRP9	P19736	530 aa	Known RBP	4.78	□□□□□ -1.64
CDC42	YLR229C	RPO26	P20435	155 aa		4.78	□□□□□ -1.64
CDC42	YLR229C	PRE8	P23639	250 aa		4.78	□□□□□ -1.64
CDC42	YLR229C	SAC6	P32599	642 aa	Known RBP	4.78	□□□□□ -1.64
CDC42	YLR229C	AFG2	P32794	780 aa		4.78	□□□□□ -1.64
CDC42	YLR229C	DEF1	P35732	738 aa	Known RBP	4.78	□□□□□ -1.64
CDC42	YLR229C	SWH1	P35845	1188 aa		4.78	□□□□□ -1.64
CDC42	YLR229C	BYE1	P36106	594 aa		4.78	□□□□□ -1.64
CDC42	YLR229C	GDT1	P38301	280 aa	Predicted RBP	4.78	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 21.1 ms